Clone BS07480 Report

Search the DGRC for BS07480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG3285-RA
Protein status:BS07480.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07480.3prime Sequence

909 bp (857 high quality bases) assembled on 2006-01-06

> BS07480.3prime
ATGGTCTAGAAAGCTTCTAAGCCGCCAGTAGCGATTTTCCGTTGGTCTCC
TCCAGAAAAAAGCAGAAGTAGAGAAACGAGAAAAACGTAATTCCGCTACA
GCTCCACATGGTAACCGAGGTGCCCCAAACAGCCATACAGATGGGAAAGA
TTTTCAGTGTGAGAAATACTGTACTGCTTAGGATCACCACAAAGGTGGAG
ACGCTCACAGATCGAATCTTGGCCGGAAAGAGCTCGACGAGCACAACGAA
TAGGCATCCCACCAAGCCGATGTTGCAGAGGAATACGAAGCAGGACAAGA
TCACAAGGGGTAACCAGTCAACCGAAGAGAGATCAGCCGCCTCGGCGAAG
AAGGTGAAGGTGCCGAAGGCAGTTAGGCAAACGGAGGCTCCCAAGGTGGA
GGTCAGCATGAGTATCCTCCTTCCGTACTTATCGCACAACAGAGTGGTCA
CGTAGTTGCCCACGATCTGGAGCACTCCGATGATGATGGTGCACATGCCC
AGATTCAGAGTTGTGTGGGATGCGGCAAAGACGTCCGCCAAGTAGGTGGT
CACACAAAAACTGGCACTGAATTGATTGCTAATAAGCAGGACAGCGGCAG
AAGCGTAGGCCTTAAATGCAGGTCTGGTTATGAAATCTCTGTAGTCGAAG
GACTTGGCCTTCTCCGTCTGCTCCTTAATAAGGAGATACTTCATCTCTTC
GAACTCGTCCTCAGCCTTGATGTCATTTTTCCTGATGTTTTTGTAGAACA
TGAACGACCTCTTGGCCGCTTCGAATTTTCCCTTGCGAACTAGGTGATGT
GGGGTTTCCGGAATGAGGAAGTTGCAGATAAAATAACAGACGGGCAGCCC
GATGATGAACGGGGGAGACGTAAAGTAATCCACTCTCGTGAACACTATAT
AGCCCGCCA

BS07480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PA 1401 CG3285-RA 509..1401 909..17 4440 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 544..1436 909..17 4450 99.9 Minus
CG3285-RA 1631 CG3285-RA 544..1436 909..17 4450 99.9 Minus
CG15408-RA 1565 CG15408-RA 1021..1110 494..405 195 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3332003..3332415 630..218 2065 100 Minus
2L 23513712 2L 3331665..3331943 909..631 1380 99.6 Minus
2L 23513712 2L 3332479..3332681 219..17 1015 100 Minus
2L 23513712 2L 3334178..3334267 494..405 195 81.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:56 has no hits.

BS07480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:08 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 510..1401 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:42 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 510..1401 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:17 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 545..1439 10..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:23 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 545..1439 10..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:23 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3331666..3331943 631..908 99 -> Minus
2L 3332003..3332415 218..630 100 -> Minus
2L 3332481..3332684 14..217 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:17 Download gff for BS07480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3331666..3331943 631..908 99 -> Minus
arm_2L 3332003..3332415 218..630 100 -> Minus
arm_2L 3332481..3332684 14..217 98 -> Minus

BS07480.5prime Sequence

954 bp (846 high quality bases) assembled on 2006-01-06

> BS07480.5prime
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTTGCGCATCCACACAACTCTGAATCTGGGCATGTGCACCATCAT
CATC

BS07480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PA 1401 CG3285-RA 1..891 17..907 4455 100 Plus
CG3285-PA 1401 CG3285-RA 900..939 915..954 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 35..974 16..954 4645 99.7 Plus
CG3285-RA 1631 CG3285-RA 35..974 16..954 4645 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3331612..3331943 472..803 1660 100 Plus
2L 23513712 2L 3331118..3331347 111..340 1150 100 Plus
2L 23513712 2L 3332003..3332154 804..954 680 98 Plus
2L 23513712 2L 3331413..3331544 340..471 660 100 Plus
2L 23513712 2L 3330962..3331056 16..110 475 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:17:25 has no hits.

BS07480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:09 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 1..939 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:43 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-PA 1..939 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:56 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 23..974 2..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:11 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 23..974 2..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:11 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3331414..3331544 341..471 100 -> Plus
2L 3331612..3331943 472..803 100 -> Plus
2L 3330950..3331056 2..110 95 -> Plus
2L 3331118..3331347 111..340 100 -> Plus
2L 3332003..3332154 804..954 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:56 Download gff for BS07480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3330950..3331056 2..110 95 -> Plus
arm_2L 3331118..3331347 111..340 100 -> Plus
arm_2L 3331414..3331544 341..471 100 -> Plus
arm_2L 3331612..3331943 472..803 100 -> Plus
arm_2L 3332003..3332154 804..954 98   Plus

BS07480.complete Sequence

1433 bp (1433 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635883

> BS07480.complete
GAAGTTATCAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCG
CCAATCCGAATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTC
ACCCTGCTGCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTG
GATGTCGCCGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATT
TTCCCGTCCTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATT
GGCAGTGTGATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGG
TCGCAAGATGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGT
GCCTGATTTACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTG
ATGGCCGGCATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCAT
AAGCGAAATCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCT
TACTATCGGTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGA
GTGGATTACTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTA
TTTTATCTGCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCA
AGGGAAAATTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATC
AGGAAAAATGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCT
CCTTATTAAGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATT
TCATAACCAGACCTGCATTTAAGGCCTACGCTTCTGCCGCTGTCCTGCTT
ATTAGCAATCAATTCAGTGCCAGTTTTTGTGTGACCACCTACTTGGCGGA
CGTCTTTGCCGCATCCCACACAACTCTGAATCTGGGCATGTGCACCATCA
TCATCGGAGTGCTCCAGATCGTGGGCAACTACGTGACCACTCTGTTGTGC
GATAAGTACGGAAGGAGGATACTCATGCTGACCTCCACCTTGGGAGCCTC
CGTTTGCCTAACTGCCTTCGGCACCTTCACCTTCTTCGCCGAGGCGGCTG
ATCTCTCTTCGGTTGACTGGTTACCCCTTGTGATCTTGTCCTGCTTCGTA
TTCCTCTGCAACATCGGCTTGGTGGGATGCCTATTCGTTGTGCTCGTCGA
GCTCTTTCCGGCCAAGATTCGATCTGTGAGCGTCTCCACCTTTGTGGTGA
TCCTAAGCAGTACAGTATTTCTCACACTGAAAATCTTTCCCATCTGTATG
GCTGTTTGGGGCACCTCGGTTACCATGTGGAGCTGTAGCGGAATTACGTT
TTTCTCGTTTCTCTACTTCTGCTTTTTTCTGGAGGAGACCAACGGAAAAT
CGCTACTGGCGGCTTAGAAGCTTTCTAGACCAT

BS07480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1401 CG3285-PB 1..1401 17..1417 7005 100 Plus
CG3285-RA 1401 CG3285-PA 1..1401 17..1417 7005 100 Plus
CG15408-RA 1401 CG15408-PA 924..1013 940..1029 195 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-RB 1595 CG3285-RB 35..1436 16..1417 7010 100 Plus
CG3285-RA 1631 CG3285-RA 35..1436 16..1417 7010 100 Plus
CG15408-RA 1565 CG15408-RA 1021..1110 940..1029 195 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3332003..3332415 804..1216 2065 100 Plus
2L 23513712 2L 3331612..3331943 472..803 1660 100 Plus
2L 23513712 2L 3331118..3331347 111..340 1150 100 Plus
2L 23513712 2L 3332479..3332681 1215..1417 1015 100 Plus
2L 23513712 2L 3331413..3331544 340..471 660 100 Plus
2L 23513712 2L 3330962..3331056 16..110 475 100 Plus
2L 23513712 2L 3334178..3334267 940..1029 195 81.1 Plus
Blast to na_te.dros performed on 2014-11-26 21:48:15 has no hits.

BS07480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:43 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1401 17..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:47 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1414 9..1424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:11 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 36..1436 17..1417 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:43 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 1..1414 9..1424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:39 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
CG3285-RA 36..1436 17..1417 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:39 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3330963..3331056 17..110 100 -> Plus
2L 3331118..3331347 111..340 100 -> Plus
2L 3331414..3331544 341..471 100 -> Plus
2L 3331612..3331943 472..803 100 -> Plus
2L 3332003..3332415 804..1216 100 -> Plus
2L 3332481..3332681 1217..1417 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:11 Download gff for BS07480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3331414..3331544 341..471 100 -> Plus
arm_2L 3330963..3331056 17..110 100 -> Plus
arm_2L 3331118..3331347 111..340 100 -> Plus
arm_2L 3331612..3331943 472..803 100 -> Plus
arm_2L 3332003..3332415 804..1216 100 -> Plus
arm_2L 3332481..3332681 1217..1417 100   Plus

BS07480.pep Sequence

Translation from 16 to 1416

> BS07480.pep
MTFKLRLASVFANPNCLLGRRIRHQFLVTLLLNIATFSHGLGVGWMSPVM
RDLQTDESPLDFPVLVSQVSWIGSLVGIGSVMGNLIAGLLMDRIGRKMVL
FFIAIPYTTFWCLIYFVQSVEFLYIGRLMAGITGGACYVVLPTFISEIAD
TNVRGRLGSIILLSVNTGVLAGYIVSTRVDYFTSPPFIIGLPVCYFICNF
LIPETPHHLVRKGKFEAAKRSFMFYKNIRKNDIKAEDEFEEMKYLLIKEQ
TEKAKSFDYRDFITRPAFKAYASAAVLLISNQFSASFCVTTYLADVFAAS
HTTLNLGMCTIIIGVLQIVGNYVTTLLCDKYGRRILMLTSTLGASVCLTA
FGTFTFFAEAADLSSVDWLPLVILSCFVFLCNIGLVGCLFVVLVELFPAK
IRSVSVSTFVVILSSTVFLTLKIFPICMAVWGTSVTMWSCSGITFFSFLY
FCFFLEETNGKSLLAA*

BS07480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3285-PB 466 CG3285-PB 1..466 1..466 2398 100 Plus
CG3285-PA 466 CG3285-PA 1..466 1..466 2398 100 Plus
CG15408-PA 466 CG15408-PA 2..464 7..464 1250 51.6 Plus
CG33282-PB 460 CG33282-PB 7..458 15..464 1120 46.5 Plus
CG15406-PA 469 CG15406-PA 16..467 23..463 902 39.1 Plus