Clone BS07490 Report

Search the DGRC for BS07490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG6432-RA
Protein status:BS07490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07490.3prime Sequence

936 bp (819 high quality bases) assembled on 2006-01-06

> BS07490.3prime
ATGGTCTAGAAAGCTTTCAGTCGAGTAACTTGGCCACAATCGGATCCGGT
GCGGTCATGGCATAGCCCAACTGGTTCAGAGCCCTCCGGATCTCGATGAA
CACGCTGGCATCATCGATAGTCGCCGGCAGGACAACGCGCTCATTGCGGG
CAAAGTCCGCCATCGCCTTGCGCATCGTCTTACCGGATCGAGTGCGTGGC
AGGTTGTTGACGGACGTGACCAGCCGGAAGGCGGCTATGGGGCCTACGAC
GTCGCGGATCAGCTTGATGATCTCCGTCGACAGCTTGGCATCGGTCTTCT
TGCAGTTCTCCACCGGAATGTACAGGCACAGTGGTACCTGTCCCTTGGTG
GCCTCGGGCACCCCGAAAACGGCCACGTCCACGACGTCCGGATGCCGAAG
CACGGCGTCTTCCAGGCTAGAGGTGGACAAGCGATGGCCAGCCACATTGA
TTACATCATCGTCGCGAGCTGTCACAAAGATATAGCCACGTTCGTCCTTG
TAGCCCGCATCCATTGTATCATAGTAACCCGGAAACTTTTGAAAGTAAAG
CGTGCGGAAGAGCTCTTCGTTTTTGTAAAGAGTGGCCATGTTTCCGGGTG
GCAGTGGTAGCTTAAGAGCAATCCTGCCCAGCTCCGAGGTCTGCGCCTCG
CTGCCGTCCGCTTTCAGGATCTTGACGTCGTAGCCCATGAGTGGCAAGCC
AGTGGAGTAAGTGGGCGGACTGAGGTTCTGCTGGAAGCCCAGGCATGTGG
CGGTGACCGCGGAACCAGTCTCCGTCTGCCACCAGTGGTTGAGCACGGGC
ACCTTGAAGGTCTTCTCGATCCAGGACTTGGTCTCGTAGTCGCAGTGCTC
GCCCGGCATGAAGATGGCACGCAGCGACTTCATGGAGTACTGTCGCCCAT
AGCTGATGTCCGGATCAGCACGACGGATAACACGGG

BS07490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-PA 2025 CG6432-RA 1189..2025 853..17 4185 100 Minus
CG6432-PA 2025 CG6432-RA 1107..1184 935..858 390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-RB 2715 CG6432-RB 1219..2137 935..17 4550 99.8 Minus
CG6432-RA 2267 CG6432-RA 1219..2137 935..17 4550 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24339554..24340067 530..17 2570 100 Minus
3R 32079331 3R 24338972..24339231 935..676 1255 98.8 Minus
3R 32079331 3R 24339295..24339442 676..529 740 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:36:55 has no hits.

BS07490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:22 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-PA 1106..2025 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:02 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-PA 1106..2025 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:49 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 1218..2143 11..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:29 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 1218..2143 11..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:29 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24339296..24339441 530..675 100 -> Minus
3R 24338971..24339231 676..936 98 -> Minus
3R 24339555..24340073 11..529 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:49 Download gff for BS07490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20164693..20164953 676..936 98 -> Minus
arm_3R 20165018..20165163 530..675 100 -> Minus
arm_3R 20165277..20165795 11..529 99   Minus

BS07490.5prime Sequence

960 bp (761 high quality bases) assembled on 2006-01-06

> BS07490.5prime
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGGTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGCCT
CAGATATGGG

BS07490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-PA 2025 CG6432-RA 1..944 17..960 4695 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-RB 2715 CG6432-RB 113..1056 17..960 4705 99.9 Plus
CG6432-RA 2267 CG6432-RA 113..1056 17..960 4705 99.9 Plus
Dis3-RA 3588 CG6413-RA 3374..3412 17..55 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24337847..24338753 54..960 4520 99.9 Plus
3R 32079331 3R 24337034..24337072 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:48:22 has no hits.

BS07490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:24 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-PA 1..944 17..960 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:03 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-PA 1..944 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:44:33 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 106..1056 10..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:07 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 106..1056 10..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:07 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24337027..24337070 10..53 93 -> Plus
3R 24337847..24338753 54..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:44:33 Download gff for BS07490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20162749..20162792 10..53 93 -> Plus
arm_3R 20163569..20164475 54..960 99   Plus

BS07490.complete Sequence

2057 bp assembled on 2008-01-02

GenBank Submission: FJ638802

> BS07490.complete
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGTTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGCCT
CAGATATGGGCTGGGTGGTGGGTCACTCGTACATCTGCTACGGTCCACTC
TGCCTCGGAGCCACCAGTGTTATGTACGAGGGTAAACCGGACCGTACTCC
TGACCCGGGTCAGTACTTTAGGATCATCGACCAATACCAGGTGCGCTCGA
TCTTCTCGGTACCTACCTCCTTCCGTGTTATCCGTCGTGCTGATCCGGAC
ATCAGCTATGGGCGACAGTACTCCATGAAGTCGCTGCGTGCCATCTTCAT
TGCCGGCGAGCACTGCGACTACGAGACCAAGTCCTGGATCGAGAAGACCT
TCAAGGTGCCCGTGCTCAACCACTGGTGGCAGACGGAGACTGGTTCCGCG
GTCACCGCCACATGCCTGGGCTTCCAGCAGAACCTCAGTCCGCCCACTTA
CTCCACTGGCTTGCCACTCATGGGCTACGACGTCAAGATCCTGAAAGCGG
ACGGCAGCGAGGCGCAGACCTCGGAGCTGGGCAGGATTGCTCTTAAGCTA
CCACTGCCACCCGGAAACATGGCCACTCTTTACAAAAACGAAGAGCTCTT
CCGCACGCTTTACTTTCAAAAGTTTCCGGGTTACTATGATACAATGGATG
CGGGCTACAAGGACGAACGTGGCTATATCTTTGTGACAGCTCGCGACGAT
GATGTAATCAATGTGGCTGGCCATCGCTTGTCCACCTCTAGCCTGGAAGA
CGCCGTGCTTCGGCATCCGGACGTCGTGGACGTGGCCGTTTTCGGGGTGC
CCGAGGCCACCAAGGGACAGGTACCACTGTGCCTGTACATTCCGGTGGAG
AACTGCAAGAAGACCGATGCCAAGCTGTCGACGGAGATCATCAAGCTGAT
CCGCGACGTCGTAGGCCCCATAGCCGCCTTCCGGCTGGTCACGTCCGTCA
ACAACCTGCCACGCACTCGATCCGGTAAGACGATGCGCAAGGCGATGGCG
GACTTTGCCCGCAATGAGCGCGTTGTCCTGCCGGCGACTATCGATGATGC
CAGCGTGTTCATCGAGATCCGGAGGGCTCTGAACCAGTTGGGCTATGCCA
TGACCGCACCGGATCCGATTGTGGCCAAGTTACTCGACTGAAAGCTTTCT
AGACCAT

BS07490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-RB 2025 CG6432-PB 1..2025 17..2041 10125 100 Plus
CG6432-RA 2025 CG6432-PA 1..2025 17..2041 10125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-RB 2715 CG6432-RB 113..2137 17..2041 10125 100 Plus
CG6432-RA 2267 CG6432-RA 113..2137 17..2041 10125 100 Plus
Dis3-RA 3588 CG6413-RA 3374..3412 17..55 195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24337847..24338865 54..1072 5095 100 Plus
3R 32079331 3R 24339554..24340067 1528..2041 2570 100 Plus
3R 32079331 3R 24338919..24339231 1070..1382 1565 100 Plus
3R 32079331 3R 24339295..24339442 1382..1529 740 100 Plus
3R 32079331 3R 24337034..24337072 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:02:57 has no hits.

BS07490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:40 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 1..2025 17..2041 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:03 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 113..2136 17..2040 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:24 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 113..2136 17..2040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:40 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 106..2143 10..2047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:55 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
CG6432-RA 113..2136 17..2040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:55 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24337034..24337070 17..53 100 -> Plus
3R 24337847..24338864 54..1071 100 -> Plus
3R 24338921..24339231 1072..1382 100 -> Plus
3R 24339296..24339441 1383..1528 100 -> Plus
3R 24339555..24340066 1529..2040 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:24 Download gff for BS07490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20162756..20162792 17..53 100 -> Plus
arm_3R 20163569..20164586 54..1071 100 -> Plus
arm_3R 20164643..20164953 1072..1382 100 -> Plus
arm_3R 20165018..20165163 1383..1528 100 -> Plus
arm_3R 20165277..20165788 1529..2040 100   Plus

BS07490.pep Sequence

Translation from 16 to 2040

> BS07490.pep
MEPGPSAVNYEGSESVCGMPVEAHDPLYLKAYRQSVQNPAAFWEEQGNLL
DWDRPWEKVLDNSNPPFTKWYVGGYLNACYNSIDRHILAGRGSNVALIHD
SPLTGTLRRVTYQELYDQIVLLAGGLAKLGVVKGDRVVIYMPLIPETIIA
MLAIVRLGAIHSVVFGGFAARELCSRIEHVEPKLVIASNVGVEPGKVVPY
LDILHSAISMSRWRPPQRNIIFRRDNVSPDTTKLDPLTDVLWSDILKMAE
GERPIACVPIEANDPLYILYTSGTTDKPKGVLRTIGGHLVALVYTLRTLY
GINPGHTWWAASDMGWVVGHSYICYGPLCLGATSVMYEGKPDRTPDPGQY
FRIIDQYQVRSIFSVPTSFRVIRRADPDISYGRQYSMKSLRAIFIAGEHC
DYETKSWIEKTFKVPVLNHWWQTETGSAVTATCLGFQQNLSPPTYSTGLP
LMGYDVKILKADGSEAQTSELGRIALKLPLPPGNMATLYKNEELFRTLYF
QKFPGYYDTMDAGYKDERGYIFVTARDDDVINVAGHRLSTSSLEDAVLRH
PDVVDVAVFGVPEATKGQVPLCLYIPVENCKKTDAKLSTEIIKLIRDVVG
PIAAFRLVTSVNNLPRTRSGKTMRKAMADFARNERVVLPATIDDASVFIE
IRRALNQLGYAMTAPDPIVAKLLD*

BS07490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6432-PB 674 CG6432-PB 1..674 1..674 3555 100 Plus
CG6432-PA 674 CG6432-PA 1..674 1..674 3555 100 Plus
AcCoAS-PD 670 CG9390-PD 26..646 28..637 899 34.4 Plus
AcCoAS-PA 670 CG9390-PA 26..646 28..637 899 34.4 Plus
AcCoAS-PB 524 CG9390-PB 1..500 141..637 734 34.7 Plus