Clone BS07527 Report

Search the DGRC for BS07527

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13604-RA
Protein status:BS07527.pep: full length peptide match
Sequenced Size:2288

Clone Sequence Records

BS07527.3prime Sequence

945 bp (859 high quality bases) assembled on 2006-01-06

> BS07527.3prime
ATGGTCTAGAAAGCTTCTAGGTGGCCGACAAGGCGTTCCACTCGAACCGC
GGATTCTTTGAGTGCGTCACCGGAAGACATTCGGGTTCAACCAGCTTCCA
GACGCCGTCCACCTGTTCCACCGTTGCCAGGCTGCAGTAGGGGATCTTGT
GGATGACTTGGCGCAATTCGTTCGTGCTGCGTGGAACTCCACCGGTCAGT
TGACGGGAACAAGTGTCCAGTGTGGTGGCATGGGCAACAACCAAAATATT
TCCAGTTGTCTGCTCCAATAGCTGGAGGATAACGTCATGGTTACGTTCAT
AAAACTGCTCGGTGGACTCCTTTAGGCGAGCAGTTAGCTCAGACGCTGGC
TGCACCGGCTCATAATCCAAATCAACGTCGAACTTGGCCTCGGTCAGCTC
GTTCTTAGTCAGCCAGTCGGGTACACCGCTCGGATACCAGGCCATCCACT
CAAACAGGCCCGGCTCCAGTTTGATTTTTTGCTTGCCCGTAAGCTTCAGC
CCCTCAAGCGCACTGGTGCAAGTCTGGATGCAGCGATACGAGGGCGAACA
GTAAACATGGTCGATCTGCACTTGAGCCTCCAGCAAAGCTTGACCAATAA
GATTGGCCTGATAGACACCCACATTTGTCAGCGGAGAATCATTCTGCCAG
CCCTCCGGACTGTTCTTCCGACGAGGCAGCGTCTTCGGCATGTTTAAATC
CTTCCTCATGTAATTTCCAAACTCATCGAAGCAATATGGAATCCATGTTC
CAAAAGTAAAGTCGACTCGCTCGCCATGCCGCATAATGTAGATCTTTCTG
TTCTTGGCATGCGAGGCGTCAAGGGATCCGGGATGCAAGGAGTGGTCCGA
GTGTACACTAAGTGTGTCATCTGGACGCGGAGGCTGGGCTGCCGGTGGTT
CCACCAGATCTCGTCCACCGGTTGCTTGGACATGGAAGTGGAGGA

BS07527.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-PA 2256 CG13604-RA 1367..2256 906..17 4450 100 Minus
CG13604-PA 2256 CG13604-RA 1327..1366 945..906 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-RE 3042 CG13604-RE 1447..2376 945..17 4610 99.8 Minus
CG13604-RD 2940 CG13604-RD 1345..2274 945..17 4610 99.8 Minus
CG13604-RC 2326 CG13604-RC 731..1660 945..17 4610 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23989771..23990461 256..945 3390 99.7 Plus
3R 32079331 3R 23989472..23989710 17..255 1195 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:48:33 has no hits.

BS07527.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:25 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-PA 1328..2256 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:20 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-PA 1328..2256 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:36 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-RC 732..1663 13..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:29 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-RC 732..1663 13..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:29 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23989469..23989710 13..255 99 <- Plus
3R 23989771..23990460 256..944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:36 Download gff for BS07527.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19815191..19815432 13..255 99 <- Plus
arm_3R 19815493..19816182 256..944 99   Plus

BS07527.5prime Sequence

883 bp (783 high quality bases) assembled on 2006-01-06

> BS07527.5prime
GAAGTTATCAGTCGACATGGCCACGCTTCCGCCGCGTAAGAGTCAGACCC
CTACGAGGATCTGCATCTCTAAGCAGCATCTGACGCCGCTCCAAACATTG
CTCCAAATGGGGTTTCCCAGGCATAGAGCGGAGAAAGCTTTGGCTTCAAC
TGGTAATCGTGGTGTCCAGATTGCCTCGGATTGGTTGCTGGCACATGTCA
ACGATGGCACCCTGGACGAGTGCGCCCCCAGGGAATATATTATATATGCT
TGTCCCACGGGTCCGTTTCTGCAGCAGCTGGAGGAGTTCTGGGCCAAGTC
GCGCCAAATGTGCGGTTGGAATGGAGCACACAACTACGTGCCTCACATAA
CCCTGGTTTCGTTTTTTAAAGCCCCCGATGAGTGCTCGCTGCAGCTGTCC
AAGGCGCTCAAACAGGTGGTGGACATGACGGGCGCCTTGTTGGATCGCCC
CCTTAAACTGGAGCCCTACATGAGTCAAAACTTCATGGGTTTTTTCGTGG
CCGAGGAGGATGCCAACTATCTGAAACGACTGGCCCTGCAGTACGTGAAG
GAGGTGTCCAACTCAATCATTAGCGATACCTATGAGCAGTTGGACGCCAT
TGTGGCCTGCTTTCCCTGGTGCGGTGCTGTCTCCTCGGGCACCCGCTGCA
TTCCGCGCAGCAGTCGATCCATCTCACTCGAGCCACACGTTAAGAGCCTG
CACCTGACGCTTGCCTACCAGTTCCCGCAGGCACAGTTTAATGCACTGAA
AGCACTCGTGGAGACCTTAGACGCCAGCTGCGCTTCAAATTGGGAACTTC
GTCTATATTCCCGCGATCCTCGGCTCGCCACCAAACAAGTTCAAAAGGTA
GTTTATCCACACAACCCGCACGAGACGGATGAA

BS07527.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-PA 2256 CG13604-RA 1..867 17..883 4310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-RE 3042 CG13604-RE 116..987 12..883 4330 99.8 Plus
CG13604-RA 3042 CG13604-RA 116..987 12..883 4330 99.8 Plus
CG13604-RD 2940 CG13604-RD 116..674 12..570 2765 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23992297..23992538 371..130 1210 100 Minus
3R 32079331 3R 23992047..23992242 566..371 980 100 Minus
3R 32079331 3R 23991083..23991255 841..669 850 99.4 Minus
3R 32079331 3R 23992683..23992801 130..12 580 99.2 Minus
3R 32079331 3R 23991774..23991875 668..567 510 100 Minus
3R 32079331 3R 23990983..23991027 883..839 225 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:05:27 has no hits.

BS07527.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:26 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:22 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:59 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 106..987 1..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:33 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 106..987 1..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:33 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23990983..23991027 839..883 100 <- Minus
3R 23991086..23991255 669..838 99 <- Minus
3R 23991774..23991875 567..668 100 <- Minus
3R 23992047..23992242 371..566 100 <- Minus
3R 23992298..23992538 130..370 100 <- Minus
3R 23992684..23992811 1..129 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:59 Download gff for BS07527.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19817496..19817597 567..668 100 <- Minus
arm_3R 19816808..19816977 669..838 99 <- Minus
arm_3R 19816705..19816749 839..883 100 <- Minus
arm_3R 19817769..19817964 371..566 100 <- Minus
arm_3R 19818020..19818260 130..370 100 <- Minus
arm_3R 19818406..19818533 1..129 96   Minus

BS07527.complete Sequence

2288 bp assembled on 2008-08-14

GenBank Submission: FJ635894

> BS07527.complete
GAAGTTATCAGTCGACATGGCCACGCTTCCGCCGCGTAAGAGTCAGACCC
CTACGAGGATCTGCATCTCTAAGCAGCATCTGACGCCGCTCCAAACATTG
CTCCAAATGGGGTTTCCCAGGCATAGAGCGGAGAAAGCTTTGGCTTCAAC
TGGTAATCGTGGTGTCCAGATTGCCTCGGATTGGTTGCTGGCACATGTCA
ACGATGGCACCCTGGACGAGTGCGCCCCCAGGGAATATATTATATATGCT
TGTCCCACGGGTCCGTTTCTGCAGCAGCTGGAGGAGTTCTGGGCCAAGTC
GCGCCAAATGTGCGGTTGGAATGGAGCACACAACTACGTGCCTCACATAA
CCCTGGTTTCGTTTTTTAAAGCCCCCGATGAGTGCTCGCTGCAGCTGTCC
AAGGCGCTCAAACAGGTGGTGGACATGACGGGCGCCTTGTTGGATCGCCC
CCTTAAACTGGAGCCCTACATGAGTCAAAACTTCATGGGTTTTTTCGTGG
CCGAGGAGGATGCCAACTATCTGAAACGACTGGCCCTGCAGTACGTGAAG
GAGGTGTCCAACTCAATCATTAGCGATACCTATGAGCAGTTGGACGCCAT
TGTGGCCTGCTTTCCCTGGTGCGGTGCTGTCTCCTCGGGCACCCGCTGCA
TTCCGCGCAGCAGTCGATCCATCTCACTCGAGCCACACGTTAAGAGCCTG
CACCTGACGCTTGCCTACCAGTTCCCGCAGGCACAGTTTAATGCACTGAA
AGCACTCGTGGAGACCTTAGACGCCAGCTGCGCTTCCAATTGGGAACTTC
GTCTATATTCCCGCGATCCTCGGCTCGCCACCAAACAAGTTCAAAAGGTA
GTTTATCCACACAACCCGCACGAGACGGATGAACTGGAGCTCCGAATCGG
CGATTACATCTATTTGAATACCGAGGTAGTAGACAGTTCCAGTGACGGTT
GGGCCGAAGGCATATCTTGGTTGACCGGAAGCACCGGTCATTTGCCCGTC
AATTACACCGAACGCACCGCAGAATCGGACGCCTGGACCCTGCATCGTGT
GGTCCAGCTCTCCAAGAGCGTAGCTTCATCATTAACTTCCGCCGAGGACT
TGGACATTGTGGACGGACGCAGTATATCAACGGAGCCCGACGATCGTCAG
AACACAGCACATCCTGATATAATTGAAGGCTCTTCGTTTGAGGAATCCGA
ACAGAGCGTGGAGAAGTATTTGAGACAGACTTTGAAGCCCTGCCTGGAAC
TACCCTCAGTGCAATTGCTAAACAGCCACAACTTGACCCATCAGCATAAC
CCTAACACGCCTACGATCGAGATAACGACCAATATGTCTTCTTCCTCCAC
CTCCATGTCCAAGCAACCGGTGGACGAGATCTTGGTGGAACCACCGGCAG
CCCAGCCTCCGCGTCCAGATGACACACTTAGTGTACACTCGGACCACTCC
TTGCATCCCGGATCCCTTGACGCCTCGCATGCCAAGAACAGAAAGATCTA
CATTATGCGGCATGGCGAGCGAGTCGACTTTACTTTTGGAACATGGATTC
CATATTGCTTCGATGAGTTTGGAAATTACATGAGGAAGGATTTAAACATG
CCGAAGACGCTGCCTCGTCGGAAGAACAGTCCGGAGGGCTGGCAGAATGA
TTCTCCGCTGACAAATGTGGGTGTCTATCAGGCCAATCTTATTGGTCAAG
CTTTGCTGGAGGCTCAAGTGCAGATCGACCATGTTTACTGTTCGCCCTCG
TATCGCTGCATCCAGACTTGCACCAGTGCGCTTGAGGGGCTGAAGCTTAC
GGGCAAGCAAAAAATCAAACTGGAGCCGGGCCTGTTTGAGTGGATGGCCT
GGTATCCGAGCGGTGTACCCGACTGGCTGACTAAGAACGAGCTGACCGAG
GCCAAGTTCGACGTTGATTTGGATTATGAGCCGGTGCAGCCAGCGTCTGA
GCTAACTGCTCGCCTAAAGGAGTCCACCGAGCAGTTTTATGAACGTAACC
ATGACGTTATCCTCCAGCTATTGGAGCAGACAACTGGAAATATTTTGGTT
GTTGCCCATGCCACCACACTGGACACTTGTTCCCGTCAACTGACCGGTGG
AGTTCCACGCAGCACGAACGAATTGCGCCAAGTCATCCACAAGATCCCCT
ACTGCAGCCTGGCAACGGTGGAACAGGTGGACGGCGTCTGGAAGCTGGTT
GAACCCGAATGTCTTCCGGTGACGCACTCAAAGAATCCGCGGTTCGAGTG
GAACGCCTTGTCGGCCACCTAGAAGCTTTCTAGACCAT

BS07527.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-RE 2292 CG13604-PE 1..2256 17..2272 11280 100 Plus
CG13604-RA 2256 CG13604-PA 1..2256 17..2272 11280 100 Plus
CG13604-RD 2154 CG13604-PD 551..2154 669..2272 8020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-RE 3042 CG13604-RE 116..2376 12..2272 11290 100 Plus
CG13604-RA 3042 CG13604-RA 116..2376 12..2272 11290 100 Plus
CG13604-RB 2533 CG13604-RB 162..1867 567..2272 8530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23989771..23990652 2033..1152 4410 100 Minus
3R 32079331 3R 23990715..23991027 1151..839 1565 100 Minus
3R 32079331 3R 23992297..23992538 371..130 1210 100 Minus
3R 32079331 3R 23989472..23989710 2272..2034 1195 100 Minus
3R 32079331 3R 23992047..23992242 566..371 980 100 Minus
3R 32079331 3R 23991083..23991255 841..669 865 100 Minus
3R 32079331 3R 23992683..23992801 130..12 580 99.2 Minus
3R 32079331 3R 23991774..23991875 668..567 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:38 has no hits.

BS07527.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:26 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 106..2379 1..2276 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:44 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 121..2376 17..2272 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:31 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 121..2376 17..2272 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:13 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
CG13604-RA 121..2376 17..2272 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:13 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23992047..23992242 371..566 100 <- Minus
3R 23992298..23992538 130..370 100 <- Minus
3R 23992684..23992796 17..129 100   Minus
3R 23991774..23991875 567..668 100 <- Minus
3R 23989472..23989710 2034..2272 100 <- Minus
3R 23989771..23990652 1152..2033 100 <- Minus
3R 23990715..23991027 839..1151 100 <- Minus
3R 23991086..23991255 669..838 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:44 Download gff for BS07527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19816437..19816749 839..1151 100 <- Minus
arm_3R 19816808..19816977 669..838 100 <- Minus
arm_3R 19817496..19817597 567..668 100 <- Minus
arm_3R 19817769..19817964 371..566 100 <- Minus
arm_3R 19815194..19815432 2034..2272 100 <- Minus
arm_3R 19815493..19816374 1152..2033 100 <- Minus
arm_3R 19818020..19818260 130..370 100 <- Minus
arm_3R 19818406..19818518 17..129 100   Minus

BS07527.pep Sequence

Translation from 16 to 2271

> BS07527.pep
MATLPPRKSQTPTRICISKQHLTPLQTLLQMGFPRHRAEKALASTGNRGV
QIASDWLLAHVNDGTLDECAPREYIIYACPTGPFLQQLEEFWAKSRQMCG
WNGAHNYVPHITLVSFFKAPDECSLQLSKALKQVVDMTGALLDRPLKLEP
YMSQNFMGFFVAEEDANYLKRLALQYVKEVSNSIISDTYEQLDAIVACFP
WCGAVSSGTRCIPRSSRSISLEPHVKSLHLTLAYQFPQAQFNALKALVET
LDASCASNWELRLYSRDPRLATKQVQKVVYPHNPHETDELELRIGDYIYL
NTEVVDSSSDGWAEGISWLTGSTGHLPVNYTERTAESDAWTLHRVVQLSK
SVASSLTSAEDLDIVDGRSISTEPDDRQNTAHPDIIEGSSFEESEQSVEK
YLRQTLKPCLELPSVQLLNSHNLTHQHNPNTPTIEITTNMSSSSTSMSKQ
PVDEILVEPPAAQPPRPDDTLSVHSDHSLHPGSLDASHAKNRKIYIMRHG
ERVDFTFGTWIPYCFDEFGNYMRKDLNMPKTLPRRKNSPEGWQNDSPLTN
VGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSALEGLKLTGKQKI
KLEPGLFEWMAWYPSGVPDWLTKNELTEAKFDVDLDYEPVQPASELTARL
KESTEQFYERNHDVILQLLEQTTGNILVVAHATTLDTCSRQLTGGVPRST
NELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPVTHSKNPRFEWNALSA
T*

BS07527.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13604-PE 763 CG13604-PE 1..751 1..751 3985 100 Plus
CG13604-PA 751 CG13604-PA 1..751 1..751 3985 100 Plus
CG13604-PD 717 CG13604-PD 1..717 1..751 3753 95.3 Plus
CG13604-PC 312 CG13604-PC 1..312 440..751 1674 100 Plus
CG13604-PB 312 CG13604-PB 1..312 440..751 1674 100 Plus