Clone BS07513 Report

Search the DGRC for BS07513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptLrr47-RA
Protein status:BS07513.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07513.3prime Sequence

925 bp (844 high quality bases) assembled on 2006-01-06

> BS07513.3prime
ATGGTCTAGAAAGCTTTCAGGAAAAGATTATATTGAAGAGCAACTTCAGT
TCAGCAGATGCACTGCACCTAGAGTCACAGAGGACCACATCCGCGTAGAT
CTGATGCTCACGACTGTATGTGAGGTTCTTAACGGTGATGAATTTCGGCT
GAACAACGCGCTGGAAGAGGTCCTCCTTGCGCTGGGCATAGCAGAGCTCG
CCGCACGGGCATCTGGGAGCCTCCCTTATCAGATCTATTAGCACAGCGGG
AATAGAGCCCGCGGACAAGGGCAGCATATACTTATCCACAGCTCGAGCTC
CCAAAAGCCACAAAGGTTGCGGCGAATTAGATGCCGCCTTTTGCAGATAC
ATTTGCTGCGCGGCATCTGCATTGAATTCCTTGAAGCAATTGCCCCACAC
ATCCAACAGGTCGATCCGTAGATCCTCGACAGCAGAGGGCAGGGACTCTA
GTTCGTTGCTGCACACATAAAGTTTACGCAGTGCTTTCATCCGGCGAATG
GCAAAGGGCAGCCGACTCAGCAGATTGTTGTTGAGATTCAGCGATACAAG
CGACTCGAATTTAACCAGCGGAGGTGGAAAGTAAGTCAGCCCGTTGCCCG
ACAGATCCAGCTCGCCGAGCGACTGACAGAGCTTAGTGCCCCGCAGCCAG
CACCAGTCATTCTGAGTACCCAGTAAGTTGTTGCCCAGGTGCAGCGAGGT
GAGCGGAAGACGACCCAGCTCCGAGGGAATCTTGGTCAGCTTGTTACCGC
TGACATCCAGCTTTGTGAGGTTGCGCAGGGTGCATATCTCGAAGCTCAGC
TTCACTAGCTGGCTGTTGTTGATGGTCAGCGATTTGAGGGTGCGCGGAAA
TCCCTTGATGGGATACTCGCTCCGCTTGCTGATTACCATGCGCACCTGGG
GCTGTGCCTTCTGCGGGAATGCCGT

BS07513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6098-PA 1287 Lrr47-RA 388..1287 916..17 4500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 470..1378 925..17 4515 99.8 Minus
Lrr47-RA 1589 CG6098-RA 470..1378 925..17 4515 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518773 732..17 3580 100 Minus
2L 23513712 2L 10517804..10517998 925..731 945 99 Minus
Blast to na_te.dros performed on 2015-02-08 15:08:29 has no hits.

BS07513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:58 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-PA 379..1287 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:46 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6098-PA 379..1287 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:48 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 470..1378 17..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:55 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 470..1378 17..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:55 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10517804..10517998 731..925 98 -> Minus
2L 10518060..10518773 17..730 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:48 Download gff for BS07513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517804..10517998 731..925 98 -> Minus
arm_2L 10518060..10518773 17..730 100   Minus

BS07513.5prime Sequence

934 bp (779 high quality bases) assembled on 2006-01-06

> BS07513.5prime
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAAATGC

BS07513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6098-PA 1287 Lrr47-RA 1..914 17..930 4570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 87..1009 12..934 4585 99.8 Plus
Lrr47-RA 1589 CG6098-RA 87..1009 12..934 4585 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10517421..10517998 12..589 2875 99.8 Plus
2L 23513712 2L 10518058..10518404 588..934 1720 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 00:20:41 has no hits.

BS07513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:14:59 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-PA 1..918 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:48 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6098-PA 1..918 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:12 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 87..1009 12..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:56 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 87..1009 12..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:56 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10517421..10517998 12..589 99 -> Plus
2L 10518060..10518404 590..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:12 Download gff for BS07513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517421..10517998 12..589 99 -> Plus
arm_2L 10518060..10518404 590..934 99   Plus

BS07513.complete Sequence

1319 bp (1319 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635892

> BS07513.complete
GAAGTTATCAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATC
GCGCCACCCAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCC
ATTGGCTACAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGA
GCTGGAAATGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACA
AGGTCAAGGATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGG
AAGACCACCATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTG
CGATCCTATCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGG
ATGGCAAGGACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCA
ATTCCGCAGAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAG
CGAGTATCCCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCA
ACAACAGCCAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAAC
CTCACAAAGCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGA
GCTGGGTCGTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGG
GTACTCAGAATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCG
CTCGGCGAGCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCC
GCTGGTTAAATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGC
TGAGTCGGCTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTT
TATGTGTGCAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCGAGGATCT
ACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAATG
CAGATGCCGCGCAGCAAATGTATCTGCAAAAGGCGGCATCTAATTCGCCG
CAACCTTTGTGGCTTTTGGGAGCTCGAGCTGTGGATAAGTATATGCTGCC
CTTGTCCGCGGGCTCTATTCCCGCTGTGCTAATAGATCTGATAAGGGAGG
CTCCCAGATGCCCGTGCGGCGAGCTCTGCTATGCCCAGCGCAAGGAGGAC
CTCTTCCAGCGCGTTGTTCAGCCGAAATTCATCACCGTTAAGAACCTCAC
ATACAGTCGTGAGCATCAGATCTACGCGGATGTGGTCCTCTGTGACTCTA
GGTGCAGTGCATCTGCTGAACTGAAGTTGCTCTTCAATATAATCTTTTCC
TGAAAGCTTTCTAGACCAT

BS07513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1287 CG6098-PB 1..1287 17..1303 6435 100 Plus
Lrr47-RA 1287 CG6098-PA 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-RB 1874 CG6098-RB 87..1378 12..1303 6445 99.9 Plus
Lrr47-RA 1589 CG6098-RA 87..1378 12..1303 6445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10518058..10518773 588..1303 3580 100 Plus
2L 23513712 2L 10517421..10517998 12..589 2875 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 19:59:50 has no hits.

BS07513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:39 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 1..1287 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:44 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 85..1376 12..1303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:23 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 92..1377 17..1302 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:39 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 85..1376 12..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:24 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
Lrr47-RA 92..1377 17..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:24 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10517426..10517998 17..589 100 -> Plus
2L 10518060..10518772 590..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:23 Download gff for BS07513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10517426..10517998 17..589 100 -> Plus
arm_2L 10518060..10518772 590..1302 100   Plus

BS07513.pep Sequence

Translation from 16 to 1302

> BS07513.pep
MKILCEVQVVNRATQTNKTPRPVKSTLAIGYKQSARDANGNTKKELEMVL
FSGQNKTGNRYKVKDNIHVVHTKFVLDGKTTIGFIQPPDNLLIKCDPIQL
KGFLQTLKLGMDGKDAINLRLNINAATAIPQKAQPQVRMVISKRSEYPIK
GFPRTLKSLTINNSQLVKLSFEICTLRNLTKLDVSGNKLTKIPSELGRLP
LTSLHLGNNLLGTQNDWCWLRGTKLCQSLGELDLSGNGLTYFPPPLVKFE
SLVSLNLNNNLLSRLPFAIRRMKALRKLYVCSNELESLPSAVEDLRIDLL
DVWGNCFKEFNADAAQQMYLQKAASNSPQPLWLLGARAVDKYMLPLSAGS
IPAVLIDLIREAPRCPCGELCYAQRKEDLFQRVVQPKFITVKNLTYSREH
QIYADVVLCDSRCSASAELKLLFNIIFS*

BS07513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Lrr47-PB 428 CG6098-PB 1..428 1..428 2209 100 Plus
Lrr47-PA 428 CG6098-PA 1..428 1..428 2209 100 Plus
CG32687-PB 377 CG32687-PB 23..224 120..296 164 27.2 Plus
CG32687-PA 377 CG32687-PA 23..224 120..296 164 27.2 Plus
scrib-PC 1247 CG43398-PC 192..329 148..289 162 37.1 Plus