Clone Sequence Records
BS07513.3prime Sequence
925 bp (844 high quality bases) assembled on 2006-01-06
> BS07513.3prime
ATGGTCTAGAAAGCTTTCAGGAAAAGATTATATTGAAGAGCAACTTCAGT
TCAGCAGATGCACTGCACCTAGAGTCACAGAGGACCACATCCGCGTAGAT
CTGATGCTCACGACTGTATGTGAGGTTCTTAACGGTGATGAATTTCGGCT
GAACAACGCGCTGGAAGAGGTCCTCCTTGCGCTGGGCATAGCAGAGCTCG
CCGCACGGGCATCTGGGAGCCTCCCTTATCAGATCTATTAGCACAGCGGG
AATAGAGCCCGCGGACAAGGGCAGCATATACTTATCCACAGCTCGAGCTC
CCAAAAGCCACAAAGGTTGCGGCGAATTAGATGCCGCCTTTTGCAGATAC
ATTTGCTGCGCGGCATCTGCATTGAATTCCTTGAAGCAATTGCCCCACAC
ATCCAACAGGTCGATCCGTAGATCCTCGACAGCAGAGGGCAGGGACTCTA
GTTCGTTGCTGCACACATAAAGTTTACGCAGTGCTTTCATCCGGCGAATG
GCAAAGGGCAGCCGACTCAGCAGATTGTTGTTGAGATTCAGCGATACAAG
CGACTCGAATTTAACCAGCGGAGGTGGAAAGTAAGTCAGCCCGTTGCCCG
ACAGATCCAGCTCGCCGAGCGACTGACAGAGCTTAGTGCCCCGCAGCCAG
CACCAGTCATTCTGAGTACCCAGTAAGTTGTTGCCCAGGTGCAGCGAGGT
GAGCGGAAGACGACCCAGCTCCGAGGGAATCTTGGTCAGCTTGTTACCGC
TGACATCCAGCTTTGTGAGGTTGCGCAGGGTGCATATCTCGAAGCTCAGC
TTCACTAGCTGGCTGTTGTTGATGGTCAGCGATTTGAGGGTGCGCGGAAA
TCCCTTGATGGGATACTCGCTCCGCTTGCTGATTACCATGCGCACCTGGG
GCTGTGCCTTCTGCGGGAATGCCGT
BS07513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6098-PA | 1287 | Lrr47-RA | 388..1287 | 916..17 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 470..1378 | 925..17 | 4515 | 99.8 | Minus |
Lrr47-RA | 1589 | CG6098-RA | 470..1378 | 925..17 | 4515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10518058..10518773 | 732..17 | 3580 | 100 | Minus |
2L | 23513712 | 2L | 10517804..10517998 | 925..731 | 945 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-08 15:08:29 has no hits.
BS07513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:58 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-PA | 379..1287 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:46 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6098-PA | 379..1287 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:48 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 470..1378 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:55 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 470..1378 | 17..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:55 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517804..10517998 | 731..925 | 98 | -> | Minus |
2L | 10518060..10518773 | 17..730 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:48 Download gff for
BS07513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517804..10517998 | 731..925 | 98 | -> | Minus |
arm_2L | 10518060..10518773 | 17..730 | 100 | | Minus |
BS07513.5prime Sequence
934 bp (779 high quality bases) assembled on 2006-01-06
> BS07513.5prime
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAAATGC
BS07513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6098-PA | 1287 | Lrr47-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 87..1009 | 12..934 | 4585 | 99.8 | Plus |
Lrr47-RA | 1589 | CG6098-RA | 87..1009 | 12..934 | 4585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10517421..10517998 | 12..589 | 2875 | 99.8 | Plus |
2L | 23513712 | 2L | 10518058..10518404 | 588..934 | 1720 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:20:41 has no hits.
BS07513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:59 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:48 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6098-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:12 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 87..1009 | 12..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:56 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 87..1009 | 12..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:56 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517421..10517998 | 12..589 | 99 | -> | Plus |
2L | 10518060..10518404 | 590..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:12 Download gff for
BS07513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517421..10517998 | 12..589 | 99 | -> | Plus |
arm_2L | 10518060..10518404 | 590..934 | 99 | | Plus |
BS07513.complete Sequence
1319 bp (1319 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635892
> BS07513.complete
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAATG
CAGATGCCGCGCAGCAAATGTATCTGCAAAAGGCGGCATCTAATTCGCCG
CAACCTTTGTGGCTTTTGGGAGCTCGAGCTGTGGATAAGTATATGCTGCC
CTTGTCCGCGGGCTCTATTCCCGCTGTGCTAATAGATCTGATAAGGGAGG
CTCCCAGATGCCCGTGCGGCGAGCTCTGCTATGCCCAGCGCAAGGAGGAC
CTCTTCCAGCGCGTTGTTCAGCCGAAATTCATCACCGTTAAGAACCTCAC
ATACAGTCGTGAGCATCAGATCTACGCGGATGTGGTCCTCTGTGACTCTA
GGTGCAGTGCATCTGCTGAACTGAAGTTGCTCTTCAATATAATCTTTTCC
TGAAAGCTTTCTAGACCAT
BS07513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1287 | CG6098-PB | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Lrr47-RA | 1287 | CG6098-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-RB | 1874 | CG6098-RB | 87..1378 | 12..1303 | 6445 | 99.9 | Plus |
Lrr47-RA | 1589 | CG6098-RA | 87..1378 | 12..1303 | 6445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10518058..10518773 | 588..1303 | 3580 | 100 | Plus |
2L | 23513712 | 2L | 10517421..10517998 | 12..589 | 2875 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:59:50 has no hits.
BS07513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:39 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:44 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 85..1376 | 12..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:23 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 92..1377 | 17..1302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:39 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 85..1376 | 12..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:24 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lrr47-RA | 92..1377 | 17..1302 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:24 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10517426..10517998 | 17..589 | 100 | -> | Plus |
2L | 10518060..10518772 | 590..1302 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:23 Download gff for
BS07513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10517426..10517998 | 17..589 | 100 | -> | Plus |
arm_2L | 10518060..10518772 | 590..1302 | 100 | | Plus |
BS07513.pep Sequence
Translation from 16 to 1302
> BS07513.pep
MKILCEVQVVNRATQTNKTPRPVKSTLAIGYKQSARDANGNTKKELEMVL
FSGQNKTGNRYKVKDNIHVVHTKFVLDGKTTIGFIQPPDNLLIKCDPIQL
KGFLQTLKLGMDGKDAINLRLNINAATAIPQKAQPQVRMVISKRSEYPIK
GFPRTLKSLTINNSQLVKLSFEICTLRNLTKLDVSGNKLTKIPSELGRLP
LTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDLSGNGLTYFPPPLVKFE
SLVSLNLNNNLLSRLPFAIRRMKALRKLYVCSNELESLPSAVEDLRIDLL
DVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGS
IPAVLIDLIREAPRCPCGELCYAQRKEDLFQRVVQPKFITVKNLTYSREH
QIYADVVLCDSRCSASAELKLLFNIIFS*
BS07513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lrr47-PB | 428 | CG6098-PB | 1..428 | 1..428 | 2209 | 100 | Plus |
Lrr47-PA | 428 | CG6098-PA | 1..428 | 1..428 | 2209 | 100 | Plus |
CG32687-PB | 377 | CG32687-PB | 23..224 | 120..296 | 164 | 27.2 | Plus |
CG32687-PA | 377 | CG32687-PA | 23..224 | 120..296 | 164 | 27.2 | Plus |
scrib-PC | 1247 | CG43398-PC | 192..329 | 148..289 | 162 | 37.1 | Plus |