Clone Sequence Records
BS07494.3prime Sequence
975 bp (792 high quality bases) assembled on 2006-01-06
> BS07494.3prime
ATGGTCTAGAAAGCTTTCATAAGAATGGATTGTTGGTGTTCATGGCGCCG
CTGGCTGCAAAGGGATTGTTGGCCATCACAGGAGCGGGTTGCATGCTGCC
GAAGCCGCAGCCGTTGGGCAGACCCTGCGAGATGGCGAACCCGTTGTTGT
TGAAGTTGAAGAAGCTCTGCTGTTGCTGCTGCTGCTGCTGGAGGAGATGG
TGCCCCATCTGCTGCTGGGAACTGCTGCCGTAGGCATTTGGTATGAGCGT
CAACTGGCCATAGAGATTCTGCTGGTGCTGCTGCTGTTGCTGCTGCTGGA
ATGGATTCACCACATGGCTGCTGAGCTGCTGCTGTTGCTGGCCCTTGAAG
GGATTTGGATTGTTGTTGAGGGCTCCACCAAAGGCATCTGTGGCCTGAAC
ATTGCCACTGGTGGGCGTGGGCGTCTCTGTGGCGCTTTCGCTGGCCTTCA
GTTCTCGCAGCTGCTCGTCGAGATCCTTAAGAGCGGCATATCGATCCTCA
CTGGGCGCCATCGCTGCATTTCCGCCCTTGGGCGGACTGGTCGTATGGCC
GTTCTGCAAGGGAGCACCCACTGCATTGTAGATGGGAGCGTGATCGAAGT
CGGCAAAGTTCTCAGTGCCCTGATGACCATTGCCATTGAGGAGCTGCTGC
TGATGCAGCTGCTGCTGCAACTGCTGTTGCTGCTGGAGATGAGCTGCCCG
GATGGGCTGCACCTTGGCGTAGCCATTGCTGGAACCCACTGAGGACACGG
ACGACACCGCCGGCGATCCTGTGGAACGCGCCGATGTGGCGTCGAAAATG
TTGGCCGAGCCAAAGTCAGCCACAAAGTCGCAGTCCGCACCGAAGCCATT
GCTAGCACAACTGCTGGTGTCGGAAAGAGCTCCAGTGGGATGTGAACCGG
CGCTGTTCAGGCTGCTCAATCCGCCACCCAGGCCAAAGGCATCGTGATTG
TTGTTTTGGCTGTTGTTCTGGTGAT
BS07494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3365-PC | 1344 | drongo-RC | 473..1344 | 888..17 | 4360 | 100 | Minus |
| CG3365-PB | 1809 | drongo-RB | 683..1515 | 888..56 | 4165 | 100 | Minus |
| CG3365-PA | 1599 | drongo-RA | 473..1305 | 888..56 | 4165 | 100 | Minus |
| CG3365-PC | 1344 | drongo-RC | 386..467 | 975..894 | 410 | 100 | Minus |
| CG3365-PB | 1809 | drongo-RB | 596..677 | 975..894 | 410 | 100 | Minus |
| CG3365-PA | 1599 | drongo-RA | 386..467 | 975..894 | 410 | 100 | Minus |
| CG3365-PB | 1809 | drongo-RB | 1516..1549 | 50..17 | 170 | 100 | Minus |
| CG3365-PA | 1599 | drongo-RA | 1306..1339 | 50..17 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 3518 | CG3365-RH | 1599..2557 | 975..17 | 4750 | 99.8 | Minus |
| drongo-RC | 2672 | CG3365-RC | 756..1714 | 975..17 | 4750 | 99.8 | Minus |
| drongo-RI | 2625 | CG3365-RI | 1599..2519 | 975..55 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..836953 | 566..975 | 1975 | 98.8 | Plus |
| 2L | 23513712 | 2L | 834973..835292 | 55..374 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 835353..835548 | 373..568 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 834545..834583 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:01 has no hits.
BS07494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:31 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 386..1344 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:13 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 386..1344 | 17..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:44 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 756..1718 | 12..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:12 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 756..1718 | 12..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:12 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 836546..836953 | 568..975 | 99 | | Plus |
| 2L | 834541..834583 | 12..55 | 95 | <- | Plus |
| 2L | 834974..835290 | 56..372 | 100 | <- | Plus |
| 2L | 835353..835547 | 373..567 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:44 Download gff for
BS07494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 834541..834583 | 12..55 | 95 | <- | Plus |
| arm_2L | 834974..835290 | 56..372 | 100 | <- | Plus |
| arm_2L | 835353..835547 | 373..567 | 100 | <- | Plus |
| arm_2L | 836546..836953 | 568..975 | 99 | | Plus |
BS07494.5prime Sequence
921 bp (820 high quality bases) assembled on 2006-01-06
> BS07494.5prime
GAAGTTATCAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCC
TGCGCAGCCATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGG
GATCCGAAGCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGA
CAAGTATGAGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGT
CGCTGGCCAATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCAC
ACTCAGAATGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCC
TGCTGCCCAGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGT
CGAGTAACTCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTAT
AATCACCAGAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGG
TGGCGGATTGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTC
TTTCCGACACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGAC
TTTGTGGCTGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCG
TTCCACAGGATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCA
ATGGCTACGCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAA
CAGCAGTTGCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGG
TCATCAGGGCACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACA
ATGCAGTGGGTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCCCAAG
GGGCGGAATGCAGCGATGGCGCCCAGTGAGGATCGATATGCCGCTCTAAA
GGATCTCGACGAGCAGCTGCG
BS07494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3365-PB | 1809 | drongo-RB | 211..1046 | 17..852 | 4180 | 100 | Plus |
| CG3365-PA | 1599 | drongo-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
| CG3365-PC | 1344 | drongo-RC | 1..836 | 17..852 | 4180 | 100 | Plus |
| CG3365-PB | 1809 | drongo-RB | 1051..1115 | 857..921 | 300 | 98.4 | Plus |
| CG3365-PA | 1599 | drongo-RA | 841..905 | 857..921 | 300 | 98.4 | Plus |
| CG3365-PC | 1344 | drongo-RC | 841..905 | 857..921 | 300 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RI | 2625 | CG3365-RI | 1214..2118 | 17..921 | 4465 | 99.7 | Plus |
| drongo-RH | 3518 | CG3365-RH | 1214..2118 | 17..921 | 4465 | 99.7 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1275 | 17..921 | 4465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 811..17 | 3975 | 100 | Minus |
| 2L | 23513712 | 2L | 835436..835548 | 921..809 | 505 | 96.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:53:28 has no hits.
BS07494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:32 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:14 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-PC | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:04 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 365..1275 | 7..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:59 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 365..1275 | 7..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:59 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 836546..837344 | 7..809 | 99 | | Minus |
| 2L | 835436..835547 | 810..921 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:04 Download gff for
BS07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 835436..835547 | 810..921 | 97 | <- | Minus |
| arm_2L | 836546..837344 | 7..809 | 99 | | Minus |
BS07494.complete Sequence
1376 bp (1376 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635889
> BS07494.complete
GAAGTTATCAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCC
TGCGCAGCCATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGG
GATCCGAAGCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGA
CAAGTATGAGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGT
CGCTGGCCAATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCAC
ACTCAGAATGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCC
TGCTGCCCAGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGT
CGAGTAACTCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTAT
AATCACCAGAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGG
TGGCGGATTGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTC
TTTCCGACACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGAC
TTTGTGGCTGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCG
TTCCACAGGATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCA
ATGGCTACGCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAA
CAGCAGTTGCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGG
TCATCAGGGCACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACA
ATGCAGTGGGTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCCCAAG
GGCGGAAATGCAGCGATGGCGCCCAGTGAGGATCGATATGCCGCTCTTAA
GGATCTCGACGAGCAGCTGCGAGAACTGAAGGCCAGCGAAAGCGCCACAG
AGACGCCCACGCCCACCAGTGGCAATGTTCAGGCCACAGATGCCTTTGGT
GGAGCCCTCAACAACAATCCAAATCCCTTCAAGGGCCAGCAACAGCAGCA
GCTCAGCAGCCATGTGGTGAATCCATTCCAGCAGCAGCAACAGCAGCAGC
ACCAGCAGAATCTCTATGGCCAGTTGACGCTCATACCAAATGCCTACGGC
AGCAGTTCCCAGCAGCAGATGGGGCACCATCTCCTCCAGCAGCAGCAGCA
GCAACAGCAGAGCTTCTTCAACTTCAACAACAACGGGTTCGCCATCTCGC
AGGGTCTGCCCAACGGCTGCGGCTTCGGCAGCATGCAACCCGCTCCTGTG
ATGGCCAACAATCCCTTTGCAGCCAGCGGCGCCATGAACACCAACAATCC
ATTCTTATGAAAGCTTTCTAGACCAT
BS07494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 1554 | CG3365-PH | 211..1554 | 17..1360 | 6720 | 100 | Plus |
| drongo-RC | 1344 | CG3365-PC | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| drongo-RI | 1545 | CG3365-PI | 211..1516 | 17..1322 | 6530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RH | 3518 | CG3365-RH | 1214..2557 | 17..1360 | 6720 | 100 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1714 | 17..1360 | 6720 | 100 | Plus |
| drongo-RI | 2625 | CG3365-RI | 1214..2519 | 17..1322 | 6530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 811..17 | 3975 | 100 | Minus |
| 2L | 23513712 | 2L | 834973..835292 | 1322..1003 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 835353..835548 | 1004..809 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 834545..834583 | 1360..1322 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:12:05 has no hits.
BS07494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:35 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 1..1344 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:37 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 113..1466 | 7..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:02 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 371..1713 | 17..1359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:35 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 113..1466 | 7..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:20 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 371..1713 | 17..1359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:20 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 834974..835290 | 1005..1321 | 100 | <- | Minus |
| 2L | 834546..834583 | 1322..1359 | 100 | <- | Minus |
| 2L | 835353..835547 | 810..1004 | 100 | <- | Minus |
| 2L | 836546..837338 | 17..809 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:02 Download gff for
BS07494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 834546..834583 | 1322..1359 | 100 | <- | Minus |
| arm_2L | 834974..835290 | 1005..1321 | 100 | <- | Minus |
| arm_2L | 835353..835547 | 810..1004 | 100 | <- | Minus |
| arm_2L | 836546..837338 | 17..809 | 100 | | Minus |
BS07494.pep Sequence
Translation from 16 to 1359
> BS07494.pep
MATFTQDEIDFLRSHGNELCAKTWLGLWDPKRAVHQQEQRELMMDKYERK
RYYLEPASPLKSLANAVNLKSSAPATNHTQNGHQNGYASIHLTPPAAQRT
SANGLQKVANSSSNSSGKTSSSISRPHYNHQNNSQNNNHDAFGLGGGLSS
LNSAGSTSTGALSDTSSCASNGFGADCDFVADFGSANIFDATSARSTGSP
AVSSVSSVGSSNGYAKVQPIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTE
NFADFDHAPIYNAVGAPLQNGHTTSPPKGGNAAMAPSEDRYAALKDLDEQ
LRELKASESATETPTPTSGNVQATDAFGGALNNNPNPFKGQQQQQLSSHV
VNPFQQQQQQQHQQNLYGQLTLIPNAYGSSSQQQMGHHLLQQQQQQQQSF
FNFNNNGFAISQGLPNGCGFGSMQPAPVMANNPFAASGAMNTNNPFL*
BS07494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-PH | 517 | CG3365-PH | 71..517 | 1..447 | 2348 | 100 | Plus |
| drongo-PC | 447 | CG3365-PC | 1..447 | 1..447 | 2348 | 100 | Plus |
| drongo-PI | 514 | CG3365-PI | 71..507 | 1..437 | 2289 | 99.8 | Plus |
| drongo-PG | 603 | CG3365-PG | 1..409 | 1..366 | 1400 | 71.1 | Plus |
| drongo-PF | 673 | CG3365-PF | 71..479 | 1..366 | 1400 | 71.1 | Plus |
| drongo-PG | 603 | CG3365-PG | 398..603 | 229..447 | 971 | 86.3 | Plus |
