Clone Sequence Records
BS07527.3prime Sequence
945 bp (859 high quality bases) assembled on 2006-01-06
> BS07527.3prime
ATGGTCTAGAAAGCTTCTAGGTGGCCGACAAGGCGTTCCACTCGAACCGC
GGATTCTTTGAGTGCGTCACCGGAAGACATTCGGGTTCAACCAGCTTCCA
GACGCCGTCCACCTGTTCCACCGTTGCCAGGCTGCAGTAGGGGATCTTGT
GGATGACTTGGCGCAATTCGTTCGTGCTGCGTGGAACTCCACCGGTCAGT
TGACGGGAACAAGTGTCCAGTGTGGTGGCATGGGCAACAACCAAAATATT
TCCAGTTGTCTGCTCCAATAGCTGGAGGATAACGTCATGGTTACGTTCAT
AAAACTGCTCGGTGGACTCCTTTAGGCGAGCAGTTAGCTCAGACGCTGGC
TGCACCGGCTCATAATCCAAATCAACGTCGAACTTGGCCTCGGTCAGCTC
GTTCTTAGTCAGCCAGTCGGGTACACCGCTCGGATACCAGGCCATCCACT
CAAACAGGCCCGGCTCCAGTTTGATTTTTTGCTTGCCCGTAAGCTTCAGC
CCCTCAAGCGCACTGGTGCAAGTCTGGATGCAGCGATACGAGGGCGAACA
GTAAACATGGTCGATCTGCACTTGAGCCTCCAGCAAAGCTTGACCAATAA
GATTGGCCTGATAGACACCCACATTTGTCAGCGGAGAATCATTCTGCCAG
CCCTCCGGACTGTTCTTCCGACGAGGCAGCGTCTTCGGCATGTTTAAATC
CTTCCTCATGTAATTTCCAAACTCATCGAAGCAATATGGAATCCATGTTC
CAAAAGTAAAGTCGACTCGCTCGCCATGCCGCATAATGTAGATCTTTCTG
TTCTTGGCATGCGAGGCGTCAAGGGATCCGGGATGCAAGGAGTGGTCCGA
GTGTACACTAAGTGTGTCATCTGGACGCGGAGGCTGGGCTGCCGGTGGTT
CCACCAGATCTCGTCCACCGGTTGCTTGGACATGGAAGTGGAGGA
BS07527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-PA | 2256 | CG13604-RA | 1367..2256 | 906..17 | 4450 | 100 | Minus |
CG13604-PA | 2256 | CG13604-RA | 1327..1366 | 945..906 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-RE | 3042 | CG13604-RE | 1447..2376 | 945..17 | 4610 | 99.8 | Minus |
CG13604-RD | 2940 | CG13604-RD | 1345..2274 | 945..17 | 4610 | 99.8 | Minus |
CG13604-RC | 2326 | CG13604-RC | 731..1660 | 945..17 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23989771..23990461 | 256..945 | 3390 | 99.7 | Plus |
3R | 32079331 | 3R | 23989472..23989710 | 17..255 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:48:33 has no hits.
BS07527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:25 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-PA | 1328..2256 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:20 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-PA | 1328..2256 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:36 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RC | 732..1663 | 13..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:29 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RC | 732..1663 | 13..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:29 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23989469..23989710 | 13..255 | 99 | <- | Plus |
3R | 23989771..23990460 | 256..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:36 Download gff for
BS07527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19815191..19815432 | 13..255 | 99 | <- | Plus |
arm_3R | 19815493..19816182 | 256..944 | 99 | | Plus |
BS07527.5prime Sequence
883 bp (783 high quality bases) assembled on 2006-01-06
> BS07527.5prime
GAAGTTATCAGTCGACATGGCCACGCTTCCGCCGCGTAAGAGTCAGACCC
CTACGAGGATCTGCATCTCTAAGCAGCATCTGACGCCGCTCCAAACATTG
CTCCAAATGGGGTTTCCCAGGCATAGAGCGGAGAAAGCTTTGGCTTCAAC
TGGTAATCGTGGTGTCCAGATTGCCTCGGATTGGTTGCTGGCACATGTCA
ACGATGGCACCCTGGACGAGTGCGCCCCCAGGGAATATATTATATATGCT
TGTCCCACGGGTCCGTTTCTGCAGCAGCTGGAGGAGTTCTGGGCCAAGTC
GCGCCAAATGTGCGGTTGGAATGGAGCACACAACTACGTGCCTCACATAA
CCCTGGTTTCGTTTTTTAAAGCCCCCGATGAGTGCTCGCTGCAGCTGTCC
AAGGCGCTCAAACAGGTGGTGGACATGACGGGCGCCTTGTTGGATCGCCC
CCTTAAACTGGAGCCCTACATGAGTCAAAACTTCATGGGTTTTTTCGTGG
CCGAGGAGGATGCCAACTATCTGAAACGACTGGCCCTGCAGTACGTGAAG
GAGGTGTCCAACTCAATCATTAGCGATACCTATGAGCAGTTGGACGCCAT
TGTGGCCTGCTTTCCCTGGTGCGGTGCTGTCTCCTCGGGCACCCGCTGCA
TTCCGCGCAGCAGTCGATCCATCTCACTCGAGCCACACGTTAAGAGCCTG
CACCTGACGCTTGCCTACCAGTTCCCGCAGGCACAGTTTAATGCACTGAA
AGCACTCGTGGAGACCTTAGACGCCAGCTGCGCTTCAAATTGGGAACTTC
GTCTATATTCCCGCGATCCTCGGCTCGCCACCAAACAAGTTCAAAAGGTA
GTTTATCCACACAACCCGCACGAGACGGATGAA
BS07527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-PA | 2256 | CG13604-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-RE | 3042 | CG13604-RE | 116..987 | 12..883 | 4330 | 99.8 | Plus |
CG13604-RA | 3042 | CG13604-RA | 116..987 | 12..883 | 4330 | 99.8 | Plus |
CG13604-RD | 2940 | CG13604-RD | 116..674 | 12..570 | 2765 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23992297..23992538 | 371..130 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 23992047..23992242 | 566..371 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23991083..23991255 | 841..669 | 850 | 99.4 | Minus |
3R | 32079331 | 3R | 23992683..23992801 | 130..12 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 23991774..23991875 | 668..567 | 510 | 100 | Minus |
3R | 32079331 | 3R | 23990983..23991027 | 883..839 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:05:27 has no hits.
BS07527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:26 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:22 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:59 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 106..987 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:33 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 106..987 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:33 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23990983..23991027 | 839..883 | 100 | <- | Minus |
3R | 23991086..23991255 | 669..838 | 99 | <- | Minus |
3R | 23991774..23991875 | 567..668 | 100 | <- | Minus |
3R | 23992047..23992242 | 371..566 | 100 | <- | Minus |
3R | 23992298..23992538 | 130..370 | 100 | <- | Minus |
3R | 23992684..23992811 | 1..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:59 Download gff for
BS07527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19817496..19817597 | 567..668 | 100 | <- | Minus |
arm_3R | 19816808..19816977 | 669..838 | 99 | <- | Minus |
arm_3R | 19816705..19816749 | 839..883 | 100 | <- | Minus |
arm_3R | 19817769..19817964 | 371..566 | 100 | <- | Minus |
arm_3R | 19818020..19818260 | 130..370 | 100 | <- | Minus |
arm_3R | 19818406..19818533 | 1..129 | 96 | | Minus |
BS07527.complete Sequence
2288 bp assembled on 2008-08-14
GenBank Submission: FJ635894
> BS07527.complete
GAAGTTATCAGTCGACATGGCCACGCTTCCGCCGCGTAAGAGTCAGACCC
CTACGAGGATCTGCATCTCTAAGCAGCATCTGACGCCGCTCCAAACATTG
CTCCAAATGGGGTTTCCCAGGCATAGAGCGGAGAAAGCTTTGGCTTCAAC
TGGTAATCGTGGTGTCCAGATTGCCTCGGATTGGTTGCTGGCACATGTCA
ACGATGGCACCCTGGACGAGTGCGCCCCCAGGGAATATATTATATATGCT
TGTCCCACGGGTCCGTTTCTGCAGCAGCTGGAGGAGTTCTGGGCCAAGTC
GCGCCAAATGTGCGGTTGGAATGGAGCACACAACTACGTGCCTCACATAA
CCCTGGTTTCGTTTTTTAAAGCCCCCGATGAGTGCTCGCTGCAGCTGTCC
AAGGCGCTCAAACAGGTGGTGGACATGACGGGCGCCTTGTTGGATCGCCC
CCTTAAACTGGAGCCCTACATGAGTCAAAACTTCATGGGTTTTTTCGTGG
CCGAGGAGGATGCCAACTATCTGAAACGACTGGCCCTGCAGTACGTGAAG
GAGGTGTCCAACTCAATCATTAGCGATACCTATGAGCAGTTGGACGCCAT
TGTGGCCTGCTTTCCCTGGTGCGGTGCTGTCTCCTCGGGCACCCGCTGCA
TTCCGCGCAGCAGTCGATCCATCTCACTCGAGCCACACGTTAAGAGCCTG
CACCTGACGCTTGCCTACCAGTTCCCGCAGGCACAGTTTAATGCACTGAA
AGCACTCGTGGAGACCTTAGACGCCAGCTGCGCTTCCAATTGGGAACTTC
GTCTATATTCCCGCGATCCTCGGCTCGCCACCAAACAAGTTCAAAAGGTA
GTTTATCCACACAACCCGCACGAGACGGATGAACTGGAGCTCCGAATCGG
CGATTACATCTATTTGAATACCGAGGTAGTAGACAGTTCCAGTGACGGTT
GGGCCGAAGGCATATCTTGGTTGACCGGAAGCACCGGTCATTTGCCCGTC
AATTACACCGAACGCACCGCAGAATCGGACGCCTGGACCCTGCATCGTGT
GGTCCAGCTCTCCAAGAGCGTAGCTTCATCATTAACTTCCGCCGAGGACT
TGGACATTGTGGACGGACGCAGTATATCAACGGAGCCCGACGATCGTCAG
AACACAGCACATCCTGATATAATTGAAGGCTCTTCGTTTGAGGAATCCGA
ACAGAGCGTGGAGAAGTATTTGAGACAGACTTTGAAGCCCTGCCTGGAAC
TACCCTCAGTGCAATTGCTAAACAGCCACAACTTGACCCATCAGCATAAC
CCTAACACGCCTACGATCGAGATAACGACCAATATGTCTTCTTCCTCCAC
CTCCATGTCCAAGCAACCGGTGGACGAGATCTTGGTGGAACCACCGGCAG
CCCAGCCTCCGCGTCCAGATGACACACTTAGTGTACACTCGGACCACTCC
TTGCATCCCGGATCCCTTGACGCCTCGCATGCCAAGAACAGAAAGATCTA
CATTATGCGGCATGGCGAGCGAGTCGACTTTACTTTTGGAACATGGATTC
CATATTGCTTCGATGAGTTTGGAAATTACATGAGGAAGGATTTAAACATG
CCGAAGACGCTGCCTCGTCGGAAGAACAGTCCGGAGGGCTGGCAGAATGA
TTCTCCGCTGACAAATGTGGGTGTCTATCAGGCCAATCTTATTGGTCAAG
CTTTGCTGGAGGCTCAAGTGCAGATCGACCATGTTTACTGTTCGCCCTCG
TATCGCTGCATCCAGACTTGCACCAGTGCGCTTGAGGGGCTGAAGCTTAC
GGGCAAGCAAAAAATCAAACTGGAGCCGGGCCTGTTTGAGTGGATGGCCT
GGTATCCGAGCGGTGTACCCGACTGGCTGACTAAGAACGAGCTGACCGAG
GCCAAGTTCGACGTTGATTTGGATTATGAGCCGGTGCAGCCAGCGTCTGA
GCTAACTGCTCGCCTAAAGGAGTCCACCGAGCAGTTTTATGAACGTAACC
ATGACGTTATCCTCCAGCTATTGGAGCAGACAACTGGAAATATTTTGGTT
GTTGCCCATGCCACCACACTGGACACTTGTTCCCGTCAACTGACCGGTGG
AGTTCCACGCAGCACGAACGAATTGCGCCAAGTCATCCACAAGATCCCCT
ACTGCAGCCTGGCAACGGTGGAACAGGTGGACGGCGTCTGGAAGCTGGTT
GAACCCGAATGTCTTCCGGTGACGCACTCAAAGAATCCGCGGTTCGAGTG
GAACGCCTTGTCGGCCACCTAGAAGCTTTCTAGACCAT
BS07527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-RE | 2292 | CG13604-PE | 1..2256 | 17..2272 | 11280 | 100 | Plus |
CG13604-RA | 2256 | CG13604-PA | 1..2256 | 17..2272 | 11280 | 100 | Plus |
CG13604-RD | 2154 | CG13604-PD | 551..2154 | 669..2272 | 8020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-RE | 3042 | CG13604-RE | 116..2376 | 12..2272 | 11290 | 100 | Plus |
CG13604-RA | 3042 | CG13604-RA | 116..2376 | 12..2272 | 11290 | 100 | Plus |
CG13604-RB | 2533 | CG13604-RB | 162..1867 | 567..2272 | 8530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23989771..23990652 | 2033..1152 | 4410 | 100 | Minus |
3R | 32079331 | 3R | 23990715..23991027 | 1151..839 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23992297..23992538 | 371..130 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 23989472..23989710 | 2272..2034 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 23992047..23992242 | 566..371 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23991083..23991255 | 841..669 | 865 | 100 | Minus |
3R | 32079331 | 3R | 23992683..23992801 | 130..12 | 580 | 99.2 | Minus |
3R | 32079331 | 3R | 23991774..23991875 | 668..567 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:20:38 has no hits.
BS07527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:26 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 106..2379 | 1..2276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:44 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 121..2376 | 17..2272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:31 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 121..2376 | 17..2272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:13 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13604-RA | 121..2376 | 17..2272 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:13 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23992047..23992242 | 371..566 | 100 | <- | Minus |
3R | 23992298..23992538 | 130..370 | 100 | <- | Minus |
3R | 23992684..23992796 | 17..129 | 100 | | Minus |
3R | 23991774..23991875 | 567..668 | 100 | <- | Minus |
3R | 23989472..23989710 | 2034..2272 | 100 | <- | Minus |
3R | 23989771..23990652 | 1152..2033 | 100 | <- | Minus |
3R | 23990715..23991027 | 839..1151 | 100 | <- | Minus |
3R | 23991086..23991255 | 669..838 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:44 Download gff for
BS07527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19816437..19816749 | 839..1151 | 100 | <- | Minus |
arm_3R | 19816808..19816977 | 669..838 | 100 | <- | Minus |
arm_3R | 19817496..19817597 | 567..668 | 100 | <- | Minus |
arm_3R | 19817769..19817964 | 371..566 | 100 | <- | Minus |
arm_3R | 19815194..19815432 | 2034..2272 | 100 | <- | Minus |
arm_3R | 19815493..19816374 | 1152..2033 | 100 | <- | Minus |
arm_3R | 19818020..19818260 | 130..370 | 100 | <- | Minus |
arm_3R | 19818406..19818518 | 17..129 | 100 | | Minus |
BS07527.pep Sequence
Translation from 16 to 2271
> BS07527.pep
MATLPPRKSQTPTRICISKQHLTPLQTLLQMGFPRHRAEKALASTGNRGV
QIASDWLLAHVNDGTLDECAPREYIIYACPTGPFLQQLEEFWAKSRQMCG
WNGAHNYVPHITLVSFFKAPDECSLQLSKALKQVVDMTGALLDRPLKLEP
YMSQNFMGFFVAEEDANYLKRLALQYVKEVSNSIISDTYEQLDAIVACFP
WCGAVSSGTRCIPRSSRSISLEPHVKSLHLTLAYQFPQAQFNALKALVET
LDASCASNWELRLYSRDPRLATKQVQKVVYPHNPHETDELELRIGDYIYL
NTEVVDSSSDGWAEGISWLTGSTGHLPVNYTERTAESDAWTLHRVVQLSK
SVASSLTSAEDLDIVDGRSISTEPDDRQNTAHPDIIEGSSFEESEQSVEK
YLRQTLKPCLELPSVQLLNSHNLTHQHNPNTPTIEITTNMSSSSTSMSKQ
PVDEILVEPPAAQPPRPDDTLSVHSDHSLHPGSLDASHAKNRKIYIMRHG
ERVDFTFGTWIPYCFDEFGNYMRKDLNMPKTLPRRKNSPEGWQNDSPLTN
VGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSALEGLKLTGKQKI
KLEPGLFEWMAWYPSGVPDWLTKNELTEAKFDVDLDYEPVQPASELTARL
KESTEQFYERNHDVILQLLEQTTGNILVVAHATTLDTCSRQLTGGVPRST
NELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPVTHSKNPRFEWNALSA
T*
BS07527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13604-PE | 763 | CG13604-PE | 1..751 | 1..751 | 3985 | 100 | Plus |
CG13604-PA | 751 | CG13604-PA | 1..751 | 1..751 | 3985 | 100 | Plus |
CG13604-PD | 717 | CG13604-PD | 1..717 | 1..751 | 3753 | 95.3 | Plus |
CG13604-PC | 312 | CG13604-PC | 1..312 | 440..751 | 1674 | 100 | Plus |
CG13604-PB | 312 | CG13604-PB | 1..312 | 440..751 | 1674 | 100 | Plus |