Clone BS07492 Report

Search the DGRC for BS07492

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG15279-RA
Protein status:BS07492.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07492.3prime Sequence

865 bp (830 high quality bases) assembled on 2006-01-06

> BS07492.3prime
ATGGTCTAGAAAGCTTTCAACCAAAGATGTTTTGCTTGATGGCAGCCCAA
ATTCCCTGACCACGTTTCGGGGTCAACTCATTCTCGATTTCCTTGTGATA
CTGTTCCCGGAGCAGAGGGTCACTGGGTCCCCAATTCTTTTTCGGCGTAA
AGGCTCCACGGATTTTTGCACCCAAAGTCTGACCTGGATCTCGAACAATG
GCCACGATCATCCAAATGGGCAGCTGAAGAATACCGAAGGCCGTTATTAG
CCAACCAATTGAGTAAGACCAATTTGGATAGACGATATTGTTGTATGTTA
GAGGTTGGTAGGTCGCATAGAAATAGATCAGAATAACAGTCATGATCAGC
GGGGTAATGATGCTCCAGCAGAGCCTCCAGTACAGGCCCACTTTGCGACC
CAGCATGAACTCAATGTCCTTGCACAGGCGATCTGTGCCATAAATCCATC
CAATGGTGTACAGCTCGGCGATTCCCAGTACCAAAGCAATCATTGAGGCG
CCGAAAAAGTCCACAAGAGTCAGCATATACTGACCGCCCGGTGTTATATA
CATTAATCCAATAAAGAAACTGACTACAGCGATGAGCAGCGAGCACTGCC
ACTGCCCAAAGTTGGGAAACCGATCCCGAATGGCGGTCACCGAGCAGGAG
GTCATGGCTATATTCGATCCTATGCCCAACACGAAGAGCATGAGGAAGAA
CAGCACTGAGAAGATTTGTGGCAGATTCTTGAACTTGGCAATGGCATCGG
GATATGAGATGAAGGCCAATCCGGCACCGCCCTTCACAACTGAGCCGATG
TCATCGGTTCCGATTTCGTGGGCCAGATGGCCGAGGATACCGAATATCGT
GAATCCAGCTAGCAG

BS07492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PB 1920 CG15279-RB 1072..1920 865..17 4245 100 Minus
CG15279-PA 1920 CG15279-RA 1072..1920 865..17 4245 100 Minus
CG15279-PC 2220 CG15279-RC 1372..2220 865..17 4245 100 Minus
CG15088-PB 1590 CG15088-RB 982..1038 787..731 160 91.2 Minus
CG15088-PA 1686 CG15088-RA 982..1038 787..731 160 91.2 Minus
CG4476-PB 1890 CG4476-RB 1123..1166 772..729 145 93.1 Minus
CG1698-PA 1965 CG1698-RA 1261..1292 712..681 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RD 2513 CG15279-RD 1541..2389 865..17 4245 100 Minus
CG15279-RA 2110 CG15279-RA 1138..1986 865..17 4245 100 Minus
CG15279-RB 2531 CG15279-RB 1559..2407 865..17 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14845752..14846079 538..865 1640 100 Plus
2L 23513712 2L 14845417..14845694 262..539 1390 100 Plus
2L 23513712 2L 14845117..14845361 17..261 1225 100 Plus
2R 25286936 2R 9797149..9797273 768..644 235 79.2 Minus
2R 25286936 2R 18728844..18728914 717..787 235 88.7 Plus
3L 28110227 3L 9214129..9214227 772..674 225 81.8 Minus
2R 25286936 2R 12299631..12299734 660..763 220 80.8 Plus
Blast to na_te.dros performed on 2015-02-11 09:58:40 has no hits.

BS07492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:27 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PC 1372..2220 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:07 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PB 1072..1920 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:14 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 1559..2407 17..865 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:43 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 1559..2407 17..865 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:43 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14845117..14845361 17..261 100 <- Plus
2L 14845417..14845693 262..538 100 <- Plus
2L 14845753..14846079 539..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:14 Download gff for BS07492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14845117..14845361 17..261 100 <- Plus
arm_2L 14845417..14845693 262..538 100 <- Plus
arm_2L 14845753..14846079 539..865 100   Plus

BS07492.5prime Sequence

911 bp (820 high quality bases) assembled on 2006-01-06

> BS07492.5prime
GAAGTTATCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAG
CCTTCGTGGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCG
ACCAACAGTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAA
AGTGCCAGAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGT
CCTGCATCGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTT
ACTGCCCTCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGT
CCTGTTCCTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCC
AGTTTTCCAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATG
AAAGGTGTTGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTA
CTATGCCGCCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTC
GCAACCCATTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGC
ATTAACTCAGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGA
TCAGCGCCCGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCA
CCAGTTCGGAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAAT
ATCGAGGAAGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTT
TATCGCCTGGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTT
CGGGAAAGGCATCCTACTTCCTGGCCCTTTTCCCGTACGTCATCATGGGT
GTTCTTCTGGTGCGAGCTGTAACTCTGCCGGGATCAATAGACGGTATATA
CTACTTTTATA

BS07492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PB 1920 CG15279-RB 1..891 17..907 4455 100 Plus
CG15279-PA 1920 CG15279-RA 1..891 17..907 4455 100 Plus
CG15279-PC 2220 CG15279-RC 729..1191 445..907 2315 100 Plus
CG15279-PC 2220 CG15279-RC 1..388 17..404 1940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 2110 CG15279-RA 67..957 17..907 4455 100 Plus
CG15279-RB 2531 CG15279-RB 488..1378 17..907 4455 100 Plus
CG15279-RD 2513 CG15279-RD 488..893 17..422 1970 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14848672..14848978 406..100 1535 100 Minus
2L 23513712 2L 14846790..14847060 672..402 1355 100 Minus
2L 23513712 2L 14846260..14846494 907..673 1175 100 Minus
2L 23513712 2L 14849039..14849122 100..17 420 100 Minus
2R 25286936 2R 12300722..12300885 336..173 325 79.9 Minus
3L 28110227 3L 9212982..9213163 186..367 310 78 Plus
2R 25286936 2R 9795678..9795857 188..367 240 75.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:25:16 has no hits.

BS07492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:28 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PA 1..893 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:09 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PA 1..893 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:51 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1380 17..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:11 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1380 17..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:11 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14848674..14848977 101..404 100 <- Minus
2L 14849039..14849122 17..100 100   Minus
2L 14846258..14846494 673..910 99 <- Minus
2L 14846790..14847057 405..672 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:51 Download gff for BS07492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14846258..14846494 673..910 99 <- Minus
arm_2L 14846790..14847057 405..672 100 <- Minus
arm_2L 14848674..14848977 101..404 100 <- Minus
arm_2L 14849039..14849122 17..100 100   Minus

BS07492.complete Sequence

1952 bp assembled on 2008-01-03

GenBank Submission: FJ635887

> BS07492.complete
GAAGTTATCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAG
CCTTCGTGGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCG
ACCAACAGTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAA
AGTGCCAGAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGT
CCTGCATCGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTT
ACTGCCCTCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGT
CCTGTTCCTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCC
AGTTTTCCAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATG
AAAGGTGTTGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTA
CTATGCCGCCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTC
GCAACCCATTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGC
ATTAACTCAGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGA
TCAGCGCCCGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCA
CCAGTTCGGAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAAT
ATCGAGGAAGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTT
TATCGCCTGGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTT
CGGGAAAGGCATCCTACTTCCTGGCCCTTTTCCCGTACGTCATCATGGGT
GTTCTTCTGGTGCGAGCTGTAACTCTGCCGGGATCAATAGACGGTATATA
CTACTTTATAAAGCCGCAATGGGGAAAGATTTTGGACCCGAAGGTTTGGT
ACGCGGCTGTAACTCAGTGTTTCTACTCCTTGTCCGTTTGTTTCGGCAAC
ATCATCATGTACTCCTCGTTCAACAAGTTCGGGCACAATGTACACAGGGA
TGCAGCAATTGTAACGGGTCTGGACACTATGACCTCTCTGCTAGCTGGAT
TCACGATATTCGGTATCCTCGGCCATCTGGCCCACGAAATCGGAACCGAT
GACATCGGCTCAGTTGTGAAGGGCGGTGCCGGATTGGCCTTCATCTCATA
TCCCGATGCCATTGCCAAGTTCAAGAATCTGCCACAAATCTTCTCAGTGC
TGTTCTTCCTCATGCTCTTCGTGTTGGGCATAGGATCGAATATAGCCATG
ACCTCCTGCTCGGTGACCGCCATTCGGGATCGGTTTCCCAACTTTGGGCA
GTGGCAGTGCTCGCTGCTCATCGCTGTAGTCAGTTTCTTTATTGGATTAA
TGTATATAACACCGGGCGGTCAGTATATGCTGACTCTTGTGGACTTTTTC
GGCGCCTCAATGATTGCTTTGGTACTGGGAATCGCCGAGCTGTACACCAT
TGGATGGATTTATGGCACAGATCGCCTGTGCAAGGACATTGAGTTCATGC
TGGGTCGCAAAGTGGGCCTGTACTGGAGGCTCTGCTGGAGCATCATTACC
CCGCTGATCATGACTGTTATTCTGATCTATTTCTATGCGACCTACCAACC
TCTAACATACAACAATATCGTCTATCCAAATTGGTCTTACTCAATTGGTT
GGCTAATAACGGCCTTCGGTATTCTTCAGCTGCCCATTTGGATGATCGTG
GCCATTGTTCGAGATCCAGGTCAGACTTTGGGTGCAAAAATCCGTGGAGC
CTTTACGCCGAAAAAGAATTGGGGACCCAGTGACCCTCTGCTCCGGGAAC
AGTATCACAAGGAAATCGAGAATGAGTTGACCCCGAAACGTGGTCAGGGA
ATTTGGGCTGCCATCAAGCAAAACATCTTTGGTTGAAAGCTTTCTAGACC
AT

BS07492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 1920 CG15279-PA 1..1920 17..1936 9600 100 Plus
CG15279-RB 1920 CG15279-PB 1..1920 17..1936 9600 100 Plus
CG15279-RD 1902 CG15279-PD 623..1902 657..1936 6340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 2110 CG15279-RA 67..1986 17..1936 9600 100 Plus
CG15279-RB 2531 CG15279-RB 488..2407 17..1936 9600 100 Plus
CG15279-RD 2513 CG15279-RD 1110..2389 657..1936 6340 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14845752..14846494 1415..673 3715 100 Minus
2L 23513712 2L 14848672..14848978 406..100 1535 100 Minus
2L 23513712 2L 14845417..14845694 1691..1414 1390 100 Minus
2L 23513712 2L 14846790..14847060 672..402 1355 100 Minus
2L 23513712 2L 14845117..14845361 1936..1692 1225 100 Minus
2L 23513712 2L 14849039..14849122 100..17 420 100 Minus
3L 28110227 3L 9213732..9214227 784..1279 380 71.8 Plus
2R 25286936 2R 12300722..12300885 336..173 325 79.9 Minus
3L 28110227 3L 9212982..9213163 186..367 310 78 Plus
X 23542271 X 5407749..5407901 312..160 255 77.8 Minus
2R 25286936 2R 9795678..9795857 188..367 240 75.6 Plus
2R 25286936 2R 9797149..9797273 1185..1309 235 79.2 Plus
2R 25286936 2R 18728844..18728914 1236..1166 235 88.7 Minus
2R 25286936 2R 12299631..12299734 1293..1190 220 80.8 Minus
X 23542271 X 5406453..5406559 1287..1181 220 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:19:31 has no hits.

BS07492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:41 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 1..1920 17..1936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:13 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 39..1957 17..1935 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:55 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..2406 17..1935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:41 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RA 39..1958 17..1936 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:42 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..2406 17..1935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:42 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14848674..14848977 101..404 100 <- Minus
2L 14849039..14849122 17..100 100   Minus
2L 14845118..14845361 1692..1935 100 <- Minus
2L 14845417..14845693 1415..1691 100 <- Minus
2L 14845753..14846494 673..1414 100 <- Minus
2L 14846790..14847057 405..672 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:55 Download gff for BS07492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14845417..14845693 1415..1691 100 <- Minus
arm_2L 14845118..14845361 1692..1935 100 <- Minus
arm_2L 14845753..14846494 673..1414 100 <- Minus
arm_2L 14846790..14847057 405..672 100 <- Minus
arm_2L 14848674..14848977 101..404 100 <- Minus
arm_2L 14849039..14849122 17..100 100   Minus

BS07492.pep Sequence

Translation from 16 to 1935

> BS07492.pep
MDTTQRNHQNLAFVGDDGRSTASTVEISTNSPALRDNSDDQEAAKVPEER
ATWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIVLFLIG
KPIYYLEMVIGQFSSRGSVKVFDLCPAMKGVGAGQAFQVFMLSTYYAALV
AIIGRYFIESFRNPLPWSTCRAEWGIHCINSAPDASNWSQLESNDQRPQN
YTMKSQNDRVITSSEWYFVKEVLHEKPNIEEGIGLPNWELVIGLFIAWSC
VFFIIRRGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKP
QWGKILDPKVWYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAIVT
GLDTMTSLLAGFTIFGILGHLAHEIGTDDIGSVVKGGAGLAFISYPDAIA
KFKNLPQIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQWQCSL
LIAVVSFFIGLMYITPGGQYMLTLVDFFGASMIALVLGIAELYTIGWIYG
TDRLCKDIEFMLGRKVGLYWRLCWSIITPLIMTVILIYFYATYQPLTYNN
IVYPNWSYSIGWLITAFGILQLPIWMIVAIVRDPGQTLGAKIRGAFTPKK
NWGPSDPLLREQYHKEIENELTPKRGQGIWAAIKQNIFG*

BS07492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PA 639 CG15279-PA 1..639 1..639 3390 100 Plus
CG15279-PB 639 CG15279-PB 1..639 1..639 3390 100 Plus
CG15279-PD 633 CG15279-PD 1..633 1..639 3065 91.3 Plus
CG1698-PB 654 CG1698-PB 41..654 17..639 1854 56 Plus
CG1698-PA 654 CG1698-PA 41..654 17..639 1854 56 Plus