Clone Sequence Records
BS07526.3prime Sequence
900 bp (784 high quality bases) assembled on 2006-01-06
> BS07526.3prime
ATGGTCTAGAAAGCTTTTATGGAGAGCCCTCAAATGAATCGTACAGAAAT
CCCAAGCCTAACAGGGCCTTATCCAATTGAGGCACTTTCAGTTCTTCAGG
TTGAGGCTCCAAAACCAGCAGTTGGTCGATGCTATAGCGCTGCACGATCT
TTCCATTTTTATTGCACAGGTTGTTCAATGGTACCGGCGGATTTCGACGG
ATTGTCCAGTTTTGAAGGGGTCGGAAGTGTGTGAGATTTCCCCTGCGCTT
CTCCGTATCGCATTGTTTAGCAGGTGGACTAAAGCGATCGCACAGACGAA
TAACTCCCGACGGAGATATGTTCACCACATTGGAGGTCACCAATGGTTTT
GGTGGCACAGCAGATTGCGAAGGGTTCGCATCCTGAACACCCATCTGATT
TTTCTTTTCAGCTTCCATCTTAGCCAAATGTTTGGCACGACATCGCTCGT
CCCATTCCTTGGTGGTTGGTATGTACCTCTTTTTGGTAACTATGGGCACT
TCATTTGTCTTCTCCGGATGCTGAGGCATAGGTTTAGCAGGTTCATTAGG
CTTATTAGATTCATTGGGTGCATTATCAAAACAAATCTTCTCCTCCTTGA
GCTGCTCTTTCTTCACTTGCGACTGCTTGCTGTTTGTCATTTCGCGAAGG
ATACGCTCGATACGCTCTCTCTTCGCTGCCCTTAAACGGTCCACTCTGAT
CCTTTCATTTGGCGTGAACTTTATTGGAGATCGTGAGATATTTATAATTG
GCGGCACGTTCTTTGAGTTTTCATTGCCCTCCGTGGGGGGCATGACAGGA
TCCCTCATTCTACGCTGTTCGGCCAACTTTAAGGCTTCCACAGCGATTTT
TCTATCGTGTTCGCGGCGCCTTTCCTCGTGATCAATGCGATTTCCAGCTG
BS07526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-PA | 1269 | CG6304-RA | 386..1269 | 900..17 | 4370 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-RB | 1657 | CG6304-RB | 644..1528 | 900..16 | 4395 | 99.8 | Minus |
CG6304-RA | 1526 | CG6304-RA | 585..1469 | 900..16 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17011605..17012489 | 16..900 | 4395 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:59:53 has no hits.
BS07526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:23 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-PA | 386..1269 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:17 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-PA | 386..1269 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:19:27 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 505..1396 | 9..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:53 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 585..1476 | 9..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:53 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17011604..17012489 | 16..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:19:27 Download gff for
BS07526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17011604..17012489 | 16..900 | 99 | | Plus |
BS07526.5prime Sequence
863 bp (787 high quality bases) assembled on 2006-01-06
> BS07526.5prime
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAAGGAATGG
GACGAGCGATGTC
BS07526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-PA | 1269 | CG6304-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-RB | 1657 | CG6304-RB | 258..1105 | 16..863 | 4240 | 100 | Plus |
CG6304-RA | 1526 | CG6304-RA | 199..1046 | 16..863 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17012028..17012612 | 863..279 | 2925 | 100 | Minus |
2L | 23513712 | 2L | 17012674..17012936 | 278..16 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:14:59 has no hits.
BS07526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:24 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:19 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:58 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 115..966 | 10..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:11 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 195..1046 | 10..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:11 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17012028..17012612 | 279..863 | 100 | <- | Minus |
2L | 17012674..17012940 | 10..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:58 Download gff for
BS07526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17012028..17012612 | 279..863 | 100 | <- | Minus |
arm_2L | 17012674..17012940 | 10..278 | 98 | | Minus |
BS07526.complete Sequence
1301 bp (1301 high quality bases) assembled on 2005-12-21
> BS07526.complete
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAAGGAATGG
GACGAGCGATGTCGTGCCAAACATTTGGCTAAGATGGAAGCTGAAAAGAA
AAATCAGATGGGTGTTCAGGATGCGAACCCTTCGCAATCTGCTGTGCCAC
CAAAACCATTGGTGACCTCCAATGTGGTGAACATATCTCCGTCGGGAGTT
ATTCGTCTGTGCGATCGCTTTAGTCCACCTGCTAAACAATGCGATACGGA
GAAGCGCAGGGGAAATCTCACACACTTCCGACCCCTTCAAAACTGGACAA
TCCGTCGAAATCCGCCGGTACCATTGAACAACCTGTGCAATAAAAATGGA
AAGATCGTGCAGCGCTATAGCATCGACCAACTGCTGGTTTTGGAGCCTCA
ACCTGAAGAACTGAAAGTGCCTCAATTGGATAAGGCCCTGTTAGGCTTGG
GATTTCTGTACGATTCATTTGAGGGCTCTCCATAAAAGCTTTCTAGACCA
T
BS07526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-RB | 1269 | CG6304-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
CG6304-RA | 1269 | CG6304-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-RB | 1657 | CG6304-RB | 258..1528 | 16..1286 | 6355 | 100 | Plus |
CG6304-RA | 1526 | CG6304-RA | 199..1469 | 16..1286 | 6355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17011605..17012612 | 1286..279 | 5040 | 100 | Minus |
2L | 23513712 | 2L | 17012674..17012936 | 278..16 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:35 has no hits.
BS07526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:25 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:27 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 115..1396 | 10..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:10 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 120..1386 | 17..1283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:26 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 115..1396 | 10..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:50 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6304-RA | 200..1466 | 17..1283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:50 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17011608..17012612 | 279..1283 | 100 | <- | Minus |
2L | 17012674..17012935 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:10 Download gff for
BS07526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17011608..17012612 | 279..1283 | 100 | <- | Minus |
arm_2L | 17012674..17012935 | 17..278 | 100 | | Minus |
BS07526.pep Sequence
Translation from 16 to 1284
> BS07526.pep
MYNNIKGLHINEYQRENGDNTRKLACEGTVKLNANAQEFVPRYKREQPAK
DDAIVGNSNMSNTNNDDQKPKSNLMLPWKGFPNKSQKPSRNVDYIVLPST
KRFKKPIGQQLVENVSTTPSKVHLNDPVPAGNRIDHEERRREHDRKIAVE
ALKLAEQRRMRDPVIAPTEGNENSKNVPPIINISRSPIKFTPNERIRVDR
LRAAKRERIERILREMTNSKQSQVKKEQLKEEKICFDNAPNESNKPNEPA
KPMPQHPEKTNEVPIVTKKRYIPTTKEWDERCRAKHLAKMEAEKKNQMGV
QDANPSQSAVPPKPLVTSNVVNISPSGVIRLCDRFSPPAKQCDTEKRRGN
LTHFRPLQNWTIRRNPPVPLNNLCNKNGKIVQRYSIDQLLVLEPQPEELK
VPQLDKALLGLGFLYDSFEGSP*
BS07526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6304-PB | 422 | CG6304-PB | 1..422 | 1..422 | 2228 | 100 | Plus |
CG6304-PA | 422 | CG6304-PA | 1..422 | 1..422 | 2228 | 100 | Plus |
CG9777-PA | 413 | CG9777-PA | 76..410 | 46..409 | 320 | 30.3 | Plus |