Clone BS07488 Report

Search the DGRC for BS07488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG3085-RA
Protein status:BS07488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07488.3prime Sequence

932 bp (846 high quality bases) assembled on 2006-01-06

> BS07488.3prime
ATGGTCTAGAAAGCTTCTAGTCTTTGGGAATCTCGTTCTCCATGCGAGTG
AGCGTTATGTTCCTGTCCGTCTGCGAGGCGTTGGCCACCTTGGAGCCGAA
CTCGCCGCCCCGGAGACGCATGCGCAAGTCCAGGGCCCTGATGTCCGTCA
TCAGCGAGTGCTGCTTGTTCTCCAGATCCACGTCGATTCGCTTGCCGTGC
TCCTCCAGCAGACTAAAGTTGGTCTTGCTCTCGTCGATCTTGACCTGCAG
TCGGCGTCGTATCTCTCGCAGCTTCTCCACCTCCAAGCAGAGCATGTCGT
GCGCCTGGTCCATGCACAGTTCCATGCCCGACCTCTGGGCACGATTCTCC
AGGCGTGTCTCGGCCAGCTTCAGTGCATCCGTCTTGTCACGCAGCGCATT
CTCCGAGGTGCGGATCTCGCACATGGCCTTCTCCATCTCCTCCTTCATCT
TGAGCTGCTGCCACTCCAGTTCGTTTCTGGCCCGCTGCGTCTCGAAGATC
CGTTTGCGGATGGTGTGCTCCGCCCGCTCCTGCTGCGACTGCAGCATGTT
GCGCGCCTTTTCGCGGCACACGAACAAAGCCTCCCGAATGGCGTACGTGT
CGGCCAGCTCATTCTCCGCCAGCAGCTTTATGTTCTTCACGTTCTCCAGC
CAGGACTCGTAGGAACAGGAGTTCTTGGGATTTCTCGTGGGATCCGGCTT
GTATGAGATATTGGCCGAGTTGCGATCGAGCGCCAGCTGTGAGTTGTCCA
GCTGCACCGCCTCCACCTTGAACTCGATCTCCAGGCCGATCTTGAAGCGC
ACTTCCTCCAGACGATTGAGCTTCTCCCACGCCTTCTGGCATCGATCGGC
CAGCAGGCGCTGGGTGTTCTCCAGCACGACCAGTTTCGTCTTGATCTCGG
TGTCGGCCTCATCGTAGGTGATCTCCGATCCG

BS07488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PA 1299 CG3085-RA 431..1299 885..17 4320 99.8 Minus
CG3085-PA 1299 CG3085-RA 384..427 932..889 220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 651..1567 932..16 4525 99.7 Minus
CG3085-RA 1670 CG3085-RA 572..1488 932..16 4525 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23076020..23076675 671..16 3280 100 Minus
2R 25286936 2R 23075702..23075962 932..672 1245 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 03:52:31 has no hits.

BS07488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:20 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 384..1299 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:58 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 384..1299 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:54 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 572..1491 11..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:43 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 572..1491 11..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:43 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23075702..23075962 672..932 98 -> Minus
2R 23076020..23076678 11..671 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:54 Download gff for BS07488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18963225..18963485 672..932 98 -> Minus
arm_2R 18963543..18964201 11..671 99   Minus

BS07488.5prime Sequence

960 bp (769 high quality bases) assembled on 2006-01-06

> BS07488.5prime
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGAC
GGATGCACTG

BS07488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PA 1299 CG3085-RA 1..890 17..906 4450 100 Plus
CG3085-PA 1299 CG3085-RA 891..945 906..960 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 268..1212 17..960 4700 99.9 Plus
CG3085-RA 1670 CG3085-RA 189..1133 17..960 4700 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23075530..23075962 228..660 2165 100 Plus
2R 25286936 2R 23076020..23076320 661..960 1455 99.7 Plus
2R 25286936 2R 23075255..23075466 17..228 1060 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:10:18 has no hits.

BS07488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:21 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 1..945 17..960 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:00 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-PA 1..945 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:23 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 185..1133 9..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:23 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 185..1133 9..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:23 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23075251..23075466 9..228 98 -> Plus
2R 23075531..23075962 229..660 100 -> Plus
2R 23076020..23076320 661..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:23 Download gff for BS07488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18962774..18962989 9..228 98 -> Plus
arm_2R 18963054..18963485 229..660 100 -> Plus
arm_2R 18963543..18963843 661..960 99   Plus

BS07488.complete Sequence

1331 bp (1331 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635885

> BS07488.complete
GAAGTTATCAGTCGACATGGCCTTCCGCTCGGTGGTTACGATGGAGAAGC
CGCTCCAGCACATTTCGCTGACGGACTGGTATGCCCGTGTGAACCAGATG
CGGAATGTGGCGGATGCCCGGAGGTCGGACGCCTTCGCCATCCGCCACTC
ATCCCGATCCTTGAGGAACGAGACGCGGATCGAGGGCGACTGGGCCAACT
ACGAGACAAATGAGGCTCTGACCGATCGCATCTCCGAGTTGAATCGCTGG
CGGGATATCATTTCCAAGTCCTTCGAGAAGATCGAGCGCGAGATATTCAT
GCTGCAGGAGGAGAAGAATGCCACGGAACGGGAGCTGGAGGCGTTGGCAG
GTCCGATTTCCGTGATAGCCGAGTGCCTGACCATAAGGGACGGTCGCCTC
GGATCGGAGATCACCTACGATGAGGCCGACACCGAGATCAAGAACGAACT
GGTCGTGCTGGAGAACAACCAGCGCCTGCTGGCCGATCGATGCCAGAAGG
CGTGGGAGAAGCTCAATCGTCTGGAGGAAGTGCGCTTCAAGATCGGCCTG
GAGATCGAGTTCAAGGTGGAGGCGGTGCAGCTGGACAACTCACAGCTGGC
GCTCGATCGCAACTCGGCCAATATCTCATACAAGCCGGATCCCACGAGAA
ATCCCAAGAACTCCTGTTCCTACGAGTCCTGGCTGGAGAACGTGAAGAAC
ATAAAGCTGCTGGCGGAGAATGAGCTGGCCGACACGTACGCCATTCGGGA
GGCTTTGTTCGTGTGCCGCGAAAAGGCGCGCAACATGCTGCAGTCGCAGC
AGGAGCGGGCGGAGCACACCATCCGCAAACGGATCTTCGAGACGCAGCGG
GCCAGAAACGAACTGGAGTGGCAGCAGCTCAAGATGAAGGAGGAGATGGA
GAAGGCCATGTGCGAGATCCGCACCTCGGAGAATGCGCTGCGTGACAAGA
CGGATGCACTGAAGCTGGCCGAGACACGCCTGGAGAATCGTGCCCAGAGG
TCGGGCATGGAACTGTGCATGGACCAGGCGCACGACATGCTCTGCTTGGA
GGTGGAGAAGCTGCGAGAGATACGACGCCGACTGCAGGTCAAGATCGACG
AGAGCAAGACCAACTTTAGTCTGCTGGAGGAGCACGGCAAGCGAATCGAC
GTGGATCTGGAGAACAAGCAGCACTCGCTGATGACGGACATCAGGGCCCT
GGACTTGCGCATGCGTCTCCGGGGCGGCGAGTTCGGCTCCAAGGTGGCCA
ACGCCTCGCAGACGGACAGGAACATAACGCTCACTCGCATGGAGAACGAG
ATTCCCAAAGACTAGAAGCTTTCTAGACCAT

BS07488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1299 CG3085-PB 1..1299 17..1315 6495 100 Plus
CG3085-RA 1299 CG3085-PA 1..1299 17..1315 6495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-RB 1749 CG3085-RB 268..1567 17..1316 6500 100 Plus
CG3085-RA 1670 CG3085-RA 189..1488 17..1316 6500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23076020..23076675 661..1316 3280 100 Plus
2R 25286936 2R 23075530..23075962 228..660 2165 100 Plus
2R 25286936 2R 23075255..23075466 17..228 1060 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:52:32 has no hits.

BS07488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:44 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 1..1299 17..1315 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:49 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 183..1489 9..1321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:39 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 189..1487 17..1315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:44 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 183..1489 9..1321 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:09 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3085-RA 189..1487 17..1315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:09 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23075255..23075466 17..228 100 -> Plus
2R 23075531..23075962 229..660 100 -> Plus
2R 23076020..23076674 661..1315 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:39 Download gff for BS07488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18962778..18962989 17..228 100 -> Plus
arm_2R 18963054..18963485 229..660 100 -> Plus
arm_2R 18963543..18964197 661..1315 100   Plus

BS07488.pep Sequence

Translation from 16 to 1314

> BS07488.pep
MAFRSVVTMEKPLQHISLTDWYARVNQMRNVADARRSDAFAIRHSSRSLR
NETRIEGDWANYETNEALTDRISELNRWRDIISKSFEKIEREIFMLQEEK
NATERELEALAGPISVIAECLTIRDGRLGSEITYDEADTEIKNELVVLEN
NQRLLADRCQKAWEKLNRLEEVRFKIGLEIEFKVEAVQLDNSQLALDRNS
ANISYKPDPTRNPKNSCSYESWLENVKNIKLLAENELADTYAIREALFVC
REKARNMLQSQQERAEHTIRKRIFETQRARNELEWQQLKMKEEMEKAMCE
IRTSENALRDKTDALKLAETRLENRAQRSGMELCMDQAHDMLCLEVEKLR
EIRRRLQVKIDESKTNFSLLEEHGKRIDVDLENKQHSLMTDIRALDLRMR
LRGGEFGSKVANASQTDRNITLTRMENEIPKD*

BS07488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3085-PB 432 CG3085-PB 1..432 1..432 2192 100 Plus
CG3085-PA 432 CG3085-PA 1..432 1..432 2192 100 Plus
CG32820-PB 520 CG32820-PB 139..501 22..391 282 23.9 Plus
CG32819-PB 520 CG32819-PB 139..501 22..391 282 23.9 Plus
CG17450-PC 520 CG17450-PC 139..501 22..391 282 23.9 Plus