Clone Sequence Records
BS07517.3prime Sequence
914 bp (849 high quality bases) assembled on 2006-01-06
> BS07517.3prime
ATGGTCTAGAAAGCTTCTATGTCCCCTTCGAGGAATTGGTGCTGCCCAGC
GTGGGGGCGATGGGCGTGGTTGGAGAGTCAACCGCCTCCACTGCATCTCC
ATGTTTGAGCCAATATGGCGCCAACCGCAGCATGAGAATGGCGCCCAGCG
GGGCGGTGAATATAATCGCCAGCACCGAGATGATGAGCAAATTCCCGGCC
AGCGCAAGCTGTTCCGGACTGGCCACGCTGGCAGCACGTGCCATGTCCAA
AGCCACTGGACCCAAGGCGGCTTGGACAGTTGCTTTGGGAAAACCGGAAA
TTGTAATGTAGGCACGTTCCTTTCTCGACAGATTTCCGCCATATGTGGAT
AAATATGCAAAAGCCAGGCGAAACAAACTTCCGACGAGCACCAACAATGC
GCCATAACCGATTACATGGCCCTGCAGCACGTTGAAATTAATTTCCTTGC
CAATGAGCGCAAACGAGACGGGCTTGAGGAACTTCCACATGAGGTCCAGT
CGCTTGGGCACACTCGCAATTTGCTGGGCCTGCAGCTGCTGGGGCGTCAG
TCTGGTCTCCTCCCGTCGCCAGCCAATCCTCGCAATAAAGGCGGTCGTTA
CACAACCCAGGGCTCCGGCCGACGTATAACCGATGACGCGGCTGCCCATC
ACGGCGATGGTTCCGCCCAAGATGGTGAGTACGAAGCGGAGGCCATTTGC
GTACGTCGCGTTCCGGGATGGCAAGTACTGGAGCATCGAGCCGTAGAGAT
AGCCAAAAACGAGTCCAATCCCGATGCCAATGGGACCCTGCAGCACTTGC
TGGGTAAGCGAAGTCGTTGAGAATATTACGCTGATTATCACGCCAAACAT
GAAGATGGCTACCACATCGTTGCATGTGGTCATGGCATAGATGAGCGTAT
GAATGCCGCTGTTC
BS07517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31052-PA | 1755 | CG31052-RA | 858..1755 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 1596..2493 | 914..17 | 4490 | 100 | Minus |
Nha2-RA | 2162 | CG43442-RA | 1133..2030 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22981591..22981845 | 17..271 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 22983873..22984068 | 512..707 | 965 | 99.5 | Plus |
3R | 32079331 | 3R | 22983024..22983167 | 374..517 | 720 | 100 | Plus |
3R | 32079331 | 3R | 22986113..22986219 | 707..813 | 535 | 100 | Plus |
3R | 32079331 | 3R | 22982592..22982695 | 271..374 | 520 | 100 | Plus |
3R | 32079331 | 3R | 22986310..22986410 | 814..914 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:54:03 has no hits.
BS07517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:02 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 858..1755 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:52 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 858..1755 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:23 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 1133..2033 | 11..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:47 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 1133..2033 | 11..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:47 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22981588..22981845 | 11..271 | 98 | <- | Plus |
3R | 22982593..22982694 | 272..373 | 100 | <- | Plus |
3R | 22983024..22983167 | 374..517 | 100 | <- | Plus |
3R | 22983879..22984067 | 518..706 | 100 | <- | Plus |
3R | 22986113..22986219 | 707..813 | 100 | <- | Plus |
3R | 22986310..22986410 | 814..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:23 Download gff for
BS07517.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18808746..18808889 | 374..517 | 100 | <- | Plus |
arm_3R | 18807310..18807567 | 11..271 | 98 | <- | Plus |
arm_3R | 18808315..18808416 | 272..373 | 100 | <- | Plus |
arm_3R | 18809601..18809789 | 518..706 | 100 | <- | Plus |
arm_3R | 18811835..18811941 | 707..813 | 100 | <- | Plus |
arm_3R | 18812032..18812132 | 814..914 | 100 | | Plus |
BS07517.5prime Sequence
999 bp (795 high quality bases) assembled on 2006-01-06
> BS07517.5prime
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAAGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGAACACATGCAACGATGTGGTAGGCATCTTTCATGTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTAACCCAGCAAGTGCTGCA
BS07517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31052-PA | 1755 | CG31052-RA | 1..920 | 17..936 | 4525 | 99.6 | Plus |
CG31052-PA | 1755 | CG31052-RA | 926..983 | 942..999 | 265 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 737..1721 | 15..999 | 4820 | 99.4 | Plus |
Nha2-RA | 2162 | CG43442-RA | 274..1258 | 15..999 | 4820 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22991135..22991449 | 329..15 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 22986803..22987092 | 616..327 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 22986563..22986747 | 798..614 | 925 | 100 | Minus |
3R | 32079331 | 3R | 22986310..22986486 | 974..798 | 765 | 95.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:13:28 has no hits.
BS07517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:03 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 1..982 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:53 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 1..982 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:22 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..1257 | 15..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:16 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..1257 | 15..998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:16 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22986310..22986485 | 799..974 | 97 | <- | Minus |
3R | 22986196..22986219 | 975..998 | 95 | <- | Minus |
3R | 22986563..22986745 | 616..798 | 100 | <- | Minus |
3R | 22986804..22987091 | 328..615 | 100 | <- | Minus |
3R | 22991137..22991449 | 15..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:22 Download gff for
BS07517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18811918..18811941 | 975..998 | 95 | <- | Minus |
arm_3R | 18812032..18812207 | 799..974 | 97 | <- | Minus |
arm_3R | 18812285..18812467 | 616..798 | 100 | <- | Minus |
arm_3R | 18816859..18817171 | 15..327 | 100 | | Minus |
arm_3R | 18812526..18812813 | 328..615 | 100 | <- | Minus |
BS07517.complete Sequence
1787 bp assembled on 2007-10-17
GenBank Submission: FJ635893
> BS07517.complete
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAAGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTTACCCAGCAAGTGCTGCAG
GGTCCCATTGGCATCGGGATTGGACTCGTTTTTGGCTATCTCTACGGCTC
GATGCTCCAGTACTTGCCATCCCGGAACGCGACGTACGCAAATGGCCTCC
GCTTCGTACTCACCATCTTGGGCGGAACCATCGCCGTGATGGGCAGCCGC
GTCATCGGTTATACGTCGGCCGGAGCCCTGGGTTGTGTAACGACCGCCTT
TATTGCGAGGATTGGCTGGCGACGGGAGGAGACCAGACTGACGCCCCAGC
AGCTGCAGGCCCAGCAAATTGCGAGTGTGCCCAAGCGACTGGACCTCATG
TGGAAGTTCCTCAAGCCCGTCTCGTTTGCGCTCATTGGCAAGGAAATTAA
TTTCAACGTGCTGCAGGGCCATGTAATCGGTTATGGCGCATTGTTGGTGC
TCGTCGGAAGTTTGTTTCGCCTGGCTTTTGCATATTTATCCACATATGGC
GGAAATCTGTCGAGAAAGGAACGTGCCTACATTACAATTTCCGGTTTTCC
CAAAGCAACTGTCCAAGCCGCCTTGGGTCCAGTGGCTTTGGACATGGCAC
GTGCTGCCAGCGTGGCCAGTCCGGAACAGCTTGCGCTGGCCGGGAATTTG
CTCATCATCTCGGTGCTGGCGATTATATTCACCGCCCCGCTGGGCGCCAT
TCTCATGCTGCGGTTGGCGCCATATTGGCTCAAACATGGAGATGCAGTGG
AGGCGGTTGACTCTCCAACCACGCCCATCGCCCCCACGCTGGGCAGCACC
AATTCCTCGAAGGGGACATAGAAGCTTTCTAGACCAT
BS07517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2145 | CG43442-PB | 389..2145 | 15..1771 | 8770 | 99.9 | Plus |
Nha2-RA | 1755 | CG43442-PA | 1..1755 | 17..1771 | 8760 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 737..2493 | 15..1771 | 8770 | 99.9 | Plus |
Nha2-RA | 2162 | CG43442-RA | 274..2030 | 15..1771 | 8770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22991135..22991449 | 329..15 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 22986803..22987092 | 616..327 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 22981591..22981845 | 1771..1517 | 1275 | 100 | Minus |
3R | 32079331 | 3R | 22983873..22984068 | 1276..1081 | 965 | 99.5 | Minus |
3R | 32079331 | 3R | 22986563..22986747 | 798..614 | 925 | 100 | Minus |
3R | 32079331 | 3R | 22986310..22986486 | 974..798 | 870 | 99.4 | Minus |
3R | 32079331 | 3R | 22983024..22983167 | 1414..1271 | 720 | 100 | Minus |
3R | 32079331 | 3R | 22986113..22986219 | 1081..975 | 535 | 100 | Minus |
3R | 32079331 | 3R | 22982592..22982695 | 1517..1414 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:09 has no hits.
BS07517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:42 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango12-RA | 1..1755 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:11 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..2033 | 15..1777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:38 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 276..2030 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:11 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango12-RA | 276..2030 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:24 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 276..2030 | 17..1771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:24 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22986310..22986485 | 799..974 | 99 | <- | Minus |
3R | 22982593..22982694 | 1415..1516 | 100 | <- | Minus |
3R | 22983024..22983167 | 1271..1414 | 100 | <- | Minus |
3R | 22983879..22984067 | 1082..1270 | 100 | <- | Minus |
3R | 22986113..22986219 | 975..1081 | 100 | <- | Minus |
3R | 22986563..22986745 | 616..798 | 100 | <- | Minus |
3R | 22986804..22987091 | 328..615 | 100 | <- | Minus |
3R | 22981591..22981845 | 1517..1771 | 100 | <- | Minus |
3R | 22991137..22991447 | 17..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:38 Download gff for
BS07517.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18807313..18807567 | 1517..1771 | 100 | <- | Minus |
arm_3R | 18808315..18808416 | 1415..1516 | 100 | <- | Minus |
arm_3R | 18808746..18808889 | 1271..1414 | 100 | <- | Minus |
arm_3R | 18809601..18809789 | 1082..1270 | 100 | <- | Minus |
arm_3R | 18811835..18811941 | 975..1081 | 100 | <- | Minus |
arm_3R | 18812032..18812207 | 799..974 | 99 | <- | Minus |
arm_3R | 18812285..18812467 | 616..798 | 100 | <- | Minus |
arm_3R | 18812526..18812813 | 328..615 | 100 | <- | Minus |
arm_3R | 18816859..18817169 | 17..327 | 100 | | Minus |
BS07517.pep Sequence
Translation from 16 to 1770
> BS07517.pep
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGT*
BS07517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-PB | 714 | CG43442-PB | 131..714 | 1..584 | 2966 | 100 | Plus |
Nha2-PA | 584 | CG43442-PA | 1..584 | 1..584 | 2966 | 100 | Plus |
Nha1-PB | 708 | CG10806-PB | 216..638 | 116..547 | 661 | 32.8 | Plus |
Nha1-PA | 715 | CG10806-PA | 223..645 | 116..547 | 661 | 32.8 | Plus |