Clone Sequence Records
BS07485.3prime Sequence
932 bp (742 high quality bases) assembled on 2006-01-06
> BS07485.3prime
ATGGTCTAGAAAGCTTTCAAATGTTATCCTCCAGCAGGAGATCGTTGTCA
TCGCCCCGGTCCGGCAGGCAGACAAAGAATTCGAGTAAATTCAGGATGGG
ACCACGCGAGAAGGGATTCTGATATCGTCCGCGTTTGTCCCGCAAGTAAG
GATAACGCTTGTAGTTAAACATCTCGTTTGTGGTGAGATTCATGCAGGCG
TGCAGGATCGAAGTGCATGTGAGTATCCAACCCAAGCCGCAGAACACAAC
CGCCTCGATGAGTCCCAGCACATAGAGCATCGTGAAGCCCTCGATCATCA
CGCAATAGCAGGCAAAGTAGATGGTGAACGAGCAGTTGACGGCCACCGAG
AGGACGAACAGGAAGAACCACATTCTGTTCCTCAGTCCCACGCAGTTGTA
GATAAAGGGACAGTGGTGGTCAAAGTACGAGACACACCGGTTGCACACGC
GGCAGTGTTTGGCTCGCAGCGGCCGGAGGCACCTGCAGCTGTGACATAGT
CGGGTTAGCATCACATTTCGCTTCTTCAGTTTGTCGAAGTACGGAATCTG
CTTGATGGCCCGGTAGTAGGCATCCGAACTGAGTGGTATATACCCCGGAT
CCCGGCGATTGGCAATGGCCCAGCTTATCCACATTACGGCGTTCCAGTAT
ATAAAGCAATAGTGCGAGCGTCTCAATATGTTCCACGTAATGGGAATCGC
ACGGATCATGTACATGGGATAGCCCCAAAGTAGCACAGAGAAGAGAAATA
GAAACAGCGGTCCCTTGGAGTCTCCAGCTCCGCCAAAGAGCCAGCCCCAA
CTTTCCGAGACTGANGGAATCCAACGGGACTTCTTCTTCACCTCGCCGTA
CAGCAGGCGCACCACATCCTGGTGCTGATGAGCCTGTGCCAACATGATCG
GCGTCTTTCCATTCTTGTCCCTCGGTTCCAGA
BS07485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6618-PA | 1758 | Patsas-RA | 843..1758 | 932..17 | 4561 | 99.8 | Minus |
| CG6618-PB | 1665 | Patsas-RB | 843..1566 | 932..209 | 3601 | 99.8 | Minus |
| CG6618-PB | 1665 | Patsas-RB | 1621..1665 | 209..165 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 1068..1983 | 932..17 | 4569 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12101495..12102218 | 209..932 | 3609 | 99.9 | Plus |
| 2L | 23513712 | 2L | 12101248..12101440 | 17..209 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:31:31 has no hits.
BS07485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:14 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PA | 844..1758 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:50 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PA | 844..1758 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:53 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1069..1983 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:29 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1069..1983 | 17..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:29 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12101248..12101439 | 17..208 | 100 | <- | Plus |
| 2L | 12101495..12102217 | 209..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:53 Download gff for
BS07485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12101248..12101439 | 17..208 | 100 | <- | Plus |
| arm_2L | 12101495..12102217 | 209..931 | 99 | | Plus |
BS07485.5prime Sequence
880 bp (841 high quality bases) assembled on 2006-01-06
> BS07485.5prime
GAAGTTATCAGTCGACATGGCCTCGAAGGTGCATCCAAGTCCGGGGGCGG
CGCGCAGTGTGTGGGCGTTGCCCCTAACCGCCTCCTCCTCCTGCAACATG
GTCGTCGCGGAGGAGGATGGCCATGCCCACGCCGACGACATCCATTTGGA
TCATCGACCGCATTCGCCGCCATTAACGGGTCGCGGCACGGACGGTGGAC
ACGGCAGTAGCGGCGTCGAGGACCACGAAAATGTGCTCCTCTTTGAGGGG
CTCGATGGTGCCACCACCGTGAGTTTGGACGACATCTTCGATATTATCAA
GAACGGAGAGGTCAGCGAGGTGGAGAATCTCGTGGACAAGTTCGGCATGG
AGTGTCTGTCGGCCAGGGATCGTCATGGCTACACGCCAGCCCACTGGATA
GCTCTCAACGGCAATGTCCAGCTGATGCGATACCTCATCGAACGCACGGC
TCCGATCGATCTGCCCTGTTTGGGTACGCAGGGTCCACGGCCCATTCACT
GGGCGTGCAGGAAGGGTCATGCGTCCGTGGTGCAGGTCCTCCTCCAGGCT
GGAGTTGCCGTCAATGCGGCGGACTTCAAGGGACTTACACCCCTCCATCT
CGCCTGCATGTACGGCCGTACTGCAACGGCGGCCTATCTTCTTGGAATGG
GAGCGCTGAACAACCTAACTGACATAAACGGCGATACGGCACTCCACTGG
GCAGCGTACAAGGGACATGCCGATCTTATGCGACTCCTCATGTATTCCGG
CGTTGAGCTTCAAAAGACGGACAACTTTGGATCGACTCCACTGCATCTGG
CTTGCCTGTCTGGTAACATGACGTGCGTTCGCCTGCTGTGCGAGAAGTCC
CAGCTGGATCTGGAACCGAGGGACAAGAAT
BS07485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6618-PA | 1758 | Patsas-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG6618-PB | 1665 | Patsas-RB | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 224..1089 | 15..880 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12102197..12103062 | 880..15 | 4330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:12:00 has no hits.
BS07485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:15 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PB | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:51 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6618-PB | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:30 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1089 | 12..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:53 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1089 | 12..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:53 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12102197..12103065 | 12..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:30 Download gff for
BS07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12102197..12103065 | 12..880 | 99 | | Minus |
BS07485.complete Sequence
1790 bp assembled on 2008-01-03
GenBank Submission: FJ635884
> BS07485.complete
GAAGTTATCAGTCGACATGGCCTCGAAGGTGCATCCAAGTCCGGGGGCGG
CGCGCAGTGTGTGGGCGTTGCCCCTAACCGCCTCCTCCTCCTGCAACATG
GTCGTCGCGGAGGAGGATGGCCATGCCCACGCCGACGACATCCATTTGGA
TCATCGACCGCATTCGCCGCCATTAACGGGTCGCGGCACGGACGGTGGAC
ACGGCAGTAGCGGCGTCGAGGACCACGAAAATGTGCTCCTCTTTGAGGGG
CTCGATGGTGCCACCACCGTGAGTTTGGACGACATCTTCGATATTATCAA
GAACGGAGAGGTCAGCGAGGTGGAGAATCTCGTGGACAAGTTCGGCATGG
AGTGTCTGTCGGCCAGGGATCGTCATGGCTACACGCCAGCCCACTGGATA
GCTCTCAACGGCAATGTCCAGCTGATGCGATACCTCATCGAACGCACGGC
TCCGATCGATCTGCCCTGTTTGGGTACGCAGGGTCCACGGCCCATTCACT
GGGCGTGCAGGAAGGGTCATGCGTCCGTGGTGCAGGTCCTCCTCCAGGCT
GGAGTTGCCGTCAATGCGGCGGACTTCAAGGGACTTACACCCCTCCATCT
CGCCTGCATGTACGGCCGTACTGCAACGGCGGCCTATCTTCTTGGAATGG
GAGCGCTGAACAACCTAACTGACATAAACGGCGATACGGCACTCCACTGG
GCAGCGTACAAGGGACATGCCGATCTTATGCGACTCCTCATGTATTCCGG
CGTTGAGCTTCAAAAGACGGACAACTTTGGATCGACTCCACTGCATCTGG
CTTGCCTGTCTGGTAACATGACGTGCGTTCGCCTGCTGTGCGAGAAGTCC
CAGCTGGATCTGGAACCGAGGGACAAGAATGGAAAGACGCCGATCATGTT
GGCACAGGCTCATCAGCACCAGGATGTGGTGCGCCTGCTGTACGGCGAGG
TGAAGAAGAAGTCCCGTTGGATTCCCTCAGTCTCGGAAAGTTGGGGCTGG
CTCTTTGGCGGAGCTGGAGACTCCAAGGGACCGCTGTTTCTATTTCTCTT
CTCTGTGCTACTTTGGGGCTATCCCATGTACATGATCCGTGCGATTCCCA
TTACGTGGAACATATTGAGACGCTCGCACTATTGCTTTATATACTGGAAC
GCCGTAATGTGGATAAGCTGGGCCATTGCCAATCGCCGGGATCCGGGGTA
TATACCACTCAGTTCGGATGCCTACTACCGGGCCATCAAGCAGATTCCGT
ACTTCGACAAACTGAAGAAGCGAAATGTGATGCTAACCCGACTATGTCAC
AGCTGCAGGTGCCTCCGGCCGCTGCGAGCCAAACACTGCCGCGTGTGCAA
CCGGTGTGTCTCGTACTTTGACCACCACTGTCCCTTTATCTACAACTGCG
TGGGACTGAGGAACAGAATGTGGTTCTTCCTGTTCGTCCTCTCGGTGGCC
GTCAACTGCTCGTTCACCATCTACTTTGCCTGCTATTGCGTGATGATCGA
GGGCTTCACGATGCTCTATGTGCTGGGACTCATCGAGGCGGTTGTGTTCT
GCGGCTTGGGTTGGATACTCACATGCACTTCGATCCTGCACGCCTGCATG
AATCTCACCACAAACGAGATGTTTAACTACAAGCGTTATCCTTACTTGCG
GGACAAACGCGGACGATATCAGAATCCCTTCTCGCGTGGTCCCATCCTGA
ATTTACTCGAATTCTTTGTCTGCCTGCCGGACCGGGGCGATGACAACGAT
CTCCTGCTGGAGGATAACATTTGAAAGCTTTCTAGACCAT
BS07485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 1758 | CG6618-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-RA | 2466 | CG6618-RA | 224..1983 | 15..1774 | 8800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12101495..12103062 | 1582..15 | 7840 | 100 | Minus |
| 2L | 23513712 | 2L | 12101248..12101440 | 1774..1582 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:55:33 has no hits.
BS07485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:38 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 1..1758 | 17..1774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:51 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 226..1982 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:00 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 226..1982 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:38 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 221..1983 | 12..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:48 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patsas-RA | 226..1982 | 17..1773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:48 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12101249..12101439 | 1583..1773 | 100 | <- | Minus |
| 2L | 12101495..12103060 | 17..1582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:00 Download gff for
BS07485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12101249..12101439 | 1583..1773 | 100 | <- | Minus |
| arm_2L | 12101495..12103060 | 17..1582 | 100 | | Minus |
BS07485.pep Sequence
Translation from 16 to 1773
> BS07485.pep
MASKVHPSPGAARSVWALPLTASSSCNMVVAEEDGHAHADDIHLDHRPHS
PPLTGRGTDGGHGSSGVEDHENVLLFEGLDGATTVSLDDIFDIIKNGEVS
EVENLVDKFGMECLSARDRHGYTPAHWIALNGNVQLMRYLIERTAPIDLP
CLGTQGPRPIHWACRKGHASVVQVLLQAGVAVNAADFKGLTPLHLACMYG
RTATAAYLLGMGALNNLTDINGDTALHWAAYKGHADLMRLLMYSGVELQK
TDNFGSTPLHLACLSGNMTCVRLLCEKSQLDLEPRDKNGKTPIMLAQAHQ
HQDVVRLLYGEVKKKSRWIPSVSESWGWLFGGAGDSKGPLFLFLFSVLLW
GYPMYMIRAIPITWNILRRSHYCFIYWNAVMWISWAIANRRDPGYIPLSS
DAYYRAIKQIPYFDKLKKRNVMLTRLCHSCRCLRPLRAKHCRVCNRCVSY
FDHHCPFIYNCVGLRNRMWFFLFVLSVAVNCSFTIYFACYCVMIEGFTML
YVLGLIEAVVFCGLGWILTCTSILHACMNLTTNEMFNYKRYPYLRDKRGR
YQNPFSRGPILNLLEFFVCLPDRGDDNDLLLEDNI*
BS07485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patsas-PA | 585 | CG6618-PA | 1..585 | 1..585 | 3198 | 100 | Plus |
| Hip14-PC | 637 | CG6017-PC | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Hip14-PA | 637 | CG6017-PA | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Hip14-PB | 655 | CG6017-PB | 47..589 | 91..569 | 519 | 27.6 | Plus |
| Ank2-PN | 1159 | CG34416-PN | 396..587 | 114..308 | 261 | 33.3 | Plus |
