Clone BS07517 Report

Search the DGRC for BS07517

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptNha2-RA
Protein status:BS07517.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07517.3prime Sequence

914 bp (849 high quality bases) assembled on 2006-01-06

> BS07517.3prime
ATGGTCTAGAAAGCTTCTATGTCCCCTTCGAGGAATTGGTGCTGCCCAGC
GTGGGGGCGATGGGCGTGGTTGGAGAGTCAACCGCCTCCACTGCATCTCC
ATGTTTGAGCCAATATGGCGCCAACCGCAGCATGAGAATGGCGCCCAGCG
GGGCGGTGAATATAATCGCCAGCACCGAGATGATGAGCAAATTCCCGGCC
AGCGCAAGCTGTTCCGGACTGGCCACGCTGGCAGCACGTGCCATGTCCAA
AGCCACTGGACCCAAGGCGGCTTGGACAGTTGCTTTGGGAAAACCGGAAA
TTGTAATGTAGGCACGTTCCTTTCTCGACAGATTTCCGCCATATGTGGAT
AAATATGCAAAAGCCAGGCGAAACAAACTTCCGACGAGCACCAACAATGC
GCCATAACCGATTACATGGCCCTGCAGCACGTTGAAATTAATTTCCTTGC
CAATGAGCGCAAACGAGACGGGCTTGAGGAACTTCCACATGAGGTCCAGT
CGCTTGGGCACACTCGCAATTTGCTGGGCCTGCAGCTGCTGGGGCGTCAG
TCTGGTCTCCTCCCGTCGCCAGCCAATCCTCGCAATAAAGGCGGTCGTTA
CACAACCCAGGGCTCCGGCCGACGTATAACCGATGACGCGGCTGCCCATC
ACGGCGATGGTTCCGCCCAAGATGGTGAGTACGAAGCGGAGGCCATTTGC
GTACGTCGCGTTCCGGGATGGCAAGTACTGGAGCATCGAGCCGTAGAGAT
AGCCAAAAACGAGTCCAATCCCGATGCCAATGGGACCCTGCAGCACTTGC
TGGGTAAGCGAAGTCGTTGAGAATATTACGCTGATTATCACGCCAAACAT
GAAGATGGCTACCACATCGTTGCATGTGGTCATGGCATAGATGAGCGTAT
GAATGCCGCTGTTC

BS07517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31052-PA 1755 CG31052-RA 858..1755 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 1596..2493 914..17 4490 100 Minus
Nha2-RA 2162 CG43442-RA 1133..2030 914..17 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22981591..22981845 17..271 1275 100 Plus
3R 32079331 3R 22983873..22984068 512..707 965 99.5 Plus
3R 32079331 3R 22983024..22983167 374..517 720 100 Plus
3R 32079331 3R 22986113..22986219 707..813 535 100 Plus
3R 32079331 3R 22982592..22982695 271..374 520 100 Plus
3R 32079331 3R 22986310..22986410 814..914 505 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:54:03 has no hits.

BS07517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:02 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 858..1755 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:52 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 858..1755 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:23 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1133..2033 11..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:47 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1133..2033 11..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:47 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22981588..22981845 11..271 98 <- Plus
3R 22982593..22982694 272..373 100 <- Plus
3R 22983024..22983167 374..517 100 <- Plus
3R 22983879..22984067 518..706 100 <- Plus
3R 22986113..22986219 707..813 100 <- Plus
3R 22986310..22986410 814..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:23 Download gff for BS07517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18808746..18808889 374..517 100 <- Plus
arm_3R 18807310..18807567 11..271 98 <- Plus
arm_3R 18808315..18808416 272..373 100 <- Plus
arm_3R 18809601..18809789 518..706 100 <- Plus
arm_3R 18811835..18811941 707..813 100 <- Plus
arm_3R 18812032..18812132 814..914 100   Plus

BS07517.5prime Sequence

999 bp (795 high quality bases) assembled on 2006-01-06

> BS07517.5prime
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAAGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGAACACATGCAACGATGTGGTAGGCATCTTTCATGTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTAACCCAGCAAGTGCTGCA

BS07517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31052-PA 1755 CG31052-RA 1..920 17..936 4525 99.6 Plus
CG31052-PA 1755 CG31052-RA 926..983 942..999 265 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 737..1721 15..999 4820 99.4 Plus
Nha2-RA 2162 CG43442-RA 274..1258 15..999 4820 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22991135..22991449 329..15 1575 100 Minus
3R 32079331 3R 22986803..22987092 616..327 1450 100 Minus
3R 32079331 3R 22986563..22986747 798..614 925 100 Minus
3R 32079331 3R 22986310..22986486 974..798 765 95.5 Minus
Blast to na_te.dros performed on 2015-02-10 04:13:28 has no hits.

BS07517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:03 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 1..982 17..998 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:53 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 1..982 17..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:22 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..1257 15..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:16 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..1257 15..998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:16 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22986310..22986485 799..974 97 <- Minus
3R 22986196..22986219 975..998 95 <- Minus
3R 22986563..22986745 616..798 100 <- Minus
3R 22986804..22987091 328..615 100 <- Minus
3R 22991137..22991449 15..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:22 Download gff for BS07517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18811918..18811941 975..998 95 <- Minus
arm_3R 18812032..18812207 799..974 97 <- Minus
arm_3R 18812285..18812467 616..798 100 <- Minus
arm_3R 18816859..18817171 15..327 100   Minus
arm_3R 18812526..18812813 328..615 100 <- Minus

BS07517.complete Sequence

1787 bp assembled on 2007-10-17

GenBank Submission: FJ635893

> BS07517.complete
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAAGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTTACCCAGCAAGTGCTGCAG
GGTCCCATTGGCATCGGGATTGGACTCGTTTTTGGCTATCTCTACGGCTC
GATGCTCCAGTACTTGCCATCCCGGAACGCGACGTACGCAAATGGCCTCC
GCTTCGTACTCACCATCTTGGGCGGAACCATCGCCGTGATGGGCAGCCGC
GTCATCGGTTATACGTCGGCCGGAGCCCTGGGTTGTGTAACGACCGCCTT
TATTGCGAGGATTGGCTGGCGACGGGAGGAGACCAGACTGACGCCCCAGC
AGCTGCAGGCCCAGCAAATTGCGAGTGTGCCCAAGCGACTGGACCTCATG
TGGAAGTTCCTCAAGCCCGTCTCGTTTGCGCTCATTGGCAAGGAAATTAA
TTTCAACGTGCTGCAGGGCCATGTAATCGGTTATGGCGCATTGTTGGTGC
TCGTCGGAAGTTTGTTTCGCCTGGCTTTTGCATATTTATCCACATATGGC
GGAAATCTGTCGAGAAAGGAACGTGCCTACATTACAATTTCCGGTTTTCC
CAAAGCAACTGTCCAAGCCGCCTTGGGTCCAGTGGCTTTGGACATGGCAC
GTGCTGCCAGCGTGGCCAGTCCGGAACAGCTTGCGCTGGCCGGGAATTTG
CTCATCATCTCGGTGCTGGCGATTATATTCACCGCCCCGCTGGGCGCCAT
TCTCATGCTGCGGTTGGCGCCATATTGGCTCAAACATGGAGATGCAGTGG
AGGCGGTTGACTCTCCAACCACGCCCATCGCCCCCACGCTGGGCAGCACC
AATTCCTCGAAGGGGACATAGAAGCTTTCTAGACCAT

BS07517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2145 CG43442-PB 389..2145 15..1771 8770 99.9 Plus
Nha2-RA 1755 CG43442-PA 1..1755 17..1771 8760 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 737..2493 15..1771 8770 99.9 Plus
Nha2-RA 2162 CG43442-RA 274..2030 15..1771 8770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22991135..22991449 329..15 1575 100 Minus
3R 32079331 3R 22986803..22987092 616..327 1450 100 Minus
3R 32079331 3R 22981591..22981845 1771..1517 1275 100 Minus
3R 32079331 3R 22983873..22984068 1276..1081 965 99.5 Minus
3R 32079331 3R 22986563..22986747 798..614 925 100 Minus
3R 32079331 3R 22986310..22986486 974..798 870 99.4 Minus
3R 32079331 3R 22983024..22983167 1414..1271 720 100 Minus
3R 32079331 3R 22986113..22986219 1081..975 535 100 Minus
3R 32079331 3R 22982592..22982695 1517..1414 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:26:09 has no hits.

BS07517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:42 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
Tango12-RA 1..1755 17..1771 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:11 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..2033 15..1777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:38 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 276..2030 17..1771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:11 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
Tango12-RA 276..2030 17..1771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:24 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 276..2030 17..1771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:24 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22986310..22986485 799..974 99 <- Minus
3R 22982593..22982694 1415..1516 100 <- Minus
3R 22983024..22983167 1271..1414 100 <- Minus
3R 22983879..22984067 1082..1270 100 <- Minus
3R 22986113..22986219 975..1081 100 <- Minus
3R 22986563..22986745 616..798 100 <- Minus
3R 22986804..22987091 328..615 100 <- Minus
3R 22981591..22981845 1517..1771 100 <- Minus
3R 22991137..22991447 17..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:38 Download gff for BS07517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18807313..18807567 1517..1771 100 <- Minus
arm_3R 18808315..18808416 1415..1516 100 <- Minus
arm_3R 18808746..18808889 1271..1414 100 <- Minus
arm_3R 18809601..18809789 1082..1270 100 <- Minus
arm_3R 18811835..18811941 975..1081 100 <- Minus
arm_3R 18812032..18812207 799..974 99 <- Minus
arm_3R 18812285..18812467 616..798 100 <- Minus
arm_3R 18812526..18812813 328..615 100 <- Minus
arm_3R 18816859..18817169 17..327 100   Minus

BS07517.pep Sequence

Translation from 16 to 1770

> BS07517.pep
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGT*

BS07517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-PB 714 CG43442-PB 131..714 1..584 2966 100 Plus
Nha2-PA 584 CG43442-PA 1..584 1..584 2966 100 Plus
Nha1-PB 708 CG10806-PB 216..638 116..547 661 32.8 Plus
Nha1-PA 715 CG10806-PA 223..645 116..547 661 32.8 Plus