Clone Sequence Records
BS07496.3prime Sequence
885 bp (807 high quality bases) assembled on 2006-01-06
> BS07496.3prime
ATGGTCTAGAAAGCTTCTAAGAGGTGGCAGCACCACTCAGGGTATTAGCC
GAAGGATAATAAGATCGCATGAGCATGCAACGCTCCCGATCGATGAAGAG
ACTGCGCCTCTTCAGCATAATCTCTCGCTCGAGACGAGCACGTGAATTGA
CCAGATCCGTCTTGACCCGCTCCGCCTCCTCTAGTTCATGAAGAAGGGCT
GATACACTACTTTGGATGGTGTGCACCCCATCGATAAGCTCCTGCTGGGC
CAAATCGCGGCAGTTCTCCACATTTGGACGATAGCTGCGGTTGTCCATTC
GCGTTTGGGCAACCTTCATGGATGAATCGAAGGAGTTAATGCGACGTTTC
ATCTGCTCAATACGGTTCTCCACATCGGCCGTGCCCTGCAGGATATTCTT
GAGATCATTCTCGAACCGTTGCACCGCCTCTTGGGTGCAGTTGATCCTGG
AGGTCAGAGCCTTTTCAACGACATCGGCCTGTGTGCGAATATCTCTGGCC
GCGTTCATTAGTGTCGAGTTCAAAGTGTTTCGCAGGGCCACCGACTTGAG
GCGACACTTTTCGCACTCGTCCAGGGTCTCCATGCTGAAGTGTTCCCAGT
ACTTTTCAGAAGCTTGTTCCGGTGGCTGGCGAACTGCTCCCGGTCGGAAC
ATGATCGTCCTAGAGCAGTTATTTAAACCGGTATTTATTGTATCAATCTC
GTAGGACTCCTTCTTGTCACTCCAATCGTATTCGAGTCGCTGCCTAGCCG
TTCGATTCTCAACCTGCTGCGAATTGAAGTCATCCAGTGTTTTCATCAAT
AACCTTCGGATTTCAGCTATAAAGGCCAACTCGTTGACCAGCTCCTCTTC
CACCTGGTCGCGAACCAACTCGGGATCTGGTCGTG
BS07496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4767-PA | 1758 | Tektin-A-RA | 890..1758 | 885..17 | 4295 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-A-RB | 2169 | CG4767-RB | 1127..1996 | 885..16 | 4320 | 99.8 | Minus |
Tektin-A-RA | 2027 | CG4767-RA | 985..1854 | 885..16 | 4320 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15855408..15856277 | 885..16 | 4320 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:29:15 has no hits.
BS07496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:36 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4767-PA | 890..1758 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:19 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4767-PA | 890..1758 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:39 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 985..1854 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:42 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 985..1854 | 16..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:42 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15855408..15856277 | 16..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:39 Download gff for
BS07496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15855408..15856277 | 16..885 | 99 | | Minus |
BS07496.5prime Sequence
876 bp (707 high quality bases) assembled on 2006-01-06
> BS07496.5prime
GAAGTTATCAGTCGACATGAATTGTTTGGAGAAGAAATCGCCGGAGGCAA
ATCCAGAGTGTAAGGGCAGGACGATTGAGTTAAATCCGGGATCTGCTTGC
CCGGCTCCGCTAATCTGTCCCCTGCCGACGGAACCACCCTCCCACCGACT
GAAAAAGCCACCGCAGCCCGCCCTGGTAGCCTTGACACCTCATCCCGATG
AGGCCGCCCAACAGCACCTGGTCCAAAATATTATGGGTTCTGCCCAAGAG
CATCAGAAGCTACAGGCGGATCTCCAAGCGGGAGTTGACCAACAGCAGAT
GCAATTGGCCGATATGCGAGCTGAACAGTACAAGCAATCGAACAAGCCAC
TCAGAATGGAGGAAGTGCAGTTTGCGCGTTCCATGGACCCCGAAGCAGAT
GACTTGCGGAATCCACCGTGCTACTTGCCCCAACAGGGCGATGAGTTGCC
TCACAAGGACCAGCTGATGCCCATGGGTCCGATTGGTCCATGGGCATCGG
GCAAGGTGGATTGGAGCCCCATGGCCGGCATAACGGGAACGAGACCCGTT
GTGGACCGCTACTCGATCACCCGGTACAGCCCAAATGAATGGCGGACCAG
GAACCACGAGACTGTACAGGTCGTCAACGCAAGCTTGGGCAGGGCGGATA
AAAACCGCTTCAGTTCGACCACCGAATTCCTAAGGCTCTCCGCCCTGGTG
GACAAGTCGCNAAAGGAAACCACCGACAAACTTAGGATCCGTTCGCAGTT
GATTGGCAAATGGAAGAATACTTTGGAGAACGCCATTAAGGCGATGGCCG
ATGAGATATCCACTATGGAAGTGGAGCGTATTAAGCTGCGGAAATCCATG
GTGGTTTTGGGCGTACCGGAAATCAT
BS07496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4767-PA | 1758 | Tektin-A-RA | 1..855 | 17..871 | 4256 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-A-RB | 2169 | CG4767-RB | 238..1092 | 17..871 | 4264 | 99.9 | Plus |
Tektin-A-RA | 2027 | CG4767-RA | 96..950 | 17..871 | 4264 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15854363..15854722 | 17..376 | 1800 | 100 | Plus |
2L | 23513712 | 2L | 15854813..15855088 | 376..651 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 15855154..15855373 | 652..871 | 1089 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:09:59 has no hits.
BS07496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:37 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4767-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:20 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4767-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:22 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 91..955 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:41 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 91..955 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:41 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15854358..15854722 | 9..376 | 98 | -> | Plus |
2L | 15854814..15855088 | 377..651 | 100 | -> | Plus |
2L | 15855154..15855378 | 652..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:22 Download gff for
BS07496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15854358..15854722 | 9..376 | 98 | -> | Plus |
arm_2L | 15854814..15855088 | 377..651 | 100 | -> | Plus |
arm_2L | 15855154..15855378 | 652..876 | 98 | | Plus |
BS07496.complete Sequence
1790 bp assembled on 2008-08-14
GenBank Submission: FJ635890
> BS07496.complete
GAAGTTATCAGTCGACATGAATTGTTTGGAGAAGAAATCGCCGGAGGCAA
ATCCAGAGTGTAAGGGCAGGACGATTGAGTTAAATCCGGGATCTGCTTGC
CCGGCTCCGCTAATCTGTCCCCTGCCGACGGAACCACCCTCCCACCGACT
GAAAAAGCCACCGCAGCCCGCCCTGGTAGCCTTGACACCTCATCCCGATG
AGGCCGCCCAACAGCACCTGGTCCAAAATATTATGGGTTCTGCCCAAGAG
CATCAGAAGCTACAGGCGGATCTCCAAGCGGGAGTTGACCAACAGCAGAT
GCAATTGGCCGATATGCGAGCTGAACAGTACAAGCAATCGAACAAGCCAC
TCAGAATGGAGGAAGTGCAGTTTGCGCGTTCCATGGACCCCGAAGCAGAT
GACTTGCGGAATCCACCGTGCTACTTGCCCCAACAGGGCGATGAGTTGCC
TCACAAGGACCAGCTGATGCCCATGGGTCCGATTGGTCCATGGGCATCGG
GCAAGGTGGATTGGAGCCCCATGGCCGGCATAACGGGAACGAGACCCGTT
GTGGACCGCTACTCGATCACCCGGTACAGCCCAAATGAATGGCGGACCAG
GAACCACGAGACTGTACAGGTCGTCAACGCAAGCTTGGGCAGGGCGGATA
AAAACCGCTTCAGTTCGACCACCGAATTCCTAAGGCTCTCCGCCCTGGTG
GACAAGTCGCAAAAGGAAACCACCGACAAACTTAGGATCCGTTCGCAGTT
GATTGGCAAATGGAAGAATACTTTGGAGAACGCCATTAAGGCGATGGCCG
ATGAGATATCCACTATGGAAGTGGAGCGTATTAAGCTGCGGAAATCCATG
GTGGTTTTGGGCGTACCGGAATCCATAGCCAAGGAGTGCATTGAGAAGAG
GGCCACACGACCAGATACCGAGTTGGTTCGCGACCAGGTGGAAGAGGAGC
TGGTCAACGAGTTGGCCCTTATAGCTGAAATCCGAAGGTTATTGATGAAA
ACACTGGATGACTTCAATTCGCAGCAGGTTGAGAATCGAACGGCTAGGCA
GCGACTCGAATACGATTGGAGTGACAAGAAGGAGTCCTACGAGATTGATA
CAATAAATACCGGTTTAAATAACTGCTCTAGGACGATCATGTTCCGACCG
GGAGCAGTTCGCCAGCCACCGGAACAAGCTTCTGAAAAGTACTGGGAACA
CTTCAGCATGGAGACCCTGGACGAGTGCGAAAAGTGTCGCCTCAAGTCGG
TGGCCCTGCGAAACACTTTGAACTCGACACTAATGAACGCGGCCAGAGAT
ATTCGCACACAGGCCGATGTCGTTGAAAAGGCTCTGACCTCCAGGATCAA
CTGCACCCAAGAGGCGGTGCAACGGTTCGAGAATGATCTCAAGAATATCC
TGCAGGGCACGGCCGATGTGGAGAACCGTATTGAGCAGATGAAACGTCGC
ATTAACTCCTTCGATTCATCCATGAAGGTTGCCCAAACGCGAATGGACAA
CCGCAGCTATCGTCCAAATGTGGAGAACTGCCGCGATTTGGCCCAGCAGG
AGCTTATCGATGGGGTGCACACCATCCAAAGTAGTGTATCAGCCCTTCTT
CATGAACTAGAGGAGGCGGAGCGGGTCAAGACGGATCTGGTCAATTCACG
TGCTCGTCTCGAGCGAGAGATTATGCTGAAGAGGCGCAGTCTCTTCATCG
ATCGGGAGCGTTGCATGCTCATGCGATCTTATTATCCTTCGGCTAATACC
CTGAGTGGTGCTGCCACCTCTTAGAAGCTTTCTAGACCAT
BS07496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-A-RB | 1758 | CG4767-PB | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Tektin-A-RA | 1758 | CG4767-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-A-RB | 2169 | CG4767-RB | 238..1996 | 17..1775 | 8795 | 100 | Plus |
Tektin-A-RA | 2027 | CG4767-RA | 96..1854 | 17..1775 | 8795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15855154..15856277 | 652..1775 | 5620 | 100 | Plus |
2L | 23513712 | 2L | 15854363..15854722 | 17..376 | 1800 | 100 | Plus |
2L | 23513712 | 2L | 15854813..15855088 | 376..651 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:57 has no hits.
BS07496.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:10 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 233..1996 | 9..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:53 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 96..1853 | 17..1774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:51 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 238..1995 | 17..1774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:04 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-A-RA | 96..1853 | 17..1774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:04 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15854363..15854722 | 17..376 | 100 | -> | Plus |
2L | 15854814..15855088 | 377..651 | 100 | -> | Plus |
2L | 15855154..15856276 | 652..1774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:53 Download gff for
BS07496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15854363..15854722 | 17..376 | 100 | -> | Plus |
arm_2L | 15854814..15855088 | 377..651 | 100 | -> | Plus |
arm_2L | 15855154..15856276 | 652..1774 | 100 | | Plus |
BS07496.pep Sequence
Translation from 16 to 1773
> BS07496.pep
MNCLEKKSPEANPECKGRTIELNPGSACPAPLICPLPTEPPSHRLKKPPQ
PALVALTPHPDEAAQQHLVQNIMGSAQEHQKLQADLQAGVDQQQMQLADM
RAEQYKQSNKPLRMEEVQFARSMDPEADDLRNPPCYLPQQGDELPHKDQL
MPMGPIGPWASGKVDWSPMAGITGTRPVVDRYSITRYSPNEWRTRNHETV
QVVNASLGRADKNRFSSTTEFLRLSALVDKSQKETTDKLRIRSQLIGKWK
NTLENAIKAMADEISTMEVERIKLRKSMVVLGVPESIAKECIEKRATRPD
TELVRDQVEEELVNELALIAEIRRLLMKTLDDFNSQQVENRTARQRLEYD
WSDKKESYEIDTINTGLNNCSRTIMFRPGAVRQPPEQASEKYWEHFSMET
LDECEKCRLKSVALRNTLNSTLMNAARDIRTQADVVEKALTSRINCTQEA
VQRFENDLKNILQGTADVENRIEQMKRRINSFDSSMKVAQTRMDNRSYRP
NVENCRDLAQQELIDGVHTIQSSVSALLHELEEAERVKTDLVNSRARLER
EIMLKRRSLFIDRERCMLMRSYYPSANTLSGAATS*
BS07496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-A-PB | 585 | CG4767-PB | 1..585 | 1..585 | 3017 | 100 | Plus |
Tektin-A-PA | 585 | CG4767-PA | 1..585 | 1..585 | 3017 | 100 | Plus |
CG32820-PB | 520 | CG32820-PB | 124..518 | 185..579 | 433 | 29.4 | Plus |
CG32819-PB | 520 | CG32819-PB | 124..518 | 185..579 | 433 | 29.4 | Plus |
CG17450-PC | 520 | CG17450-PC | 124..518 | 185..579 | 433 | 29.4 | Plus |