Clone Sequence Records
BS07519.3prime Sequence
949 bp (810 high quality bases) assembled on 2006-01-06
> BS07519.3prime
ATGGTCTAGAAAGCTTCTAATGGTGTTTCCTCAGGGGGCGCGGCAGGCGG
CGGGTGCGCAGACGGCGACGTCGGGACAACGACTTCGCTGCCGGCGTCGC
ATTTGCATTTCCATATGCATTTCCACTTGCATTTTCATTCGCATTTGCAT
AGGCATTTTCATAGCCATTGCCATTTTCATCAATTTTCACAGCGCTTTCT
TCGGGCTTTGCTGCTTCAGCGGATTCTTCAGCAGCGTCTACCTCGCCTTC
TTCCTTTTCATCGTCCTCCTCATCTTCTTCCTCCTCGTCGTCTTCATCTT
CCTCTCCTTCTTCATCCTCCCCATCTTCTTCTTCTTCGTTATCTTCATCT
TCTTCAGCGGCTGTGTCATTTGGATTGACCTTTTCTTCATGACTTGCCTT
CACCTCTTTCTCCGGCTCTATCTCCTCTTTCTGCACGCCCTCTTCGGACT
TTTCTTCCGCTCCCTCTTCCTGTTTCTTCTCCTCCTTCTTCACCTGGCTT
GGGGGTTCCTTCACCCGGTTTTTTTTCTCCACCTCATCATCATCGTCCAC
GTTTATCTCATTATCACTATCATTTTCCATTTCAACAGCCACTGTTGTCG
AGTCTTCTTCGTCGTCTTCTGCCTCCCCTTCTTCAGATGTCTCGCCCTCT
TTCTCTGGCTCTTCTACTGTCTTCTCACCCTCTGCTTCTACTGTCTTTTC
CCCATTGTTTGTGCCATCAATAACAATGTTTGGCTTGTTAAATGTCGTAG
CTGTTGTCGGTATTTTTGTCGTTGTTGTTGGTATTTTCGTTATTGTGGCT
GTTGTTGTTGTTGTTGTGGGCGCTTCAGTGGCTTTTATTGAATTGGTAAT
TGTTTCCATTACCTGACTTGGCCTCAGGCCACTCTCGCCATAACCATTGT
CATTGTCAGGTGTCTCTTGCTCAGACTCCGTCCCCCGTCTCTTTCTCTT
BS07519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-PA | 2280 | CG8568-RA | 1362..2280 | 935..17 | 4570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 1564..2495 | 949..17 | 4625 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17449142..17450073 | 17..949 | 4600 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:52:10 has no hits.
BS07519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:07 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-PA | 1349..2280 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:57 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-PA | 1349..2280 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:42 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 1564..2497 | 13..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:58 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 1564..2497 | 13..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:58 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17449140..17450073 | 13..949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:42 Download gff for
BS07519.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17343173..17344106 | 13..949 | 99 | | Plus |
BS07519.5prime Sequence
946 bp (783 high quality bases) assembled on 2006-01-06
> BS07519.5prime
GAAGTTATCAGTCGACATGATTCCCTGGATTTGCCTAAGCGCGGCCATTG
TGCTCATCCTGTGCCCCCTTCACACATCCTCGCGCAGCTACAGCAACGGT
CTGATCTTCTACGAACTGAAGACCCACCGACCCTACCTACCGCCCACGGT
CAGTGTGTCCAGGGGCCGAAATCTGGCCAGCGTCAAGTACTCCGAAAAGG
GGTCCATCTGGTCCACCTTTGGCCAGCCCTGCGAGTGCAGCGGACCCACC
TGCGGATGTTGCGCCGGTCTCAAGGTCGATCAGTACCGATTCGATCAGAA
AGTGTGCGCCAACGTGAGCTTCGTGCCGCATCTGGAGGAGGCCCAACTGG
AGGTCTTTCTTAATGGCAGGCCCTCCTCGAAATACGGAATCTCGGTGCGC
AATCCGGCGCCCTTCTGCATTCCCGTCATGATGGGTGTACCGATGGCCAT
GTGCGTCCAAATGACCGACGTCACAGTGGTTGGGAACAACCTAAACATGT
GCATGGACTTTGTGGTTCGGATGGCCACCACCGATCTCTTCGAGATGCAT
TTCCAGTGCATGCGAATGGGTCTGGATGGTCTGCAGTATGTGGACAAGAA
TGGCAAGCCCGTACTGCCGATGGGAGATGGTCAGAGCGACGATCCGGAGG
AGTACGAGTACGCCGAGCTGGAGGATCAACCGGAAGAGTATCCTTATCAA
GAGGATGTCAAGGAGGAGGCTCCATCCCAGGGCTATCAACCAGATAACAA
TCAGCAGCAGAAGAATACAACACTGACCACTGATCAGGTTAAAGAGGATG
AGATGGAGAAGAATCAATCAATGGGCTATCAACCTCTCATCATAAATAAT
CAAGCACAGAAGATTGAGCCTCAATTAAATCTAGAAGAATTAATCTACCA
ACCTCAAAAGAATCAAACTCTAAGCGAGCCAGCTAAACAGGATCAG
BS07519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-PA | 2280 | CG8568-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 208..1145 | 9..946 | 4660 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17450492..17451137 | 946..301 | 3230 | 100 | Minus |
| X | 23542271 | X | 17452043..17452336 | 302..9 | 1440 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:05:42 has no hits.
BS07519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:08 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:05:58 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:01 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1145 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:35 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1145 | 9..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:35 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17450492..17451135 | 303..946 | 100 | <- | Minus |
| X | 17452043..17452336 | 9..302 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:01 Download gff for
BS07519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17344525..17345168 | 303..946 | 100 | <- | Minus |
| arm_X | 17346076..17346369 | 9..302 | 99 | | Minus |
BS07519.complete Sequence
2312 bp assembled on 2008-01-03
GenBank Submission: FJ638803
> BS07519.complete
GAAGTTATCAGTCGACATGATTCCCTGGATTTGCCTAAGCGCGGCCATTG
TGCTCATCCTGTGCCCCCTTCACACATCCTCGCGCAGCTACAGCAACGGT
CTGATCTTCTACGAACTGAAGACCCACCGACCCTACCTACCGCCCACGGT
CAGTGTGTCCAGGGGCCGAAATCTGGCCAGCGTCAAGTACTCCGAAAAGG
GGTCCATCTGGTCCACCTTTGGCCAGCCCTGCGAGTGCAGCGGACCCACC
TGCGGATGTTGCGCCGGTCTCAAGGTCGATCAGTACCGATTCGATCAGAA
AGTGTGCGCCAACGTGAGCTTCGTGCCGCATCTGGAGGAGGCCCAACTGG
AGGTCTTTCTTAATGGCAGGCCCTCCTCGAAATACGGAATCTCGGTGCGC
AATCCGGCGCCCTTCTGCATTCCCGTCATGATGGGTGTACCGATGGCCAT
GTGCGTCCAAATGACCGACGTCACAGTGGTTGGGAACAACCTAAACATGT
GCATGGACTTTGTGGTTCGGATGGCCACCACCGATCTCTTCGAGATGCAT
TTCCAGTGCATGCGAATGGGTCTGGATGGTCTGCAGTATGTGGACAAGAA
TGGCAAGCCCGTACTGCCGATGGGAGATGGTCAGAGCGACGATCCGGAGG
AGTACGAGTACGCCGAGCTGGAGGATCAACCGGAAGAGTATCCTTATCAA
GAGGATGTCAAGGAGGAGGCTCCATCCCAGGGCTATCAACCAGATAACAA
TCAGCAGCAGAAGAATACAACACTGACCACTGATCAGGTTAAAGAGGATG
AGATGGAGAAGAATCAATCAATGGGCTATCAACCTCTCATCATAAATAAT
CAAGCACAGAAGATTGAGCCTCAATTAAATCTAGAAGAATTAATCTACCA
ACCTCAAAAGAATCAAACTCTAAGCGAGCCAGCTAAACAGGATCAGGTAG
ATAAGGAGGAGGATACACAAAATGAAGAATCAGGTTATCAAACACTAGGT
CAAATTAAGGTTGAAGACCAAAAAGAAGAAAAGCCTGCAGAAAAGCAGCC
AGAGATTCAACAGCCTTCAGAAAATACACTGGATGAAGATGAACCGATGG
GCTATCAACCCCCGATGGCGATGGTTCCCCAAAAAGTTCCAGAAGAACAG
CCTCTAGCTGAGGATCTTCAAGAAGAGGAGGAGAAGACTTTAGAGAGCGA
GGGAGATCACCAGGAGGACGAAGAACTTGAAGATGTGGAGCCCCTGCCAA
TCGAAAGTGAAATGCTAATGGCCAGCGATCAGGCAGAAGAAGCACCTTTC
GAAGAAGAGGCCGAAGAAATGCCAGCTGAAGACGCAAAAGAGACGGCAGC
AGAGGCGGCGGAGAAAGAGAAAGAGACGGGGACGGAGTCTGAGCAAGAGA
CACCTGACAATGACAATGGTTATGGCGAGAGTGGCCTGAGGCCAAGTCAG
GTAATTGAAACAATTACCAATTCAATAAAAGCCACTGAAGCGCCCACAAC
AACAACAACAACAGCCACAATAACGAAAATACCAACAACAACGACAAAAA
TACCGACAACAGCTACGACATTTAACAAGCCAAACATTGTTATTGATGGC
ACAAACAATGGGGAAAAGACAGTAGAAGCAGAGGGTGAGAAGACAGTAGA
AGAGCCAGAGAAAGAGGGCGAGACATCTGAAGAAGGGGAGGCAGAAGACG
ACGAAGAAGACTCGACAACAGTGGCTGTTGAAATGGAAAATGATAGTGAT
AATGAGATAAACGTGGACGATGATGATGAGGTGGAGAAAAAAAACCGGGT
GAAGGAACCCCCAAGCCAGGTGAAGAAGGAGGAGAAGAAACAGGAAGAGG
GAGCGGAAGAAAAGTCCGAAGAGGGCGTGCAGAAAGAGGAGATAGAGCCG
GAGAAAGAGGTGAAGGCAAGTCATGAAGAAAAGGTCAATCCAAATGACAC
AGCCGCTGAAGAAGATGAAGATAACGAAGAAGAAGAAGATGGGGAGGATG
AAGAAGGAGAGGAAGATGAAGACGACGAGGAGGAAGAAGATGAGGAGGAC
GATGAAAAGGAAGAAGGCGAGGTAGACGCTGCTGAAGAATCCGCTGAAGC
AGCAAAGCCCGAAGAAAGCGCTGTGAAAATTGATGAAAATGGCAATGGCT
ATGAAAATGCCTATGCAAATGCGAATGAAAATGCAAGTGGAAATGCATAT
GGAAATGCAAATGCGACGCCGGCAGCGAAGTCGTTGTCCCGACGTCGCCG
TCTGCGCACCCGCCGCCTGCCGCGCCCCCTGAGGAAACACCATTAGAAGC
TTTCTAGACCAT
BS07519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2280 | CG8568-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 208..2495 | 9..2296 | 11410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17449142..17451137 | 2296..301 | 9980 | 100 | Minus |
| X | 23542271 | X | 17452043..17452336 | 302..9 | 1440 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:33:23 has no hits.
BS07519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:44 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 1..2280 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:49 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 216..2495 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:10 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 216..2495 | 17..2296 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:44 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..2497 | 9..2300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:39 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 216..2495 | 17..2296 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:39 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17449142..17451135 | 303..2296 | 100 | <- | Minus |
| X | 17452043..17452328 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:10 Download gff for
BS07519.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17343175..17345168 | 303..2296 | 100 | <- | Minus |
| arm_X | 17346076..17346361 | 17..302 | 100 | | Minus |
BS07519.pep Sequence
Translation from 16 to 2295
> BS07519.pep
MIPWICLSAAIVLILCPLHTSSRSYSNGLIFYELKTHRPYLPPTVSVSRG
RNLASVKYSEKGSIWSTFGQPCECSGPTCGCCAGLKVDQYRFDQKVCANV
SFVPHLEEAQLEVFLNGRPSSKYGISVRNPAPFCIPVMMGVPMAMCVQMT
DVTVVGNNLNMCMDFVVRMATTDLFEMHFQCMRMGLDGLQYVDKNGKPVL
PMGDGQSDDPEEYEYAELEDQPEEYPYQEDVKEEAPSQGYQPDNNQQQKN
TTLTTDQVKEDEMEKNQSMGYQPLIINNQAQKIEPQLNLEELIYQPQKNQ
TLSEPAKQDQVDKEEDTQNEESGYQTLGQIKVEDQKEEKPAEKQPEIQQP
SENTLDEDEPMGYQPPMAMVPQKVPEEQPLAEDLQEEEEKTLESEGDHQE
DEELEDVEPLPIESEMLMASDQAEEAPFEEEAEEMPAEDAKETAAEAAEK
EKETGTESEQETPDNDNGYGESGLRPSQVIETITNSIKATEAPTTTTTTA
TITKIPTTTTKIPTTATTFNKPNIVIDGTNNGEKTVEAEGEKTVEEPEKE
GETSEEGEAEDDEEDSTTVAVEMENDSDNEINVDDDDEVEKKNRVKEPPS
QVKKEEKKQEEGAEEKSEEGVQKEEIEPEKEVKASHEEKVNPNDTAAEED
EDNEEEEDGEDEEGEEDEDDEEEEDEEDDEKEEGEVDAAEESAEAAKPEE
SAVKIDENGNGYENAYANANENASGNAYGNANATPAAKSLSRRRRLRTRR
LPRPLRKHH*
BS07519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-PA | 759 | CG8568-PA | 1..759 | 1..759 | 3971 | 100 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 119..484 | 307..694 | 253 | 26.2 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 266..749 | 206..723 | 239 | 23.7 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 286..804 | 208..702 | 239 | 22.5 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 266..749 | 206..723 | 239 | 23.7 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 286..804 | 208..702 | 239 | 22.5 | Plus |
| sls-PY | 10625 | CG1915-PY | 5459..5973 | 206..704 | 230 | 24.4 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 693..1211 | 228..700 | 227 | 22.4 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 693..1211 | 228..700 | 227 | 22.4 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 117..427 | 415..713 | 226 | 26.9 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 495..989 | 199..706 | 208 | 20.9 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 495..989 | 199..706 | 208 | 20.9 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 306..963 | 211..740 | 204 | 20.3 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 306..963 | 211..740 | 204 | 20.3 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 131..449 | 383..700 | 202 | 24.7 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 609..1140 | 190..708 | 195 | 22.5 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 609..1140 | 190..708 | 195 | 22.5 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 41..311 | 453..721 | 185 | 22.4 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 94..366 | 480..734 | 182 | 26.3 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 207..442 | 482..707 | 177 | 24.5 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 207..442 | 482..707 | 177 | 24.5 | Plus |
