Clone BS07478 Report

Search the DGRC for BS07478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG1814-RB
Protein status:BS07478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07478.3prime Sequence

937 bp (833 high quality bases) assembled on 2006-01-06

> BS07478.3prime
ATGGTCTAGAAAGCTTCTAGATAAAGTGGGAGGCATATTCGTGGGGCATT
ACACCCCGTCGGGGATAAAAGGTGTGGGTGGTGGAGAACTTGAGCAGGTT
GGTTATGTCGCTGGTGTAGATGTCGGCAAAGCGGAAGAGGCGTCTTGAGA
AGTAAGTGGGGTTGTGGTAGGTGCGGAAAACGCTGCCAAACTGCTCGTTG
AACACGTTCTTCGTTTTGTTGCGCAACTGATCCCGCTCCTCCATCCACTC
CTTTAGGCAGATCTGCGCTGCCTCGCTATCATCGTCCTGGGTGTCCTCGA
TGAGCTGCGTCAGCATTTGCAGCCAGTTGGCGCTCATCTTGAAGTCCTTA
CGATTGAGGGTTTTAATTTCGTGAGCCAGTTCGCTAATAATGGCTCCTGT
CCTCCAGCTGTGCTTCAGAGTAACATCTGCTAGGTCGCTGTACGGATGAT
CTCCGAAATAGAGCACAGAGTGACCACGCCAGCCCTTCAGCTCTTGAAGC
TGTCTCACCGAACCCTCGTAGTAGATTTTTCCCTTCTCCAGCTTGAATAC
CCGATCCCATAGGTGTGACTGCGTTCGCTCGTCGAATAGCCTTATTGGTC
GAGATTCATCCGTAAAGAACTTTGGTTTGCGGGCCTGCACGATGACCACA
TCGAAGAAATCACGCCAGTTGGCGCCGACCAGAAAGGACATGCCACAGTT
TACAAACGAGTACGGGCTATTGGTGACTAGAAAGAGATTCTTGCCCGCCT
GCTGCAGCTTCTCGAAGAACTTGACCAGCTTCGGGTTTCGTTCTATGTAC
TTCTCAGTGTTCCGCATCACCTTGCCGTGCATAATGGGATGGCAGGAGCC
CATGGCGGTCCTGGTGTCATGGAAAACATCTCTGGGATGTAGTCGATTCG
ATTGCGTTCAAATATTCGATTACATTGCACAGCAGGC

BS07478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PC 1389 CG1814-RC 528..1389 878..17 4310 100 Minus
CG1814-PA 1647 CG1814-RA 786..1647 878..17 4310 100 Minus
CG1814-PB 1230 CG1814-RB 369..1230 878..17 4310 100 Minus
CG1814-PC 1389 CG1814-RC 467..494 937..910 140 100 Minus
CG1814-PA 1647 CG1814-RA 725..752 937..910 140 100 Minus
CG1814-PB 1230 CG1814-RB 308..335 937..910 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 801..1724 937..16 4540 99.6 Minus
CG1814-RA 1929 CG1814-RA 850..1773 937..16 4540 99.6 Minus
CG1814-RC 1673 CG1814-RC 594..1517 937..16 4540 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9580510..9580747 937..702 1060 98.3 Minus
2R 25286936 2R 9581485..9581691 222..16 1035 100 Minus
2R 25286936 2R 9580818..9581005 701..514 940 100 Minus
2R 25286936 2R 9581266..9581417 373..222 760 100 Minus
2R 25286936 2R 9581064..9581206 516..374 715 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:48:59 has no hits.

BS07478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:04 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PC 467..1389 17..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:36 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PB 308..1230 17..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:40 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 594..1522 10..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:33 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 594..1522 10..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:33 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9580510..9580747 702..937 98 -> Minus
2R 9580818..9581004 515..701 100 -> Minus
2R 9581066..9581206 374..514 100 -> Minus
2R 9581266..9581417 222..373 100 -> Minus
2R 9581486..9581696 10..221 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:40 Download gff for BS07478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5468771..5468922 222..373 100 -> Minus
arm_2R 5468015..5468252 702..937 98 -> Minus
arm_2R 5468323..5468509 515..701 100 -> Minus
arm_2R 5468571..5468711 374..514 100 -> Minus
arm_2R 5468991..5469201 10..221 98   Minus

BS07478.5prime Sequence

858 bp (774 high quality bases) assembled on 2006-01-06

> BS07478.5prime
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTG

BS07478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PC 1389 CG1814-RC 160..1001 17..858 4210 100 Plus
CG1814-PA 1647 CG1814-RA 418..1259 17..858 4210 100 Plus
CG1814-PB 1230 CG1814-RB 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 490..1335 13..858 4215 99.9 Plus
CG1814-RA 1929 CG1814-RA 539..1384 13..858 4215 99.9 Plus
CG1814-RC 1673 CG1814-RC 283..1128 13..858 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9580451..9580747 265..561 1485 100 Plus
2R 25286936 2R 9580114..9580366 13..265 1250 99.6 Plus
2R 25286936 2R 9580818..9581005 562..749 940 100 Plus
2R 25286936 2R 9581064..9581175 747..858 560 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:15:57 has no hits.

BS07478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:05 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PC 153..1001 8..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:37 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-PB 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:26:09 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 280..1128 8..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:11 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 280..1128 8..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:11 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9580111..9580366 8..265 98 -> Plus
2R 9580452..9580747 266..561 100 -> Plus
2R 9580818..9581004 562..748 100 -> Plus
2R 9581066..9581175 749..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:26:09 Download gff for BS07478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5467616..5467871 8..265 98 -> Plus
arm_2R 5467957..5468252 266..561 100 -> Plus
arm_2R 5468323..5468509 562..748 100 -> Plus
arm_2R 5468571..5468680 749..858 100   Plus

BS07478.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635881

> BS07478.complete
GAAGTTATCAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACA
TCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTAC
GACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACA
GCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGC
TGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCG
AACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGA
CCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATT
TTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACC
AGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCG
GAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCG
AGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCG
TACTCGTTTGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCG
TGATTTCTTCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTA
CGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACAC
CTATGGGATCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGG
TTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGC
TCTATTTCGGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAG
CACAGCTGGAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAA
AACCCTCAATCGTAAGGACTTCAAGATGAGCGCCAACTGGCTGCAAATGC
TGACGCAGCTCATCGAGGACACCCAGGACGATGATAGCGAGGCAGCGCAG
ATCTGCCTAAAGGAGTGGATGGAGGAGCGGGATCAGTTGCGCAACAAAAC
GAAGAACGTGTTCAACGAGCAGTTTGGCAGCGTTTTCCGCACCTACCACA
ACCCCACTTACTTCTCAAGACGCCTCTTCCGCTTTGCCGACATCTACACC
AGCGACATAACCAACCTGCTCAAGTTCTCCACCACCCACACCTTTTATCC
CCGACGGGGTGTAATGCCCCACGAATATGCCTCCCACTTTATCTAGAAGC
TTTCTAGACCAT

BS07478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RA 1647 CG1814-PA 414..1647 13..1246 6155 99.9 Plus
CG1814-RC 1389 CG1814-PC 156..1389 13..1246 6155 99.9 Plus
CG1814-RB 1230 CG1814-PB 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RB 1880 CG1814-RB 490..1724 13..1247 6160 99.9 Plus
CG1814-RA 1929 CG1814-RA 539..1773 13..1247 6160 99.9 Plus
CG1814-RC 1673 CG1814-RC 283..1517 13..1247 6160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9580451..9580747 265..561 1485 100 Plus
2R 25286936 2R 9580114..9580366 13..265 1250 99.6 Plus
2R 25286936 2R 9581485..9581691 1041..1247 1035 100 Plus
2R 25286936 2R 9580818..9581005 562..749 940 100 Plus
2R 25286936 2R 9581266..9581417 890..1041 760 100 Plus
2R 25286936 2R 9581064..9581206 747..889 715 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:51 has no hits.

BS07478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:41 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 411..1647 8..1246 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:46 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RB 373..1615 8..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:21 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 287..1516 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:42 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RB 373..1615 8..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:21 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RC 287..1516 17..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:21 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9580118..9580366 17..265 100 -> Plus
2R 9580452..9580747 266..561 100 -> Plus
2R 9580818..9581004 562..748 100 -> Plus
2R 9581066..9581206 749..889 100 -> Plus
2R 9581266..9581417 890..1041 100 -> Plus
2R 9581486..9581690 1042..1246 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:21 Download gff for BS07478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5468991..5469195 1042..1246 100   Plus
arm_2R 5467957..5468252 266..561 100 -> Plus
arm_2R 5468323..5468509 562..748 100 -> Plus
arm_2R 5468571..5468711 749..889 100 -> Plus
arm_2R 5467623..5467871 17..265 100 -> Plus
arm_2R 5468771..5468922 890..1041 100 -> Plus

BS07478.pep Sequence

Translation from 16 to 1245

> BS07478.pep
MLVKRFRYPEDILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVY
RGRTKVEADEVLKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVP
EMCLLCNVIEYFERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKY
IERNPKLVKFFEKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDV
VIVQARKPKFFTDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQL
QELKGWRGHSVLYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRK
DFKMSANWLQMLTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFN
EQFGSVFRTYHNPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVM
PHEYASHFI*

BS07478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PB 409 CG1814-PB 1..409 1..409 2182 100 Plus
CG1814-PA 548 CG1814-PA 140..548 1..409 2182 100 Plus
CG1814-PC 462 CG1814-PC 54..462 1..409 2182 100 Plus
CG32549-PD 581 CG32549-PD 76..481 8..403 410 27.7 Plus
CG32549-PF 612 CG32549-PF 107..512 8..403 410 27.7 Plus