Clone Sequence Records
BS07478.3prime Sequence
937 bp (833 high quality bases) assembled on 2006-01-06
> BS07478.3prime
ATGGTCTAGAAAGCTTCTAGATAAAGTGGGAGGCATATTCGTGGGGCATT
ACACCCCGTCGGGGATAAAAGGTGTGGGTGGTGGAGAACTTGAGCAGGTT
GGTTATGTCGCTGGTGTAGATGTCGGCAAAGCGGAAGAGGCGTCTTGAGA
AGTAAGTGGGGTTGTGGTAGGTGCGGAAAACGCTGCCAAACTGCTCGTTG
AACACGTTCTTCGTTTTGTTGCGCAACTGATCCCGCTCCTCCATCCACTC
CTTTAGGCAGATCTGCGCTGCCTCGCTATCATCGTCCTGGGTGTCCTCGA
TGAGCTGCGTCAGCATTTGCAGCCAGTTGGCGCTCATCTTGAAGTCCTTA
CGATTGAGGGTTTTAATTTCGTGAGCCAGTTCGCTAATAATGGCTCCTGT
CCTCCAGCTGTGCTTCAGAGTAACATCTGCTAGGTCGCTGTACGGATGAT
CTCCGAAATAGAGCACAGAGTGACCACGCCAGCCCTTCAGCTCTTGAAGC
TGTCTCACCGAACCCTCGTAGTAGATTTTTCCCTTCTCCAGCTTGAATAC
CCGATCCCATAGGTGTGACTGCGTTCGCTCGTCGAATAGCCTTATTGGTC
GAGATTCATCCGTAAAGAACTTTGGTTTGCGGGCCTGCACGATGACCACA
TCGAAGAAATCACGCCAGTTGGCGCCGACCAGAAAGGACATGCCACAGTT
TACAAACGAGTACGGGCTATTGGTGACTAGAAAGAGATTCTTGCCCGCCT
GCTGCAGCTTCTCGAAGAACTTGACCAGCTTCGGGTTTCGTTCTATGTAC
TTCTCAGTGTTCCGCATCACCTTGCCGTGCATAATGGGATGGCAGGAGCC
CATGGCGGTCCTGGTGTCATGGAAAACATCTCTGGGATGTAGTCGATTCG
ATTGCGTTCAAATATTCGATTACATTGCACAGCAGGC
BS07478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PC | 1389 | CG1814-RC | 528..1389 | 878..17 | 4310 | 100 | Minus |
CG1814-PA | 1647 | CG1814-RA | 786..1647 | 878..17 | 4310 | 100 | Minus |
CG1814-PB | 1230 | CG1814-RB | 369..1230 | 878..17 | 4310 | 100 | Minus |
CG1814-PC | 1389 | CG1814-RC | 467..494 | 937..910 | 140 | 100 | Minus |
CG1814-PA | 1647 | CG1814-RA | 725..752 | 937..910 | 140 | 100 | Minus |
CG1814-PB | 1230 | CG1814-RB | 308..335 | 937..910 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 801..1724 | 937..16 | 4540 | 99.6 | Minus |
CG1814-RA | 1929 | CG1814-RA | 850..1773 | 937..16 | 4540 | 99.6 | Minus |
CG1814-RC | 1673 | CG1814-RC | 594..1517 | 937..16 | 4540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9580510..9580747 | 937..702 | 1060 | 98.3 | Minus |
2R | 25286936 | 2R | 9581485..9581691 | 222..16 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 9580818..9581005 | 701..514 | 940 | 100 | Minus |
2R | 25286936 | 2R | 9581266..9581417 | 373..222 | 760 | 100 | Minus |
2R | 25286936 | 2R | 9581064..9581206 | 516..374 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:48:59 has no hits.
BS07478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:04 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PC | 467..1389 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:36 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PB | 308..1230 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:40 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 594..1522 | 10..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:33 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 594..1522 | 10..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:33 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580510..9580747 | 702..937 | 98 | -> | Minus |
2R | 9580818..9581004 | 515..701 | 100 | -> | Minus |
2R | 9581066..9581206 | 374..514 | 100 | -> | Minus |
2R | 9581266..9581417 | 222..373 | 100 | -> | Minus |
2R | 9581486..9581696 | 10..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:40 Download gff for
BS07478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5468771..5468922 | 222..373 | 100 | -> | Minus |
arm_2R | 5468015..5468252 | 702..937 | 98 | -> | Minus |
arm_2R | 5468323..5468509 | 515..701 | 100 | -> | Minus |
arm_2R | 5468571..5468711 | 374..514 | 100 | -> | Minus |
arm_2R | 5468991..5469201 | 10..221 | 98 | | Minus |
BS07478.5prime Sequence
858 bp (774 high quality bases) assembled on 2006-01-06
> BS07478.5prime
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTG
BS07478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PC | 1389 | CG1814-RC | 160..1001 | 17..858 | 4210 | 100 | Plus |
CG1814-PA | 1647 | CG1814-RA | 418..1259 | 17..858 | 4210 | 100 | Plus |
CG1814-PB | 1230 | CG1814-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 490..1335 | 13..858 | 4215 | 99.9 | Plus |
CG1814-RA | 1929 | CG1814-RA | 539..1384 | 13..858 | 4215 | 99.9 | Plus |
CG1814-RC | 1673 | CG1814-RC | 283..1128 | 13..858 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9580451..9580747 | 265..561 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 9580114..9580366 | 13..265 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 9580818..9581005 | 562..749 | 940 | 100 | Plus |
2R | 25286936 | 2R | 9581064..9581175 | 747..858 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:15:57 has no hits.
BS07478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:05 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PC | 153..1001 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:37 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-PB | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:26:09 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 280..1128 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:11 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 280..1128 | 8..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:11 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580111..9580366 | 8..265 | 98 | -> | Plus |
2R | 9580452..9580747 | 266..561 | 100 | -> | Plus |
2R | 9580818..9581004 | 562..748 | 100 | -> | Plus |
2R | 9581066..9581175 | 749..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:26:09 Download gff for
BS07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5467616..5467871 | 8..265 | 98 | -> | Plus |
arm_2R | 5467957..5468252 | 266..561 | 100 | -> | Plus |
arm_2R | 5468323..5468509 | 562..748 | 100 | -> | Plus |
arm_2R | 5468571..5468680 | 749..858 | 100 | | Plus |
BS07478.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635881
> BS07478.complete
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
AACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACTGGCTGCAAATGC
TGACGCAGCTCATCGAGGACACCCAGGACGATGATAGCGAGGCAGCGCAG
ATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTTGCGCAACAAAAC
GAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCCGCACCTACCACA
ACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCCGACATCTACACC
AGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCACACCTTTTATCC
CCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACTTTATCTAGAAGC
TTTCTAGACCAT
BS07478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RA | 1647 | CG1814-PA | 414..1647 | 13..1246 | 6155 | 99.9 | Plus |
CG1814-RC | 1389 | CG1814-PC | 156..1389 | 13..1246 | 6155 | 99.9 | Plus |
CG1814-RB | 1230 | CG1814-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RB | 1880 | CG1814-RB | 490..1724 | 13..1247 | 6160 | 99.9 | Plus |
CG1814-RA | 1929 | CG1814-RA | 539..1773 | 13..1247 | 6160 | 99.9 | Plus |
CG1814-RC | 1673 | CG1814-RC | 283..1517 | 13..1247 | 6160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9580451..9580747 | 265..561 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 9580114..9580366 | 13..265 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 9581485..9581691 | 1041..1247 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 9580818..9581005 | 562..749 | 940 | 100 | Plus |
2R | 25286936 | 2R | 9581266..9581417 | 890..1041 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9581064..9581206 | 747..889 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:51 has no hits.
BS07478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:41 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RA | 411..1647 | 8..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:46 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RB | 373..1615 | 8..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:21 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 287..1516 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:42 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RB | 373..1615 | 8..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:21 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RC | 287..1516 | 17..1246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:21 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9580118..9580366 | 17..265 | 100 | -> | Plus |
2R | 9580452..9580747 | 266..561 | 100 | -> | Plus |
2R | 9580818..9581004 | 562..748 | 100 | -> | Plus |
2R | 9581066..9581206 | 749..889 | 100 | -> | Plus |
2R | 9581266..9581417 | 890..1041 | 100 | -> | Plus |
2R | 9581486..9581690 | 1042..1246 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:21 Download gff for
BS07478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5468991..5469195 | 1042..1246 | 100 | | Plus |
arm_2R | 5467957..5468252 | 266..561 | 100 | -> | Plus |
arm_2R | 5468323..5468509 | 562..748 | 100 | -> | Plus |
arm_2R | 5468571..5468711 | 749..889 | 100 | -> | Plus |
arm_2R | 5467623..5467871 | 17..265 | 100 | -> | Plus |
arm_2R | 5468771..5468922 | 890..1041 | 100 | -> | Plus |
BS07478.pep Sequence
Translation from 16 to 1245
> BS07478.pep
MLVKRFRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVY
RGRTKVEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVP
EMCLLCNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKY
IERNPKLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDV
VIVQARKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQL
QELKGWRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRK
DFKMSANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFN
EQFGSVFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVM
PHEYASHFI*
BS07478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PB | 409 | CG1814-PB | 1..409 | 1..409 | 2182 | 100 | Plus |
CG1814-PA | 548 | CG1814-PA | 140..548 | 1..409 | 2182 | 100 | Plus |
CG1814-PC | 462 | CG1814-PC | 54..462 | 1..409 | 2182 | 100 | Plus |
CG32549-PD | 581 | CG32549-PD | 76..481 | 8..403 | 410 | 27.7 | Plus |
CG32549-PF | 612 | CG32549-PF | 107..512 | 8..403 | 410 | 27.7 | Plus |