Clone BS07526 Report

Search the DGRC for BS07526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG6304-RA
Protein status:BS07526.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07526.3prime Sequence

900 bp (784 high quality bases) assembled on 2006-01-06

> BS07526.3prime
ATGGTCTAGAAAGCTTTTATGGAGAGCCCTCAAATGAATCGTACAGAAAT
CCCAAGCCTAACAGGGCCTTATCCAATTGAGGCACTTTCAGTTCTTCAGG
TTGAGGCTCCAAAACCAGCAGTTGGTCGATGCTATAGCGCTGCACGATCT
TTCCATTTTTATTGCACAGGTTGTTCAATGGTACCGGCGGATTTCGACGG
ATTGTCCAGTTTTGAAGGGGTCGGAAGTGTGTGAGATTTCCCCTGCGCTT
CTCCGTATCGCATTGTTTAGCAGGTGGACTAAAGCGATCGCACAGACGAA
TAACTCCCGACGGAGATATGTTCACCACATTGGAGGTCACCAATGGTTTT
GGTGGCACAGCAGATTGCGAAGGGTTCGCATCCTGAACACCCATCTGATT
TTTCTTTTCAGCTTCCATCTTAGCCAAATGTTTGGCACGACATCGCTCGT
CCCATTCCTTGGTGGTTGGTATGTACCTCTTTTTGGTAACTATGGGCACT
TCATTTGTCTTCTCCGGATGCTGAGGCATAGGTTTAGCAGGTTCATTAGG
CTTATTAGATTCATTGGGTGCATTATCAAAACAAATCTTCTCCTCCTTGA
GCTGCTCTTTCTTCACTTGCGACTGCTTGCTGTTTGTCATTTCGCGAAGG
ATACGCTCGATACGCTCTCTCTTCGCTGCCCTTAAACGGTCCACTCTGAT
CCTTTCATTTGGCGTGAACTTTATTGGAGATCGTGAGATATTTATAATTG
GCGGCACGTTCTTTGAGTTTTCATTGCCCTCCGTGGGGGGCATGACAGGA
TCCCTCATTCTACGCTGTTCGGCCAACTTTAAGGCTTCCACAGCGATTTT
TCTATCGTGTTCGCGGCGCCTTTCCTCGTGATCAATGCGATTTCCAGCTG

BS07526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-PA 1269 CG6304-RA 386..1269 900..17 4370 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-RB 1657 CG6304-RB 644..1528 900..16 4395 99.8 Minus
CG6304-RA 1526 CG6304-RA 585..1469 900..16 4395 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17011605..17012489 16..900 4395 99.8 Plus
Blast to na_te.dros performed on 2015-02-01 07:59:53 has no hits.

BS07526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:23 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-PA 386..1269 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:17 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-PA 386..1269 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:19:27 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 505..1396 9..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:47:53 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 585..1476 9..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:47:53 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17011604..17012489 16..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:19:27 Download gff for BS07526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17011604..17012489 16..900 99   Plus

BS07526.5prime Sequence

863 bp (787 high quality bases) assembled on 2006-01-06

> BS07526.5prime
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAAGGAATGG
GACGAGCGATGTC

BS07526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-PA 1269 CG6304-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-RB 1657 CG6304-RB 258..1105 16..863 4240 100 Plus
CG6304-RA 1526 CG6304-RA 199..1046 16..863 4240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17012028..17012612 863..279 2925 100 Minus
2L 23513712 2L 17012674..17012936 278..16 1315 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:14:59 has no hits.

BS07526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:24 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:19 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:58 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 115..966 10..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:11 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 195..1046 10..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:11 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17012028..17012612 279..863 100 <- Minus
2L 17012674..17012940 10..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:58 Download gff for BS07526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17012028..17012612 279..863 100 <- Minus
arm_2L 17012674..17012940 10..278 98   Minus

BS07526.complete Sequence

1301 bp (1301 high quality bases) assembled on 2005-12-21

> BS07526.complete
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAAGGAATGG
GACGAGCGATGTCGTGCCAAACATTTGGCTAAGATGGAAGCTGAAAAGAA
AAATCAGATGGGTGTTCAGGATGCGAACCCTTCGCAATCTGCTGTGCCAC
CAAAACCATTGGTGACCTCCAATGTGGTGAACATATCTCCGTCGGGAGTT
ATTCGTCTGTGCGATCGCTTTAGTCCACCTGCTAAACAATGCGATACGGA
GAAGCGCAGGGGAAATCTCACACACTTCCGACCCCTTCAAAACTGGACAA
TCCGTCGAAATCCGCCGGTACCATTGAACAACCTGTGCAATAAAAATGGA
AAGATCGTGCAGCGCTATAGCATCGACCAACTGCTGGTTTTGGAGCCTCA
ACCTGAAGAACTGAAAGTGCCTCAATTGGATAAGGCCCTGTTAGGCTTGG
GATTTCTGTACGATTCATTTGAGGGCTCTCCATAAAAGCTTTCTAGACCA
T

BS07526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-RB 1269 CG6304-PB 1..1269 17..1285 6345 100 Plus
CG6304-RA 1269 CG6304-PA 1..1269 17..1285 6345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-RB 1657 CG6304-RB 258..1528 16..1286 6355 100 Plus
CG6304-RA 1526 CG6304-RA 199..1469 16..1286 6355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17011605..17012612 1286..279 5040 100 Minus
2L 23513712 2L 17012674..17012936 278..16 1315 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:05:35 has no hits.

BS07526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:25 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:27 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 115..1396 10..1293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:10 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 120..1386 17..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:26 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 115..1396 10..1293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:50 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
CG6304-RA 200..1466 17..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:50 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17011608..17012612 279..1283 100 <- Minus
2L 17012674..17012935 17..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:10 Download gff for BS07526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17011608..17012612 279..1283 100 <- Minus
arm_2L 17012674..17012935 17..278 100   Minus

BS07526.pep Sequence

Translation from 16 to 1284

> BS07526.pep
MYNNIKGLHINEYQRENGDNTRKLACEGTVKLNANAQEFVPRYKREQPAK
DDAIVGNSNMSNTNNDDQKPKSNLMLPWKGFPNKSQKPSRNVDYIVLPST
KRFKKPIGQQLVENVSTTPSKVHLNDPVPAGNRIDHEERRREHDRKIAVE
ALKLAEQRRMRDPVIAPTEGNENSKNVPPIINISRSPIKFTPNERIRVDR
LRAAKRERIERILREMTNSKQSQVKKEQLKEEKICFDNAPNESNKPNEPA
KPMPQHPEKTNEVPIVTKKRYIPTTKEWDERCRAKHLAKMEAEKKNQMGV
QDANPSQSAVPPKPLVTSNVVNISPSGVIRLCDRFSPPAKQCDTEKRRGN
LTHFRPLQNWTIRRNPPVPLNNLCNKNGKIVQRYSIDQLLVLEPQPEELK
VPQLDKALLGLGFLYDSFEGSP*

BS07526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6304-PB 422 CG6304-PB 1..422 1..422 2228 100 Plus
CG6304-PA 422 CG6304-PA 1..422 1..422 2228 100 Plus
CG9777-PA 413 CG9777-PA 76..410 46..409 320 30.3 Plus