Clone Sequence Records
BS07479.3prime Sequence
932 bp (762 high quality bases) assembled on 2006-01-06
> BS07479.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGCGACTCCCTGGGATAAAATGTATCC
CAAACGGCTAGGCAATCGGACTCCGGCAAATCTCGCATCTCAAGATCGTG
GCTAATGTTGAAGCACTTCTCCACGGCATTTTCTTTAAGCTGGACGGCTT
CCCATTTGGCAGATCCCAGTTCTGGGCAATTTGGATTCCCACTGGAGGCA
AACGACGTCCACATGCCAACCATTCTCTCAATGGTTTTGTATTCCATCGA
TGACTTATCCAGTTTGGAGGCTATGATGTTGTAGAACAGGTATGATAGTT
CATCCGCATGGGCTACTCCGCGAATCCGATCGCCGCACACCAGTCGGCGA
AATTGATTGAAGTGCGGGGAGTCGAAGTCAAAACGATATAGATAGGTGGG
CGTTTTGGGGGCATAAGATTGACGGGCGAGAATAAAGCGATGCGTATCGT
GCCAAATCTGGCGATGCGAAAATATATTCAGGGCCTCGAACATCTCCATC
GATTCCTGCATCTCGTTGTTGAAGTAGAGTTGCTTTAGTCGCCGCACCAG
TAGATCCTGCCCTTCCAGACTGCTCGTTTCTCTAACCTCCCTTGGCAGGA
TGTTGTGAAAGTTTTTCAAGGCCCAAGGATCTTTTCTTACTAGTTGGTAG
GAAAACAAGCCCTCGAAAGAATTTCCACCGACAATAACGGGAATGTCGTT
GCCCCACGCTTCGGACAACAGATCCTTGTGCCTTTTGGGCACCACACAGT
GGTCGGTTTCGTAGGGTTCTATCACAGGACCAAATGCGAATAGTANGAAG
CTTCGCACCTCGTCCAAATTGATAACGTCCTGATCAATAGCCGCTATCTG
GCGTGCGCAAACCTTACTAAGAAAGCTTAGTACATCCGCATCCTTCTCGT
CGCCCTTGTAGCCCAGATTCTGGGGCAGCCGG
BS07479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2505-PA | 1701 | alpha-Est2-RA | 786..1701 | 932..17 | 4536 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RA | 1958 | CG2505-RA | 891..1806 | 932..17 | 4554 | 99.8 | Minus |
alpha-Est2-RB | 2141 | CG2505-RB | 1074..1989 | 932..17 | 4554 | 99.8 | Minus |
alpha-Est1-RA | 2123 | CG1031-RA | 1495..1698 | 412..209 | 240 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7544163..7545078 | 932..17 | 4554 | 99.8 | Minus |
3R | 32079331 | 3R | 7546158..7546361 | 209..412 | 240 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:08:13 has no hits.
BS07479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:06 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 786..1701 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:39 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 786..1701 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:47 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 891..1810 | 12..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:43 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 891..1810 | 12..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:43 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7544163..7545082 | 12..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:47 Download gff for
BS07479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3369885..3370804 | 12..932 | 99 | | Minus |
BS07479.5prime Sequence
921 bp (832 high quality bases) assembled on 2006-01-06
> BS07479.5prime
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAAGACGTTATCAATTTGGA
BS07479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2505-PA | 1701 | alpha-Est2-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 2141 | CG2505-RB | 288..1193 | 16..921 | 4515 | 99.9 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 105..1010 | 16..921 | 4515 | 99.9 | Plus |
alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 124..755 | 550 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7543037..7543504 | 64..531 | 2340 | 100 | Plus |
3R | 32079331 | 3R | 7543890..7544282 | 529..921 | 1950 | 99.7 | Plus |
3R | 32079331 | 3R | 7546931..7547128 | 755..558 | 405 | 80.3 | Minus |
3R | 32079331 | 3R | 7542849..7542898 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 08:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 611..660 | 115 | 70 | Plus |
BS07479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:07 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:40 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2505-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:55:47 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 105..1009 | 16..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:20 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 105..1009 | 16..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:20 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7542849..7542896 | 16..63 | 100 | -> | Plus |
3R | 7543037..7543503 | 64..530 | 100 | -> | Plus |
3R | 7543892..7544281 | 531..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:55:47 Download gff for
BS07479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3369614..3370003 | 531..920 | 99 | | Plus |
arm_3R | 3368571..3368618 | 16..63 | 100 | -> | Plus |
arm_3R | 3368759..3369225 | 64..530 | 100 | -> | Plus |
BS07479.complete Sequence
1733 bp assembled on 2008-01-03
GenBank Submission: FJ635882
> BS07479.complete
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGAAGCTTCCTACTATTCGCAT
TTGGTCCTGTGATAGAACCCTACGAAACCGACCACTGTGTGGTGCCCAAA
AGGCACAAGGATCTGTTGTCCGAAGCGTGGGGCAACGACATTCCCGTTAT
TGTCGGTGGAAATTCTTTCGAGGGCTTGTTTTCCTACCAACTAGTAAGAA
AAGATCCTTGGGCCTTGAAAAACTTTCACAACATCCTGCCAAGGGAGGTT
AGAGAAACGAGCAGTCTGGAAGGGCAGGATCTACTGGTGCGGCGACTAAA
GCAACTCTACTTCAACAACGAGATGCAGGAATCGATGGAGATGTTCGAGG
CCCTGAATATATTTTCGCATCGCCAGATTTGGCACGATACGCATCGCTTT
ATTCTCGCCCGTCAATCTTATGCCCCCAAAACGCCCACCTATCTATATCG
TTTTGACTTCGACTCCCCGCACTTCAATCAATTTCGCCGACTGGTGTGCG
GCGATCGGATTCGCGGAGTAGCCCATGCGGATGAACTATCATACCTGTTC
TACAACATCATAGCCTCCAAACTGGATAAGTCATCGATGGAATACAAAAC
CATTGAGAGAATGGTTGGCATGTGGACGTCGTTTGCCTCCAGTGGGAATC
CAAATTGCCCAGAACTGGGATCTGCCAAATGGGAAGCCGTCCAGCTTAAA
GAAAATGCCGTGGAGAAGTGCTTCAACATTAGCCACGATCTTGAGATGCG
AGATTTGCCGGAGTCCGATTGCCTAGCCGTTTGGGATACATTTTATCCCA
GGGAGTCGCTCTTCTAGAAGCTTTCTAGACCAT
BS07479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 1701 | CG2505-PB | 1..1701 | 17..1717 | 8505 | 100 | Plus |
alpha-Est2-RA | 1701 | CG2505-PA | 1..1701 | 17..1717 | 8505 | 100 | Plus |
alpha-Est1-RA | 1698 | CG1031-PA | 108..739 | 124..755 | 505 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-RB | 2141 | CG2505-RB | 288..1989 | 16..1717 | 8510 | 100 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 105..1806 | 16..1717 | 8510 | 100 | Plus |
alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 124..755 | 505 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7543890..7545078 | 529..1717 | 5945 | 100 | Plus |
3R | 32079331 | 3R | 7543037..7543504 | 64..531 | 2340 | 100 | Plus |
3R | 32079331 | 3R | 7546931..7547128 | 755..558 | 405 | 80.3 | Minus |
3R | 32079331 | 3R | 7542849..7542898 | 16..65 | 250 | 100 | Plus |
3R | 32079331 | 3R | 7546158..7546361 | 1525..1322 | 240 | 74.5 | Minus |
Blast to na_te.dros performed 2014-11-26 16:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 611..660 | 115 | 70 | Plus |
BS07479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:37 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 1..1701 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:35 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 107..1807 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:22 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1806 | 17..1717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:37 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1811 | 16..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:27 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est2-RA | 106..1806 | 17..1717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:27 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7542850..7542896 | 17..63 | 100 | -> | Plus |
3R | 7543037..7543503 | 64..530 | 100 | -> | Plus |
3R | 7543892..7545078 | 531..1717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:22 Download gff for
BS07479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3368572..3368618 | 17..63 | 100 | -> | Plus |
arm_3R | 3368759..3369225 | 64..530 | 100 | -> | Plus |
arm_3R | 3369614..3370800 | 531..1717 | 100 | | Plus |
BS07479.pep Sequence
Translation from 16 to 1716
> BS07479.pep
MEVQVGWPKLIKMGAQLVGHKVQQYRLSTGHTVILDTKYGQVRGLQRKTV
YDKEPYFAFEGIPYAKPPVGDLRFRAPQPPEPWQGVLNCTTNRSKPMQRN
MLLGIVEGSEDCLHLNVYVKALKSEKPLPVIVWIYGGGFQKGEASRDIYS
PDYFMKKPVVFVAINYRLAALGFLSLKDPKLDVPGNAGLKDQVMALRWIS
QNIAHFNGDPNNITLMGESAGSASVHVMMTTEQTRGLFHKAIMQSGCALS
EWVESPDNNWAFRLAQNLGYKGDEKDADVLSFLSKVCARQIAAIDQDVIN
LDEVRSFLLFAFGPVIEPYETDHCVVPKRHKDLLSEAWGNDIPVIVGGNS
FEGLFSYQLVRKDPWALKNFHNILPREVRETSSLEGQDLLVRRLKQLYFN
NEMQESMEMFEALNIFSHRQIWHDTHRFILARQSYAPKTPTYLYRFDFDS
PHFNQFRRLVCGDRIRGVAHADELSYLFYNIIASKLDKSSMEYKTIERMV
GMWTSFASSGNPNCPELGSAKWEAVQLKENAVEKCFNISHDLEMRDLPES
DCLAVWDTFYPRESLF*
BS07479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est2-PB | 566 | CG2505-PB | 1..566 | 1..566 | 3018 | 100 | Plus |
alpha-Est2-PA | 566 | CG2505-PA | 1..566 | 1..566 | 3018 | 100 | Plus |
alpha-Est1-PA | 565 | CG1031-PA | 1..565 | 1..566 | 1816 | 59.6 | Plus |
CG6018-PA | 566 | CG6018-PA | 1..566 | 1..566 | 1761 | 56.2 | Plus |
alpha-Est8-PA | 574 | CG1121-PA | 11..574 | 11..566 | 1446 | 48.8 | Plus |