Clone BS07496 Report

Search the DGRC for BS07496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptTektin-A-RA
Protein status:BS07496.pep: full length peptide match
Sequenced Size:1790

Clone Sequence Records

BS07496.3prime Sequence

885 bp (807 high quality bases) assembled on 2006-01-06

> BS07496.3prime
ATGGTCTAGAAAGCTTCTAAGAGGTGGCAGCACCACTCAGGGTATTAGCC
GAAGGATAATAAGATCGCATGAGCATGCAACGCTCCCGATCGATGAAGAG
ACTGCGCCTCTTCAGCATAATCTCTCGCTCGAGACGAGCACGTGAATTGA
CCAGATCCGTCTTGACCCGCTCCGCCTCCTCTAGTTCATGAAGAAGGGCT
GATACACTACTTTGGATGGTGTGCACCCCATCGATAAGCTCCTGCTGGGC
CAAATCGCGGCAGTTCTCCACATTTGGACGATAGCTGCGGTTGTCCATTC
GCGTTTGGGCAACCTTCATGGATGAATCGAAGGAGTTAATGCGACGTTTC
ATCTGCTCAATACGGTTCTCCACATCGGCCGTGCCCTGCAGGATATTCTT
GAGATCATTCTCGAACCGTTGCACCGCCTCTTGGGTGCAGTTGATCCTGG
AGGTCAGAGCCTTTTCAACGACATCGGCCTGTGTGCGAATATCTCTGGCC
GCGTTCATTAGTGTCGAGTTCAAAGTGTTTCGCAGGGCCACCGACTTGAG
GCGACACTTTTCGCACTCGTCCAGGGTCTCCATGCTGAAGTGTTCCCAGT
ACTTTTCAGAAGCTTGTTCCGGTGGCTGGCGAACTGCTCCCGGTCGGAAC
ATGATCGTCCTAGAGCAGTTATTTAAACCGGTATTTATTGTATCAATCTC
GTAGGACTCCTTCTTGTCACTCCAATCGTATTCGAGTCGCTGCCTAGCCG
TTCGATTCTCAACCTGCTGCGAATTGAAGTCATCCAGTGTTTTCATCAAT
AACCTTCGGATTTCAGCTATAAAGGCCAACTCGTTGACCAGCTCCTCTTC
CACCTGGTCGCGAACCAACTCGGGATCTGGTCGTG

BS07496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4767-PA 1758 Tektin-A-RA 890..1758 885..17 4295 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-RB 2169 CG4767-RB 1127..1996 885..16 4320 99.8 Minus
Tektin-A-RA 2027 CG4767-RA 985..1854 885..16 4320 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15855408..15856277 885..16 4320 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 00:29:15 has no hits.

BS07496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:36 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4767-PA 890..1758 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:19 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4767-PA 890..1758 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:39 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 985..1854 16..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:42 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 985..1854 16..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:42 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15855408..15856277 16..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:39 Download gff for BS07496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15855408..15856277 16..885 99   Minus

BS07496.5prime Sequence

876 bp (707 high quality bases) assembled on 2006-01-06

> BS07496.5prime
GAAGTTATCAGTCGACATGAATTGTTTGGAGAAGAAATCGCCGGAGGCAA
ATCCAGAGTGTAAGGGCAGGACGATTGAGTTAAATCCGGGATCTGCTTGC
CCGGCTCCGCTAATCTGTCCCCTGCCGACGGAACCACCCTCCCACCGACT
GAAAAAGCCACCGCAGCCCGCCCTGGTAGCCTTGACACCTCATCCCGATG
AGGCCGCCCAACAGCACCTGGTCCAAAATATTATGGGTTCTGCCCAAGAG
CATCAGAAGCTACAGGCGGATCTCCAAGCGGGAGTTGACCAACAGCAGAT
GCAATTGGCCGATATGCGAGCTGAACAGTACAAGCAATCGAACAAGCCAC
TCAGAATGGAGGAAGTGCAGTTTGCGCGTTCCATGGACCCCGAAGCAGAT
GACTTGCGGAATCCACCGTGCTACTTGCCCCAACAGGGCGATGAGTTGCC
TCACAAGGACCAGCTGATGCCCATGGGTCCGATTGGTCCATGGGCATCGG
GCAAGGTGGATTGGAGCCCCATGGCCGGCATAACGGGAACGAGACCCGTT
GTGGACCGCTACTCGATCACCCGGTACAGCCCAAATGAATGGCGGACCAG
GAACCACGAGACTGTACAGGTCGTCAACGCAAGCTTGGGCAGGGCGGATA
AAAACCGCTTCAGTTCGACCACCGAATTCCTAAGGCTCTCCGCCCTGGTG
GACAAGTCGCNAAAGGAAACCACCGACAAACTTAGGATCCGTTCGCAGTT
GATTGGCAAATGGAAGAATACTTTGGAGAACGCCATTAAGGCGATGGCCG
ATGAGATATCCACTATGGAAGTGGAGCGTATTAAGCTGCGGAAATCCATG
GTGGTTTTGGGCGTACCGGAAATCAT

BS07496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4767-PA 1758 Tektin-A-RA 1..855 17..871 4256 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-RB 2169 CG4767-RB 238..1092 17..871 4264 99.9 Plus
Tektin-A-RA 2027 CG4767-RA 96..950 17..871 4264 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15854363..15854722 17..376 1800 100 Plus
2L 23513712 2L 15854813..15855088 376..651 1380 100 Plus
2L 23513712 2L 15855154..15855373 652..871 1089 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 06:09:59 has no hits.

BS07496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:37 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4767-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:20 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4767-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:22 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 91..955 9..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:41 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 91..955 9..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:41 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15854358..15854722 9..376 98 -> Plus
2L 15854814..15855088 377..651 100 -> Plus
2L 15855154..15855378 652..876 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:22 Download gff for BS07496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15854358..15854722 9..376 98 -> Plus
arm_2L 15854814..15855088 377..651 100 -> Plus
arm_2L 15855154..15855378 652..876 98   Plus

BS07496.complete Sequence

1790 bp assembled on 2008-08-14

GenBank Submission: FJ635890

> BS07496.complete
GAAGTTATCAGTCGACATGAATTGTTTGGAGAAGAAATCGCCGGAGGCAA
ATCCAGAGTGTAAGGGCAGGACGATTGAGTTAAATCCGGGATCTGCTTGC
CCGGCTCCGCTAATCTGTCCCCTGCCGACGGAACCACCCTCCCACCGACT
GAAAAAGCCACCGCAGCCCGCCCTGGTAGCCTTGACACCTCATCCCGATG
AGGCCGCCCAACAGCACCTGGTCCAAAATATTATGGGTTCTGCCCAAGAG
CATCAGAAGCTACAGGCGGATCTCCAAGCGGGAGTTGACCAACAGCAGAT
GCAATTGGCCGATATGCGAGCTGAACAGTACAAGCAATCGAACAAGCCAC
TCAGAATGGAGGAAGTGCAGTTTGCGCGTTCCATGGACCCCGAAGCAGAT
GACTTGCGGAATCCACCGTGCTACTTGCCCCAACAGGGCGATGAGTTGCC
TCACAAGGACCAGCTGATGCCCATGGGTCCGATTGGTCCATGGGCATCGG
GCAAGGTGGATTGGAGCCCCATGGCCGGCATAACGGGAACGAGACCCGTT
GTGGACCGCTACTCGATCACCCGGTACAGCCCAAATGAATGGCGGACCAG
GAACCACGAGACTGTACAGGTCGTCAACGCAAGCTTGGGCAGGGCGGATA
AAAACCGCTTCAGTTCGACCACCGAATTCCTAAGGCTCTCCGCCCTGGTG
GACAAGTCGCAAAAGGAAACCACCGACAAACTTAGGATCCGTTCGCAGTT
GATTGGCAAATGGAAGAATACTTTGGAGAACGCCATTAAGGCGATGGCCG
ATGAGATATCCACTATGGAAGTGGAGCGTATTAAGCTGCGGAAATCCATG
GTGGTTTTGGGCGTACCGGAATCCATAGCCAAGGAGTGCATTGAGAAGAG
GGCCACACGACCAGATACCGAGTTGGTTCGCGACCAGGTGGAAGAGGAGC
TGGTCAACGAGTTGGCCCTTATAGCTGAAATCCGAAGGTTATTGATGAAA
ACACTGGATGACTTCAATTCGCAGCAGGTTGAGAATCGAACGGCTAGGCA
GCGACTCGAATACGATTGGAGTGACAAGAAGGAGTCCTACGAGATTGATA
CAATAAATACCGGTTTAAATAACTGCTCTAGGACGATCATGTTCCGACCG
GGAGCAGTTCGCCAGCCACCGGAACAAGCTTCTGAAAAGTACTGGGAACA
CTTCAGCATGGAGACCCTGGACGAGTGCGAAAAGTGTCGCCTCAAGTCGG
TGGCCCTGCGAAACACTTTGAACTCGACACTAATGAACGCGGCCAGAGAT
ATTCGCACACAGGCCGATGTCGTTGAAAAGGCTCTGACCTCCAGGATCAA
CTGCACCCAAGAGGCGGTGCAACGGTTCGAGAATGATCTCAAGAATATCC
TGCAGGGCACGGCCGATGTGGAGAACCGTATTGAGCAGATGAAACGTCGC
ATTAACTCCTTCGATTCATCCATGAAGGTTGCCCAAACGCGAATGGACAA
CCGCAGCTATCGTCCAAATGTGGAGAACTGCCGCGATTTGGCCCAGCAGG
AGCTTATCGATGGGGTGCACACCATCCAAAGTAGTGTATCAGCCCTTCTT
CATGAACTAGAGGAGGCGGAGCGGGTCAAGACGGATCTGGTCAATTCACG
TGCTCGTCTCGAGCGAGAGATTATGCTGAAGAGGCGCAGTCTCTTCATCG
ATCGGGAGCGTTGCATGCTCATGCGATCTTATTATCCTTCGGCTAATACC
CTGAGTGGTGCTGCCACCTCTTAGAAGCTTTCTAGACCAT

BS07496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-RB 1758 CG4767-PB 1..1758 17..1774 8790 100 Plus
Tektin-A-RA 1758 CG4767-PA 1..1758 17..1774 8790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-RB 2169 CG4767-RB 238..1996 17..1775 8795 100 Plus
Tektin-A-RA 2027 CG4767-RA 96..1854 17..1775 8795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15855154..15856277 652..1775 5620 100 Plus
2L 23513712 2L 15854363..15854722 17..376 1800 100 Plus
2L 23513712 2L 15854813..15855088 376..651 1380 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:59:57 has no hits.

BS07496.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:10 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 233..1996 9..1775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:53 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 96..1853 17..1774 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:51 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 238..1995 17..1774 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:04 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
Tektin-A-RA 96..1853 17..1774 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:04 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15854363..15854722 17..376 100 -> Plus
2L 15854814..15855088 377..651 100 -> Plus
2L 15855154..15856276 652..1774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:53 Download gff for BS07496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15854363..15854722 17..376 100 -> Plus
arm_2L 15854814..15855088 377..651 100 -> Plus
arm_2L 15855154..15856276 652..1774 100   Plus

BS07496.pep Sequence

Translation from 16 to 1773

> BS07496.pep
MNCLEKKSPEANPECKGRTIELNPGSACPAPLICPLPTEPPSHRLKKPPQ
PALVALTPHPDEAAQQHLVQNIMGSAQEHQKLQADLQAGVDQQQMQLADM
RAEQYKQSNKPLRMEEVQFARSMDPEADDLRNPPCYLPQQGDELPHKDQL
MPMGPIGPWASGKVDWSPMAGITGTRPVVDRYSITRYSPNEWRTRNHETV
QVVNASLGRADKNRFSSTTEFLRLSALVDKSQKETTDKLRIRSQLIGKWK
NTLENAIKAMADEISTMEVERIKLRKSMVVLGVPESIAKECIEKRATRPD
TELVRDQVEEELVNELALIAEIRRLLMKTLDDFNSQQVENRTARQRLEYD
WSDKKESYEIDTINTGLNNCSRTIMFRPGAVRQPPEQASEKYWEHFSMET
LDECEKCRLKSVALRNTLNSTLMNAARDIRTQADVVEKALTSRINCTQEA
VQRFENDLKNILQGTADVENRIEQMKRRINSFDSSMKVAQTRMDNRSYRP
NVENCRDLAQQELIDGVHTIQSSVSALLHELEEAERVKTDLVNSRARLER
EIMLKRRSLFIDRERCMLMRSYYPSANTLSGAATS*

BS07496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tektin-A-PB 585 CG4767-PB 1..585 1..585 3017 100 Plus
Tektin-A-PA 585 CG4767-PA 1..585 1..585 3017 100 Plus
CG32820-PB 520 CG32820-PB 124..518 185..579 433 29.4 Plus
CG32819-PB 520 CG32819-PB 124..518 185..579 433 29.4 Plus
CG17450-PC 520 CG17450-PC 124..518 185..579 433 29.4 Plus