Clone Sequence Records
BS07488.3prime Sequence
932 bp (846 high quality bases) assembled on 2006-01-06
> BS07488.3prime
ATGGTCTAGAAAGCTTCTAGTCTTTGGGAATCTCGTTCTCCATGCGAGTG
AGCGTTATGTTCCTGTCCGTCTGCGAGGCGTTGGCCACCTTGGAGCCGAA
CTCGCCGCCCCGGAGACGCATGCGCAAGTCCAGGGCCCTGATGTCCGTCA
TCAGCGAGTGCTGCTTGTTCTCCAGATCCACGTCGATTCGCTTGCCGTGC
TCCTCCAGCAGACTAAAGTTGGTCTTGCTCTCGTCGATCTTGACCTGCAG
TCGGCGTCGTATCTCTCGCAGCTTCTCCACCTCCAAGCAGAGCATGTCGT
GCGCCTGGTCCATGCACAGTTCCATGCCCGACCTCTGGGCACGATTCTCC
AGGCGTGTCTCGGCCAGCTTCAGTGCATCCGTCTTGTCACGCAGCGCATT
CTCCGAGGTGCGGATCTCGCACATGGCCTTCTCCATCTCCTCCTTCATCT
TGAGCTGCTGCCACTCCAGTTCGTTTCTGGCCCGCTGCGTCTCGAAGATC
CGTTTGCGGATGGTGTGCTCCGCCCGCTCCTGCTGCGACTGCAGCATGTT
GCGCGCCTTTTCGCGGCACACGAACAAAGCCTCCCGAATGGCGTACGTGT
CGGCCAGCTCATTCTCCGCCAGCAGCTTTATGTTCTTCACGTTCTCCAGC
CAGGACTCGTAGGAACAGGAGTTCTTGGGATTTCTCGTGGGATCCGGCTT
GTATGAGATATTGGCCGAGTTGCGATCGAGCGCCAGCTGTGAGTTGTCCA
GCTGCACCGCCTCCACCTTGAACTCGATCTCCAGGCCGATCTTGAAGCGC
ACTTCCTCCAGACGATTGAGCTTCTCCCACGCCTTCTGGCATCGATCGGC
CAGCAGGCGCTGGGTGTTCTCCAGCACGACCAGTTTCGTCTTGATCTCGG
TGTCGGCCTCATCGTAGGTGATCTCCGATCCG
BS07488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PA | 1299 | CG3085-RA | 431..1299 | 885..17 | 4320 | 99.8 | Minus |
CG3085-PA | 1299 | CG3085-RA | 384..427 | 932..889 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 651..1567 | 932..16 | 4525 | 99.7 | Minus |
CG3085-RA | 1670 | CG3085-RA | 572..1488 | 932..16 | 4525 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23076020..23076675 | 671..16 | 3280 | 100 | Minus |
2R | 25286936 | 2R | 23075702..23075962 | 932..672 | 1245 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:52:31 has no hits.
BS07488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:20 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 384..1299 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:58 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 384..1299 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:54 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 572..1491 | 11..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:43 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 572..1491 | 11..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:43 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075702..23075962 | 672..932 | 98 | -> | Minus |
2R | 23076020..23076678 | 11..671 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:54 Download gff for
BS07488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18963225..18963485 | 672..932 | 98 | -> | Minus |
arm_2R | 18963543..18964201 | 11..671 | 99 | | Minus |
BS07488.5prime Sequence
960 bp (769 high quality bases) assembled on 2006-01-06
> BS07488.5prime
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGAC
GGATGCACTG
BS07488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PA | 1299 | CG3085-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
CG3085-PA | 1299 | CG3085-RA | 891..945 | 906..960 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 268..1212 | 17..960 | 4700 | 99.9 | Plus |
CG3085-RA | 1670 | CG3085-RA | 189..1133 | 17..960 | 4700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23075530..23075962 | 228..660 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 23076020..23076320 | 661..960 | 1455 | 99.7 | Plus |
2R | 25286936 | 2R | 23075255..23075466 | 17..228 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:10:18 has no hits.
BS07488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:21 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:00 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:23 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 185..1133 | 9..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:23 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 185..1133 | 9..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:23 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075251..23075466 | 9..228 | 98 | -> | Plus |
2R | 23075531..23075962 | 229..660 | 100 | -> | Plus |
2R | 23076020..23076320 | 661..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:23 Download gff for
BS07488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18962774..18962989 | 9..228 | 98 | -> | Plus |
arm_2R | 18963054..18963485 | 229..660 | 100 | -> | Plus |
arm_2R | 18963543..18963843 | 661..960 | 99 | | Plus |
BS07488.complete Sequence
1331 bp (1331 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635885
> BS07488.complete
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGA
CGGATGCACTGAAGCTGGCCGAGACACGCCTGGAGAATCGTGCCCAGAGG
TCGGGCATGGAACTGTGCATGGACCAGGCGCACGACATGCTCTGCTTGGA
GGTGGAGAAGCTGCGAGAGATACGACGCCGACTGCAGGTCAAGATCGACG
AGAGCAAGACCAACTTTAGTCTGCTGGAGGAGCACGGCAAGCGAATCGAC
GTGGATCTGGAGAACAAGCAGCACTCGCTGATGACGGACATCAGGGCCCT
GGACTTGCGCATGCGTCTCCGGGGCGGCGAGTTCGGCTCCAAGGTGGCCA
ACGCCTCGCAGACGGACAGGAACATAACGCTCACTCGCATGGAGAACGAG
ATTCCCAAAGACTAGAAGCTTTCTAGACCAT
BS07488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1299 | CG3085-PB | 1..1299 | 17..1315 | 6495 | 100 | Plus |
CG3085-RA | 1299 | CG3085-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-RB | 1749 | CG3085-RB | 268..1567 | 17..1316 | 6500 | 100 | Plus |
CG3085-RA | 1670 | CG3085-RA | 189..1488 | 17..1316 | 6500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23076020..23076675 | 661..1316 | 3280 | 100 | Plus |
2R | 25286936 | 2R | 23075530..23075962 | 228..660 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 23075255..23075466 | 17..228 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:52:32 has no hits.
BS07488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:44 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 1..1299 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:49 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 183..1489 | 9..1321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:39 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 189..1487 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:44 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 183..1489 | 9..1321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:09 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3085-RA | 189..1487 | 17..1315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:09 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23075255..23075466 | 17..228 | 100 | -> | Plus |
2R | 23075531..23075962 | 229..660 | 100 | -> | Plus |
2R | 23076020..23076674 | 661..1315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:39 Download gff for
BS07488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18962778..18962989 | 17..228 | 100 | -> | Plus |
arm_2R | 18963054..18963485 | 229..660 | 100 | -> | Plus |
arm_2R | 18963543..18964197 | 661..1315 | 100 | | Plus |
BS07488.pep Sequence
Translation from 16 to 1314
> BS07488.pep
MAFRSVVTMEKPLQHISLTDWYARVNQMRNVADARRSDAFAIRHSSRSLR
NETRIEGDWANYETNEALTDRISELNRWRDIISKSFEKIEREIFMLQEEK
NATERELEALAGPISVIAECLTIRDGRLGSEITYDEADTEIKNELVVLEN
NQRLLADRCQKAWEKLNRLEEVRFKIGLEIEFKVEAVQLDNSQLALDRNS
ANISYKPDPTRNPKNSCSYESWLENVKNIKLLAENELADTYAIREALFVC
REKARNMLQSQQERAEHTIRKRIFETQRARNELEWQQLKMKEEMEKAMCE
IRTSENALRDKTDALKLAETRLENRAQRSGMELCMDQAHDMLCLEVEKLR
EIRRRLQVKIDESKTNFSLLEEHGKRIDVDLENKQHSLMTDIRALDLRMR
LRGGEFGSKVANASQTDRNITLTRMENEIPKD*
BS07488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3085-PB | 432 | CG3085-PB | 1..432 | 1..432 | 2192 | 100 | Plus |
CG3085-PA | 432 | CG3085-PA | 1..432 | 1..432 | 2192 | 100 | Plus |
CG32820-PB | 520 | CG32820-PB | 139..501 | 22..391 | 282 | 23.9 | Plus |
CG32819-PB | 520 | CG32819-PB | 139..501 | 22..391 | 282 | 23.9 | Plus |
CG17450-PC | 520 | CG17450-PC | 139..501 | 22..391 | 282 | 23.9 | Plus |