Clone BS07477 Report

Search the DGRC for BS07477

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptfusl-RA
Protein status:BS07477.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07477.3prime Sequence

889 bp (787 high quality bases) assembled on 2006-01-06

> BS07477.3prime
ATGGTCTAGAAAGCTTCTAAACGATCTGCACGGCGGCATGTGGTTTCTCG
ATGAGGCTACTCTGTGCCTCCTTGTCCTTCTCCGCATTCCGGCCGATTGA
GACGTGCTCCGGTTTTAGATAGTAATGCGGCGGCGGAGGCTGCGATGTGG
CTTGAAGGCCCGCCTTCTTCCGACGCTCGCGGAGGAAGTGCAGTCGCACA
TAGTTAATGGGTATATCGACGCTATCGGCGCCCACGCCCTCGGCGTCGAT
GAACACGCCGCGCACCAGGATGGAATTGGAGCACTTGAGGGCAGCGAGGA
GCAGGAAAGGAACGATATGTGTCAGCCAGAAGCTCAGCAGCTTGTTATCT
GGATACAGATACACATCCAGCAGATTCCAGATGCCGCGCCAGGCGTTCAC
AGCTCCAAAGAAAGTCATTAGATAGTAGATGTCGCATATGATCAGCTTGA
GGATTCCGCTGATCCGACGACAAACGTACCTCATCAGTGGGTGAATAAGG
AAGGTCACAAAAACCGTCAGATATCCAATGAGCAGCGATCCCCAGGCCGA
TTTGGCCTTGTCCGCCGGGAACAGCAGCAGGTCAAAGATTCCCCAGACGC
CGCGCCAAGCGATGACCACCAGGCTGCCGATCACAAAGACCGAGAAGAGG
GTGTCCAAAATGTAAAGGCCAGGTTGATGAAAACCGGGTATTTTGAACAT
GGTGTCCACCTCAAAGTAGTCACTCTTGTGATCCATGGTAACGGTGTAGG
GAGCTGCTCCGAGGTTCCGCAGAGTGCGTGTGGCTACCAGAAAGATGAGC
GCGATGGCCGTGACCACGGACACAATGATCAGAGAGTCCACACTGGTCAG
CCAATCGCAGAGCAGCCAGGCACCACGCCACATATTCAC

BS07477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14021-PB 1362 CG14021-RB 490..1362 889..17 4365 100 Minus
CG14021-PA 1362 CG14021-RA 490..1362 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1638..2510 889..17 4365 100 Minus
fusl-RE 2754 CG14021-RE 1484..2356 889..17 4365 100 Minus
fusl-RD 2703 CG14021-RD 1433..2305 889..17 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5330868..5331202 17..351 1675 100 Plus
2L 23513712 2L 5331721..5331925 685..889 1025 100 Plus
2L 23513712 2L 5331259..5331447 345..533 930 99.5 Plus
2L 23513712 2L 5331508..5331660 533..685 765 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:25:42 has no hits.

BS07477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:01 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 490..1362 17..889 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:33 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 490..1362 17..889 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:27 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 1433..2310 11..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:02 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 1433..2310 11..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:02 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5331722..5331925 686..889 100   Plus
2L 5331508..5331660 533..685 100 <- Plus
2L 5330863..5331199 11..348 99 <- Plus
2L 5331263..5331446 349..532 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:27 Download gff for BS07477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5330863..5331199 11..348 99 <- Plus
arm_2L 5331263..5331446 349..532 100 <- Plus
arm_2L 5331508..5331660 533..685 100 <- Plus
arm_2L 5331722..5331925 686..889 100   Plus

BS07477.5prime Sequence

866 bp (799 high quality bases) assembled on 2006-01-06

> BS07477.5prime
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTTCCGGCGGACAAGGGCAAATCGGCC
TGGGGATCGCTGCTCA

BS07477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14021-PB 1362 CG14021-RB 1..850 17..866 4200 99.7 Plus
CG14021-PA 1362 CG14021-RA 1..850 17..866 4200 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1145..1998 13..866 4225 99.6 Plus
fusl-RE 2754 CG14021-RE 991..1844 13..866 4225 99.6 Plus
fusl-RD 2703 CG14021-RD 940..1793 13..866 4225 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5331721..5332418 710..13 3475 99.9 Minus
2L 23513712 2L 5331508..5331660 862..710 735 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 20:10:17 has no hits.

BS07477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:02 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:35 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14021-PA 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:32 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 934..1792 6..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:06 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 934..1792 6..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:06 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5331505..5331660 710..865 97 <- Minus
2L 5331722..5332424 6..709 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:32 Download gff for BS07477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5331505..5331660 710..865 97 <- Minus
arm_2L 5331722..5332424 6..709 99   Minus

BS07477.complete Sequence

1394 bp (1394 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635880

> BS07477.complete
GAAGTTATCAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCG
GCAGGCCGCAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAG
CAGCTCCTGCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCT
GCCACCCGCACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGG
CGGAGACGCCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGAC
ATGATGATGTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCG
TGGCACCTGGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGC
TGTCTGCGATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTC
ACAGTCACACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCG
ACTCACATACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCG
TTTGCGTGAATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACC
AGTGTGGACTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCAT
CTTTCTGGTAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACA
CCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTC
AAAATACCCGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTT
CTCGGTCTTTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCT
GGGGAATCTTTGACCTGCTGCTGTTCCCGGCGGACAAGGCCAAATCGGCC
TGGGGATCGCTGCTCATTGGATATCTGACGGTTTTTGTGACCTTCCTTAT
TCACCCACTGATGAGGTACGTTTGTCGTCGGATCAGCGGAATCCTCAAGC
TGATCATATGCGACATCTACTATCTAATGACTTTCTTTGGAGCTGTGAAC
GCCTGGCGCGGCATCTGGAATCTGCTGGATGTGTATCTGTATCCAGATAA
CAAGCTGCTGAGCTTCTGGCTGACACATATCGTTCCTTTCCTGCTCCTCG
CTGCCCTCAAGTGCTCCAATTCCATCCTGGTGCGCGGCGTGTTCATCGAC
GCCGAGGGCGTGGGCGCCGATAGCGTCGATATACCCATTAACTATGTGCG
ACTGCACTTCCTCCGCGAGCGTCGGAAGAAGGCGGGCCTTCAAGCCACAT
CGCAGCCTCCGCCGCCGCATTACTATCTAAAACCGGAGCACGTCTCAATC
GGCCGGAATGCGGAGAAGGACAAGGAGGCACAGAGTAGCCTCATCGAGAA
ACCACATGCCGCCGTGCAGATCGTTTAGAAGCTTTCTAGACCAT

BS07477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 1362 CG14021-PF 1..1362 17..1378 6810 100 Plus
fusl-RE 1362 CG14021-PE 1..1362 17..1378 6810 100 Plus
fusl-RD 1362 CG14021-PD 1..1362 17..1378 6810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-RF 2908 CG14021-RF 1145..2510 13..1378 6815 99.9 Plus
fusl-RE 2754 CG14021-RE 991..2356 13..1378 6815 99.9 Plus
fusl-RD 2703 CG14021-RD 940..2305 13..1378 6815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5331721..5332418 710..13 3475 99.9 Minus
2L 23513712 2L 5330868..5331202 1378..1044 1675 100 Minus
2L 23513712 2L 5331259..5331447 1050..862 930 99.5 Minus
2L 23513712 2L 5331508..5331660 862..710 765 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:53:31 has no hits.

BS07477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:40 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 1..1362 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:44 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 847..2223 6..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:41 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 949..2305 22..1378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:40 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
CG14021-RA 847..2223 6..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:26 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
fusl-RD 949..2305 22..1378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:26 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5330868..5331199 1047..1378 100 <- Minus
2L 5331263..5331446 863..1046 100 <- Minus
2L 5331508..5331660 710..862 100 <- Minus
2L 5331722..5332409 22..709 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:41 Download gff for BS07477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5330868..5331199 1047..1378 100 <- Minus
arm_2L 5331263..5331446 863..1046 100 <- Minus
arm_2L 5331508..5331660 710..862 100 <- Minus
arm_2L 5331722..5332409 22..709 100   Minus

BS07477.pep Sequence

Translation from 16 to 1377

> BS07477.pep
MLPTDKGSLTAGRPQKSHCHGSVSVSDQQLLQHLHPHTHPRPVHLPPAHA
THSPACEKRLEAETPRRDLHELLLELLDMMMSCLVVAPCVIAYWRGTWEL
MFVYLFPGSLPLSAMASFLIGGLGHFFFTVTQNFFKEHIHPDRRRLTYYA
VSRLYTAVFGIVCVNMWRGAWLLCDWLTSVDSLIIVSVVTAIALIFLVAT
RTLRNLGAAPYTVTMDHKSDYFEVDTMFKIPGFHQPGLYILDTLFSVFVI
GSLVVIAWRGVWGIFDLLLFPADKAKSAWGSLLIGYLTVFVTFLIHPLMR
YVCRRISGILKLIICDIYYLMTFFGAVNAWRGIWNLLDVYLYPDNKLLSF
WLTHIVPFLLLAALKCSNSILVRGVFIDAEGVGADSVDIPINYVRLHFLR
ERRKKAGLQATSQPPPPHYYLKPEHVSIGRNAEKDKEAQSSLIEKPHAAV
QIV*

BS07477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
fusl-PF 453 CG14021-PF 1..453 1..453 2409 100 Plus
fusl-PE 453 CG14021-PE 1..453 1..453 2409 100 Plus
fusl-PD 453 CG14021-PD 1..453 1..453 2409 100 Plus
fusl-PC 453 CG14021-PC 1..453 1..453 2409 100 Plus
fusl-PA 453 CG14021-PA 1..453 1..453 2409 100 Plus