Clone BS07479 Report

Search the DGRC for BS07479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est2-RA
Protein status:BS07479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07479.3prime Sequence

932 bp (762 high quality bases) assembled on 2006-01-06

> BS07479.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGCGACTCCCTGGGATAAAATGTATCC
CAAACGGCTAGGCAATCGGACTCCGGCAAATCTCGCATCTCAAGATCGTG
GCTAATGTTGAAGCACTTCTCCACGGCATTTTCTTTAAGCTGGACGGCTT
CCCATTTGGCAGATCCCAGTTCTGGGCAATTTGGATTCCCACTGGAGGCA
AACGACGTCCACATGCCAACCATTCTCTCAATGGTTTTGTATTCCATCGA
TGACTTATCCAGTTTGGAGGCTATGATGTTGTAGAACAGGTATGATAGTT
CATCCGCATGGGCTACTCCGCGAATCCGATCGCCGCACACCAGTCGGCGA
AATTGATTGAAGTGCGGGGAGTCGAAGTCAAAACGATATAGATAGGTGGG
CGTTTTGGGGGCATAAGATTGACGGGCGAGAATAAAGCGATGCGTATCGT
GCCAAATCTGGCGATGCGAAAATATATTCAGGGCCTCGAACATCTCCATC
GATTCCTGCATCTCGTTGTTGAAGTAGAGTTGCTTTAGTCGCCGCACCAG
TAGATCCTGCCCTTCCAGACTGCTCGTTTCTCTAACCTCCCTTGGCAGGA
TGTTGTGAAAGTTTTTCAAGGCCCAAGGATCTTTTCTTACTAGTTGGTAG
GAAAACAAGCCCTCGAAAGAATTTCCACCGACAATAACGGGAATGTCGTT
GCCCCACGCTTCGGACAACAGATCCTTGTGCCTTTTGGGCACCACACAGT
GGTCGGTTTCGTAGGGTTCTATCACAGGACCAAATGCGAATAGTANGAAG
CTTCGCACCTCGTCCAAATTGATAACGTCCTGATCAATAGCCGCTATCTG
GCGTGCGCAAACCTTACTAAGAAAGCTTAGTACATCCGCATCCTTCTCGT
CGCCCTTGTAGCCCAGATTCTGGGGCAGCCGG

BS07479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2505-PA 1701 alpha-Est2-RA 786..1701 932..17 4536 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RA 1958 CG2505-RA 891..1806 932..17 4554 99.8 Minus
alpha-Est2-RB 2141 CG2505-RB 1074..1989 932..17 4554 99.8 Minus
alpha-Est1-RA 2123 CG1031-RA 1495..1698 412..209 240 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7544163..7545078 932..17 4554 99.8 Minus
3R 32079331 3R 7546158..7546361 209..412 240 74.5 Plus
Blast to na_te.dros performed on 2015-02-03 12:08:13 has no hits.

BS07479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:06 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 786..1701 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:39 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 786..1701 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:47 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 891..1810 12..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:43 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 891..1810 12..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:43 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7544163..7545082 12..932 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:47 Download gff for BS07479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3369885..3370804 12..932 99   Minus

BS07479.5prime Sequence

921 bp (832 high quality bases) assembled on 2006-01-06

> BS07479.5prime
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAAGACGTTATCAATTTGGA

BS07479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2505-PA 1701 alpha-Est2-RA 1..905 17..921 4500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 2141 CG2505-RB 288..1193 16..921 4515 99.9 Plus
alpha-Est2-RA 1958 CG2505-RA 105..1010 16..921 4515 99.9 Plus
alpha-Est1-RA 2123 CG1031-RA 294..925 124..755 550 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7543037..7543504 64..531 2340 100 Plus
3R 32079331 3R 7543890..7544282 529..921 1950 99.7 Plus
3R 32079331 3R 7546931..7547128 755..558 405 80.3 Minus
3R 32079331 3R 7542849..7542898 16..65 250 100 Plus
Blast to na_te.dros performed 2015-02-13 08:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 586..635 611..660 115 70 Plus

BS07479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:07 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:40 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2505-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:55:47 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 105..1009 16..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:20 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 105..1009 16..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:20 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7542849..7542896 16..63 100 -> Plus
3R 7543037..7543503 64..530 100 -> Plus
3R 7543892..7544281 531..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:55:47 Download gff for BS07479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3369614..3370003 531..920 99   Plus
arm_3R 3368571..3368618 16..63 100 -> Plus
arm_3R 3368759..3369225 64..530 100 -> Plus

BS07479.complete Sequence

1733 bp assembled on 2008-01-03

GenBank Submission: FJ635882

> BS07479.complete
GAAGTTATCAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCA
AGATGGGAGCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCC
ACGGGTCACACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACT
CCAAAGGAAGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCA
TTCCGTACGCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAG
CCACCGGAACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAA
GCCCATGCAGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATT
GTTTGCATTTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTG
CCCGTAATTGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTC
CAGGGATATTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCG
TCGCTATCAACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGAC
CCGAAGCTGGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGC
TCTGCGTTGGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACA
ACATCACATTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATG
ATGACCACAGAGCAAACACGTGGTCTCTTCCATAAGGCTATCATGCAATC
GGGATGTGCCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCAT
TCCGGCTGGCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGAT
GTACTAAGCTTTCTTAGTAAGGTTTGCGCACGCCAGATAGCGGCTATTGA
TCAGGACGTTATCAATTTGGACGAGGTGCGAAGCTTCCTACTATTCGCAT
TTGGTCCTGTGATAGAACCCTACGAAACCGACCACTGTGTGGTGCCCAAA
AGGCACAAGGATCTGTTGTCCGAAGCGTGGGGCAACGACATTCCCGTTAT
TGTCGGTGGAAATTCTTTCGAGGGCTTGTTTTCCTACCAACTAGTAAGAA
AAGATCCTTGGGCCTTGAAAAACTTTCACAACATCCTGCCAAGGGAGGTT
AGAGAAACGAGCAGTCTGGAAGGGCAGGATCTACTGGTGCGGCGACTAAA
GCAACTCTACTTCAACAACGAGATGCAGGAATCGATGGAGATGTTCGAGG
CCCTGAATATATTTTCGCATCGCCAGATTTGGCACGATACGCATCGCTTT
ATTCTCGCCCGTCAATCTTATGCCCCCAAAACGCCCACCTATCTATATCG
TTTTGACTTCGACTCCCCGCACTTCAATCAATTTCGCCGACTGGTGTGCG
GCGATCGGATTCGCGGAGTAGCCCATGCGGATGAACTATCATACCTGTTC
TACAACATCATAGCCTCCAAACTGGATAAGTCATCGATGGAATACAAAAC
CATTGAGAGAATGGTTGGCATGTGGACGTCGTTTGCCTCCAGTGGGAATC
CAAATTGCCCAGAACTGGGATCTGCCAAATGGGAAGCCGTCCAGCTTAAA
GAAAATGCCGTGGAGAAGTGCTTCAACATTAGCCACGATCTTGAGATGCG
AGATTTGCCGGAGTCCGATTGCCTAGCCGTTTGGGATACATTTTATCCCA
GGGAGTCGCTCTTCTAGAAGCTTTCTAGACCAT

BS07479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 1701 CG2505-PB 1..1701 17..1717 8505 100 Plus
alpha-Est2-RA 1701 CG2505-PA 1..1701 17..1717 8505 100 Plus
alpha-Est1-RA 1698 CG1031-PA 108..739 124..755 505 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-RB 2141 CG2505-RB 288..1989 16..1717 8510 100 Plus
alpha-Est2-RA 1958 CG2505-RA 105..1806 16..1717 8510 100 Plus
alpha-Est1-RA 2123 CG1031-RA 294..925 124..755 505 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7543890..7545078 529..1717 5945 100 Plus
3R 32079331 3R 7543037..7543504 64..531 2340 100 Plus
3R 32079331 3R 7546931..7547128 755..558 405 80.3 Minus
3R 32079331 3R 7542849..7542898 16..65 250 100 Plus
3R 32079331 3R 7546158..7546361 1525..1322 240 74.5 Minus
Blast to na_te.dros performed 2014-11-26 16:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 586..635 611..660 115 70 Plus

BS07479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:37 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 1..1701 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:35 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 107..1807 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:22 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1806 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:37 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1811 16..1722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:27 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est2-RA 106..1806 17..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:27 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7542850..7542896 17..63 100 -> Plus
3R 7543037..7543503 64..530 100 -> Plus
3R 7543892..7545078 531..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:22 Download gff for BS07479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3368572..3368618 17..63 100 -> Plus
arm_3R 3368759..3369225 64..530 100 -> Plus
arm_3R 3369614..3370800 531..1717 100   Plus

BS07479.pep Sequence

Translation from 16 to 1716

> BS07479.pep
MEVQVGWPKLIKMGAQLVGHKVQQYRLSTGHTVILDTKYGQVRGLQRKTV
YDKEPYFAFEGIPYAKPPVGDLRFRAPQPPEPWQGVLNCTTNRSKPMQRN
MLLGIVEGSEDCLHLNVYVKALKSEKPLPVIVWIYGGGFQKGEASRDIYS
PDYFMKKPVVFVAINYRLAALGFLSLKDPKLDVPGNAGLKDQVMALRWIS
QNIAHFNGDPNNITLMGESAGSASVHVMMTTEQTRGLFHKAIMQSGCALS
EWVESPDNNWAFRLAQNLGYKGDEKDADVLSFLSKVCARQIAAIDQDVIN
LDEVRSFLLFAFGPVIEPYETDHCVVPKRHKDLLSEAWGNDIPVIVGGNS
FEGLFSYQLVRKDPWALKNFHNILPREVRETSSLEGQDLLVRRLKQLYFN
NEMQESMEMFEALNIFSHRQIWHDTHRFILARQSYAPKTPTYLYRFDFDS
PHFNQFRRLVCGDRIRGVAHADELSYLFYNIIASKLDKSSMEYKTIERMV
GMWTSFASSGNPNCPELGSAKWEAVQLKENAVEKCFNISHDLEMRDLPES
DCLAVWDTFYPRESLF*

BS07479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est2-PB 566 CG2505-PB 1..566 1..566 3018 100 Plus
alpha-Est2-PA 566 CG2505-PA 1..566 1..566 3018 100 Plus
alpha-Est1-PA 565 CG1031-PA 1..565 1..566 1816 59.6 Plus
CG6018-PA 566 CG6018-PA 1..566 1..566 1761 56.2 Plus
alpha-Est8-PA 574 CG1121-PA 11..574 11..566 1446 48.8 Plus