Clone Sequence Records
BS07490.3prime Sequence
936 bp (819 high quality bases) assembled on 2006-01-06
> BS07490.3prime
ATGGTCTAGAAAGCTTTCAGTCGAGTAACTTGGCCACAATCGGATCCGGT
GCGGTCATGGCATAGCCCAACTGGTTCAGAGCCCTCCGGATCTCGATGAA
CACGCTGGCATCATCGATAGTCGCCGGCAGGACAACGCGCTCATTGCGGG
CAAAGTCCGCCATCGCCTTGCGCATCGTCTTACCGGATCGAGTGCGTGGC
AGGTTGTTGACGGACGTGACCAGCCGGAAGGCGGCTATGGGGCCTACGAC
GTCGCGGATCAGCTTGATGATCTCCGTCGACAGCTTGGCATCGGTCTTCT
TGCAGTTCTCCACCGGAATGTACAGGCACAGTGGTACCTGTCCCTTGGTG
GCCTCGGGCACCCCGAAAACGGCCACGTCCACGACGTCCGGATGCCGAAG
CACGGCGTCTTCCAGGCTAGAGGTGGACAAGCGATGGCCAGCCACATTGA
TTACATCATCGTCGCGAGCTGTCACAAAGATATAGCCACGTTCGTCCTTG
TAGCCCGCATCCATTGTATCATAGTAACCCGGAAACTTTTGAAAGTAAAG
CGTGCGGAAGAGCTCTTCGTTTTTGTAAAGAGTGGCCATGTTTCCGGGTG
GCAGTGGTAGCTTAAGAGCAATCCTGCCCAGCTCCGAGGTCTGCGCCTCG
CTGCCGTCCGCTTTCAGGATCTTGACGTCGTAGCCCATGAGTGGCAAGCC
AGTGGAGTAAGTGGGCGGACTGAGGTTCTGCTGGAAGCCCAGGCATGTGG
CGGTGACCGCGGAACCAGTCTCCGTCTGCCACCAGTGGTTGAGCACGGGC
ACCTTGAAGGTCTTCTCGATCCAGGACTTGGTCTCGTAGTCGCAGTGCTC
GCCCGGCATGAAGATGGCACGCAGCGACTTCATGGAGTACTGTCGCCCAT
AGCTGATGTCCGGATCAGCACGACGGATAACACGGG
BS07490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-PA | 2025 | CG6432-RA | 1189..2025 | 853..17 | 4185 | 100 | Minus |
CG6432-PA | 2025 | CG6432-RA | 1107..1184 | 935..858 | 390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-RB | 2715 | CG6432-RB | 1219..2137 | 935..17 | 4550 | 99.8 | Minus |
CG6432-RA | 2267 | CG6432-RA | 1219..2137 | 935..17 | 4550 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24339554..24340067 | 530..17 | 2570 | 100 | Minus |
3R | 32079331 | 3R | 24338972..24339231 | 935..676 | 1255 | 98.8 | Minus |
3R | 32079331 | 3R | 24339295..24339442 | 676..529 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:36:55 has no hits.
BS07490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:22 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-PA | 1106..2025 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:02 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-PA | 1106..2025 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:49 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 1218..2143 | 11..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:29 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 1218..2143 | 11..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:29 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24339296..24339441 | 530..675 | 100 | -> | Minus |
3R | 24338971..24339231 | 676..936 | 98 | -> | Minus |
3R | 24339555..24340073 | 11..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:49 Download gff for
BS07490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20164693..20164953 | 676..936 | 98 | -> | Minus |
arm_3R | 20165018..20165163 | 530..675 | 100 | -> | Minus |
arm_3R | 20165277..20165795 | 11..529 | 99 | | Minus |
BS07490.5prime Sequence
960 bp (761 high quality bases) assembled on 2006-01-06
> BS07490.5prime
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGGTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGCCT
CAGATATGGG
BS07490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-PA | 2025 | CG6432-RA | 1..944 | 17..960 | 4695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-RB | 2715 | CG6432-RB | 113..1056 | 17..960 | 4705 | 99.9 | Plus |
CG6432-RA | 2267 | CG6432-RA | 113..1056 | 17..960 | 4705 | 99.9 | Plus |
Dis3-RA | 3588 | CG6413-RA | 3374..3412 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24337847..24338753 | 54..960 | 4520 | 99.9 | Plus |
3R | 32079331 | 3R | 24337034..24337072 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:48:22 has no hits.
BS07490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:24 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:03 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:44:33 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 106..1056 | 10..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:07 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 106..1056 | 10..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:07 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24337027..24337070 | 10..53 | 93 | -> | Plus |
3R | 24337847..24338753 | 54..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:44:33 Download gff for
BS07490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20162749..20162792 | 10..53 | 93 | -> | Plus |
arm_3R | 20163569..20164475 | 54..960 | 99 | | Plus |
BS07490.complete Sequence
2057 bp assembled on 2008-01-02
GenBank Submission: FJ638802
> BS07490.complete
GAAGTTATCAGTCGACATGGAACCCGGTCCTAGTGCAGTGAACTACGAAG
GCAGTGAATCTGTATGCGGCATGCCGGTGGAGGCTCACGATCCTCTCTAC
TTGAAGGCCTATCGCCAGAGTGTTCAGAATCCGGCTGCATTTTGGGAGGA
GCAGGGTAACCTGCTCGACTGGGATCGGCCATGGGAGAAGGTACTGGACA
ACAGTAATCCGCCATTCACCAAGTGGTATGTGGGTGGCTACCTGAATGCC
TGCTACAATTCCATTGATCGCCACATACTGGCCGGCCGCGGCTCCAATGT
GGCCCTAATCCATGACAGCCCCTTGACTGGCACACTGCGTCGGGTTACCT
ATCAGGAGCTGTATGACCAGATCGTTCTGCTGGCAGGCGGCCTGGCCAAA
TTGGGCGTGGTCAAAGGTGATCGCGTCGTGATCTACATGCCCCTCATCCC
GGAGACCATCATTGCCATGCTGGCAATTGTGCGTCTGGGTGCGATTCACT
CCGTGGTCTTCGGTGGCTTCGCTGCCCGCGAACTCTGCTCGCGCATCGAA
CATGTGGAACCAAAACTGGTGATCGCCTCCAATGTGGGCGTGGAGCCGGG
CAAAGTGGTGCCCTACCTGGACATCCTTCATTCAGCTATTAGCATGTCGC
GATGGCGACCACCGCAGCGTAACATAATCTTTCGGCGTGATAATGTTTCG
CCAGATACCACCAAACTGGATCCTCTGACGGATGTGCTCTGGTCGGATAT
TCTTAAGATGGCGGAGGGCGAGCGGCCCATAGCCTGTGTTCCCATCGAGG
CCAACGATCCTTTGTATATCCTCTATACCTCTGGAACGACGGATAAGCCC
AAGGGAGTACTTCGCACCATCGGAGGTCACTTGGTTGCTCTGGTGTACAC
GCTGAGAACTCTCTATGGCATCAATCCTGGCCACACCTGGTGGGCGGCCT
CAGATATGGGCTGGGTGGTGGGTCACTCGTACATCTGCTACGGTCCACTC
TGCCTCGGAGCCACCAGTGTTATGTACGAGGGTAAACCGGACCGTACTCC
TGACCCGGGTCAGTACTTTAGGATCATCGACCAATACCAGGTGCGCTCGA
TCTTCTCGGTACCTACCTCCTTCCGTGTTATCCGTCGTGCTGATCCGGAC
ATCAGCTATGGGCGACAGTACTCCATGAAGTCGCTGCGTGCCATCTTCAT
TGCCGGCGAGCACTGCGACTACGAGACCAAGTCCTGGATCGAGAAGACCT
TCAAGGTGCCCGTGCTCAACCACTGGTGGCAGACGGAGACTGGTTCCGCG
GTCACCGCCACATGCCTGGGCTTCCAGCAGAACCTCAGTCCGCCCACTTA
CTCCACTGGCTTGCCACTCATGGGCTACGACGTCAAGATCCTGAAAGCGG
ACGGCAGCGAGGCGCAGACCTCGGAGCTGGGCAGGATTGCTCTTAAGCTA
CCACTGCCACCCGGAAACATGGCCACTCTTTACAAAAACGAAGAGCTCTT
CCGCACGCTTTACTTTCAAAAGTTTCCGGGTTACTATGATACAATGGATG
CGGGCTACAAGGACGAACGTGGCTATATCTTTGTGACAGCTCGCGACGAT
GATGTAATCAATGTGGCTGGCCATCGCTTGTCCACCTCTAGCCTGGAAGA
CGCCGTGCTTCGGCATCCGGACGTCGTGGACGTGGCCGTTTTCGGGGTGC
CCGAGGCCACCAAGGGACAGGTACCACTGTGCCTGTACATTCCGGTGGAG
AACTGCAAGAAGACCGATGCCAAGCTGTCGACGGAGATCATCAAGCTGAT
CCGCGACGTCGTAGGCCCCATAGCCGCCTTCCGGCTGGTCACGTCCGTCA
ACAACCTGCCACGCACTCGATCCGGTAAGACGATGCGCAAGGCGATGGCG
GACTTTGCCCGCAATGAGCGCGTTGTCCTGCCGGCGACTATCGATGATGC
CAGCGTGTTCATCGAGATCCGGAGGGCTCTGAACCAGTTGGGCTATGCCA
TGACCGCACCGGATCCGATTGTGGCCAAGTTACTCGACTGAAAGCTTTCT
AGACCAT
BS07490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-RB | 2025 | CG6432-PB | 1..2025 | 17..2041 | 10125 | 100 | Plus |
CG6432-RA | 2025 | CG6432-PA | 1..2025 | 17..2041 | 10125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-RB | 2715 | CG6432-RB | 113..2137 | 17..2041 | 10125 | 100 | Plus |
CG6432-RA | 2267 | CG6432-RA | 113..2137 | 17..2041 | 10125 | 100 | Plus |
Dis3-RA | 3588 | CG6413-RA | 3374..3412 | 17..55 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24337847..24338865 | 54..1072 | 5095 | 100 | Plus |
3R | 32079331 | 3R | 24339554..24340067 | 1528..2041 | 2570 | 100 | Plus |
3R | 32079331 | 3R | 24338919..24339231 | 1070..1382 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 24339295..24339442 | 1382..1529 | 740 | 100 | Plus |
3R | 32079331 | 3R | 24337034..24337072 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:02:57 has no hits.
BS07490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:40 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 1..2025 | 17..2041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:03 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 113..2136 | 17..2040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:24 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 113..2136 | 17..2040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:40 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 106..2143 | 10..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:55 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6432-RA | 113..2136 | 17..2040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:55 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24337034..24337070 | 17..53 | 100 | -> | Plus |
3R | 24337847..24338864 | 54..1071 | 100 | -> | Plus |
3R | 24338921..24339231 | 1072..1382 | 100 | -> | Plus |
3R | 24339296..24339441 | 1383..1528 | 100 | -> | Plus |
3R | 24339555..24340066 | 1529..2040 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:24 Download gff for
BS07490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20162756..20162792 | 17..53 | 100 | -> | Plus |
arm_3R | 20163569..20164586 | 54..1071 | 100 | -> | Plus |
arm_3R | 20164643..20164953 | 1072..1382 | 100 | -> | Plus |
arm_3R | 20165018..20165163 | 1383..1528 | 100 | -> | Plus |
arm_3R | 20165277..20165788 | 1529..2040 | 100 | | Plus |
BS07490.pep Sequence
Translation from 16 to 2040
> BS07490.pep
MEPGPSAVNYEGSESVCGMPVEAHDPLYLKAYRQSVQNPAAFWEEQGNLL
DWDRPWEKVLDNSNPPFTKWYVGGYLNACYNSIDRHILAGRGSNVALIHD
SPLTGTLRRVTYQELYDQIVLLAGGLAKLGVVKGDRVVIYMPLIPETIIA
MLAIVRLGAIHSVVFGGFAARELCSRIEHVEPKLVIASNVGVEPGKVVPY
LDILHSAISMSRWRPPQRNIIFRRDNVSPDTTKLDPLTDVLWSDILKMAE
GERPIACVPIEANDPLYILYTSGTTDKPKGVLRTIGGHLVALVYTLRTLY
GINPGHTWWAASDMGWVVGHSYICYGPLCLGATSVMYEGKPDRTPDPGQY
FRIIDQYQVRSIFSVPTSFRVIRRADPDISYGRQYSMKSLRAIFIAGEHC
DYETKSWIEKTFKVPVLNHWWQTETGSAVTATCLGFQQNLSPPTYSTGLP
LMGYDVKILKADGSEAQTSELGRIALKLPLPPGNMATLYKNEELFRTLYF
QKFPGYYDTMDAGYKDERGYIFVTARDDDVINVAGHRLSTSSLEDAVLRH
PDVVDVAVFGVPEATKGQVPLCLYIPVENCKKTDAKLSTEIIKLIRDVVG
PIAAFRLVTSVNNLPRTRSGKTMRKAMADFARNERVVLPATIDDASVFIE
IRRALNQLGYAMTAPDPIVAKLLD*
BS07490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6432-PB | 674 | CG6432-PB | 1..674 | 1..674 | 3555 | 100 | Plus |
CG6432-PA | 674 | CG6432-PA | 1..674 | 1..674 | 3555 | 100 | Plus |
AcCoAS-PD | 670 | CG9390-PD | 26..646 | 28..637 | 899 | 34.4 | Plus |
AcCoAS-PA | 670 | CG9390-PA | 26..646 | 28..637 | 899 | 34.4 | Plus |
AcCoAS-PB | 524 | CG9390-PB | 1..500 | 141..637 | 734 | 34.7 | Plus |