Clone Sequence Records
BS07502.3prime Sequence
866 bp (854 high quality bases) assembled on 2006-01-06
> BS07502.3prime
ATGGTCTAGAAAGCTTTCACTCGCAGGCTATTTTGCCATCGAAACTACTG
AGGGCAATGGCGAATGCCTGCATGGCGCACAGGGGATAGCGATAGTCCAT
GGTGAAGACGTCCTCCGAGGTGCGGCCGAACTGCATTACTATGTACTCCG
GATCGGAGTCGTGGACCAACTGAAAGTTCTTCACCGACGCCTGGGTGACG
CGCCCATGAAAGTTGAGCACATACGATTGGGTTTCATCGTTCCACACTGG
CGTCTTATTGTGCAGCTCCACGATGTTGTCCATGTTCTTCATTTTCCATA
GGTCAAGGATGCCCTGCTGTTTGGGATCCGCCGAACTGATCTTGACACGC
TGATCGTCCTCAGTCATGCCGGGCAGTATAACAGTCATGTTGCGTGGCCC
CTTGAATCCCAAAATGTTGGTGTCATAAATGATGACGGCCAAGTCGAGTC
GAGGACTCTCTGTGCTCTCCTTGTTGCCGTTGTCAAAGACCGTGAAGGAT
GTGCCAAAGACATTAGAGCGCAGTTTGCCACAGAAGCCATCGGCATTGCG
AGACAAATCCGTGGGATCGCAGCTGACAATGTAGTTGGATGTCTTGCTCT
TCTTGCGTTTGCGACCTCCCAGCAGAAATATCTTCTTGCCGTAGTCACGT
TCCAGATGCAAGTAGTAGATGGGAAAGAGGCCGCGGTCCATGCCCTTCCT
GTCCCGCGTAATGCGGCACTTGTAGAGCACTCCCTGTGGCGCTGGTTGCA
TCACGAACTGGTCGATATTGCCGATGACATCTCCCTCGGACTCGCCGCCA
GTTCCGTTCCCCGTCCCGTTGCTGCTGCCGTCCAGCGTTGCGTCCTTGTA
CNGCGATGAGGCCATG
BS07502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9398-PA | 1332 | king-tubby-RA | 483..1332 | 866..17 | 4231 | 99.8 | Minus |
| CG9398-PB | 1383 | king-tubby-RB | 534..1383 | 866..17 | 4231 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RC | 2523 | CG9398-RC | 1209..2058 | 866..17 | 4239 | 99.9 | Minus |
| ktub-RB | 2496 | CG9398-RB | 1182..2031 | 866..17 | 4239 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122968..21123239 | 288..17 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 21122218..21122470 | 866..614 | 1254 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21122524..21122717 | 617..424 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 21122774..21122911 | 424..287 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 15:08:41 has no hits.
BS07502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:38 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-PA | 483..1332 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:21 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-PB | 534..1383 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:49 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 1182..2038 | 8..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:56 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 1182..2038 | 8..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:56 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21122218..21122468 | 616..866 | 99 | -> | Minus |
| 2R | 21122526..21122716 | 425..615 | 100 | -> | Minus |
| 2R | 21122774..21122911 | 287..424 | 100 | -> | Minus |
| 2R | 21122970..21123246 | 8..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:49 Download gff for
BS07502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17010475..17010751 | 8..286 | 98 | | Minus |
| arm_2R | 17009723..17009973 | 616..866 | 99 | -> | Minus |
| arm_2R | 17010031..17010221 | 425..615 | 100 | -> | Minus |
| arm_2R | 17010279..17010416 | 287..424 | 100 | -> | Minus |
BS07502.5prime Sequence
923 bp (751 high quality bases) assembled on 2006-01-06
> BS07502.5prime
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCNAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGAG
CACAGAGAGTCCTCGACTCGACT
BS07502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9398-PA | 1332 | king-tubby-RA | 1..907 | 17..923 | 4516 | 99.8 | Plus |
| CG9398-PB | 1383 | king-tubby-RB | 52..958 | 17..923 | 4516 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 700..1606 | 17..923 | 4524 | 99.9 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1633 | 281..923 | 3204 | 99.8 | Plus |
| ktub-RC | 2523 | CG9398-RC | 700..964 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 281..751 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 21121639..21121903 | 17..281 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122699 | 748..923 | 869 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:30:16 has no hits.
BS07502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:39 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:22 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-PB | 46..958 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:16:27 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1606 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:50 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1606 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:50 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21121633..21121903 | 9..281 | 98 | -> | Plus |
| 2R | 21122001..21122468 | 282..749 | 100 | -> | Plus |
| 2R | 21122526..21122699 | 750..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:16:27 Download gff for
BS07502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009138..17009408 | 9..281 | 98 | -> | Plus |
| arm_2R | 17009506..17009973 | 282..749 | 100 | -> | Plus |
| arm_2R | 17010031..17010204 | 750..923 | 99 | | Plus |
BS07502.complete Sequence
1364 bp (1364 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635891
> BS07502.complete
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGAG
CACAGAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAACA
TTTTGGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCATG
ACTGAGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGCA
GGGCATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAGC
TGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCTC
AACTTTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGGT
CCACGACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCGG
AGGACGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGCA
TTCGCCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGTGAAA
GCTTTCTAGACCAT
BS07502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 1383 | CG9398-PB | 52..1383 | 17..1348 | 6660 | 100 | Plus |
| ktub-RC | 1410 | CG9398-PC | 343..1410 | 281..1348 | 5340 | 100 | Plus |
| ktub-RC | 1410 | CG9398-PC | 52..316 | 17..281 | 1325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 700..2031 | 17..1348 | 6660 | 100 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..2058 | 281..1348 | 5340 | 100 | Plus |
| ktub-RC | 2523 | CG9398-RC | 700..964 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 281..751 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 21122968..21123239 | 1077..1348 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 21121639..21121903 | 17..281 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122717 | 748..941 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 21122774..21122911 | 941..1078 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:24:05 has no hits.
BS07502.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:37 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 46..1383 | 9..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:42 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 692..2036 | 9..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:32 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 700..2030 | 17..1347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:38 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 692..2036 | 9..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:47 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 700..2030 | 17..1347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:47 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21122970..21123238 | 1079..1347 | 100 | | Plus |
| 2R | 21121639..21121903 | 17..281 | 100 | -> | Plus |
| 2R | 21122001..21122468 | 282..749 | 100 | -> | Plus |
| 2R | 21122526..21122716 | 750..940 | 100 | -> | Plus |
| 2R | 21122774..21122911 | 941..1078 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:32 Download gff for
BS07502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009144..17009408 | 17..281 | 100 | -> | Plus |
| arm_2R | 17009506..17009973 | 282..749 | 100 | -> | Plus |
| arm_2R | 17010031..17010221 | 750..940 | 100 | -> | Plus |
| arm_2R | 17010279..17010416 | 941..1078 | 100 | -> | Plus |
| arm_2R | 17010475..17010743 | 1079..1347 | 100 | | Plus |
BS07502.pep Sequence
Translation from 16 to 1347
> BS07502.pep
MEAYIRQKRASPGMVQASDLQINRPMSGMRSNSRELHAYDGPMQFISSPQ
NPDQILTNGSPGGINPVAMNTSRNHSNNMRSLSTINQEADLIEEISSHEL
EDEESSPVTVIEQHQQSASHSANSTQSQKPRARQHSFSDNLDEDDYTNRN
VAGAAPVRPAGMASSPYKDATLDGSSNGTGNGTGGESEGDVIGNIDQFVM
QPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGGRKRKK
SKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGNKESTESPR
LDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDL
WKMKNMDNIVELHNKTPVWNDETQSYVLNFHGRVTQASVKNFQLVHDSDP
EYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIALSSFDGKIACE*
BS07502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-PB | 460 | CG9398-PB | 18..460 | 1..443 | 2319 | 100 | Plus |
| ktub-PC | 469 | CG9398-PC | 18..469 | 1..443 | 2299 | 98 | Plus |
| Tusp-PG | 1430 | CG5586-PG | 1354..1424 | 362..435 | 195 | 50 | Plus |
| Tusp-PE | 1432 | CG5586-PE | 1356..1426 | 362..435 | 195 | 50 | Plus |
| Tusp-PD | 1432 | CG5586-PD | 1356..1426 | 362..435 | 195 | 50 | Plus |
