Clone Sequence Records
BS07531.3prime Sequence
980 bp (868 high quality bases) assembled on 2006-01-06
> BS07531.3prime
ATGGTCTAGAAAGCTTTCACTGGTCGGCATCAAGAAGACCCTCTGCCTCG
AAATCAGGCAGAAGTTCCCGCAAGATCCTTTGAGCAATCGGATTCCTATA
GCAGGCATCCTTGAAATTCATGGCCCGTTGGTTGTTCTCCATTAGGGCAT
TAAAATCGGCATCTGCTGTTTCCACATTTCGCTGAACTGGAAACACCGAA
ATGGATGTGTGGGCAGCGTAGAATTTCTTCTGCTGCAATTGCTGGTGGAA
CTGATGCAAGCTTGGAATTGTGGATCGGTACTGCAGTTTTTTCAATGTAT
CTGCGAAATGCCTAAAGTAGTAGGCAATCAGCTGCTCCTGATGGTTCTGA
TGAAGATCGAACTCCAACGAGGAGTTCATGAAGTAAAACAGATCAAGTGC
CGGCGATCCCCAGGCCGTGTATTGGAAATCAATAATAACCACGTCAATTG
GCTCACCGGTCTGCTTGTCGTACTTAACCAGCACATTATTGGTCCAAAGA
TCTCCGTGAGCCAGGACATTAATGTGCCCAGGACTAATGTCGAAGATTCT
TTTGCCCAGTTCCATGTAGATGGGCACCAGAGCCTTTAACTTCTCTGCGT
ACTTTTCGTATCCTGGCCACTGAGCCACACGCCTAGTGGCCGCCTGGAGC
ATGCCCACAAATGCTGGTTCATAGTTATCGGTATAGCGGTTGAAGAACCC
TCGATCGTAGCTCTCGAGGATGTGGTTCTCGCGTTCGTTCAGGACCGCCG
AAGTGGCATGCATTTTGGCCAGCTTACGGAGCACAATTCGAGCTAGCTTC
TGGTCCAATCCGACCAAGCGATCCGGCATTACAAAGCCACGAGCATTCAG
ATCTTCGAAAATCAGCGCCGAGTTATCTATGTCCACCGCCATGGTTTCGG
CAAAGATCTGCTCCGCATCACCGATTTCCCGGAGGAGGGGCTTCTGCTTG
GGGCAGACTTGCTCGTAGATGATCATCTCA
BS07531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-PB | 1320 | CG11892-RB | 357..1320 | 980..17 | 4720 | 99.5 | Minus |
CG11892-PA | 1320 | CG11892-RA | 357..1320 | 980..17 | 4720 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-RA | 1580 | CG11892-RA | 472..1435 | 980..17 | 4760 | 99.6 | Minus |
CG11892-RB | 1510 | CG11892-RB | 402..1365 | 980..17 | 4760 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25282062..25282825 | 980..217 | 3760 | 99.5 | Minus |
3R | 32079331 | 3R | 25282892..25283092 | 217..17 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:14:30 has no hits.
BS07531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:32 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-PB | 358..1320 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:29 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-PA | 358..1320 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:00 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 403..1374 | 10..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:33 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 403..1374 | 10..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:33 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25282893..25283101 | 10..216 | 98 | | Minus |
3R | 25282063..25282825 | 217..979 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:00 Download gff for
BS07531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21107785..21108547 | 217..979 | 99 | -> | Minus |
arm_3R | 21108615..21108823 | 10..216 | 98 | | Minus |
BS07531.5prime Sequence
844 bp (801 high quality bases) assembled on 2006-01-06
> BS07531.5prime
GAAGTTATCAGTCGACATGTCGGTTTCGGATCTGATTGGTGCCCTTGATG
CCATTCCCAAGCTCACCGTTCCCGAGTCTCTTGTGCCGGAAGAAACTTCG
GTTTTCCTGGATGCTCCTGAATGGCTGACCGAAAGCTATCTGCAGGATGC
CTTGCGCAAATACTACAAGGACCAACTCATTAGGATCAACTGGGTCAAGG
TTAATCCTGCCTTGGGCAAGGGTGAAAACTACGGTGGAGTCCTCACCCGT
GTGAAGGCACAGTTCACTCGGAGCGATGGTAGCTCCCAACTGGGTCACTA
CATTGTAAAGTCCACATTTGAGGGGAATGAGTTCGCCCAGAATGCCATGA
AGCCGTACGACATCTTCAATCGTGAGATGATCATCTACGAGCAGGTCTTG
CCCAAGCAGAAGGCCCTCCTCCGGGAAATCGGTGATGCGGAGCAGATCTT
TGCCGAAACCATGGCGGTGGACATAGATAACTCGGCGCTGATTTTCGAAG
ATCTGAATGCTCGTGGCTTTGTAATGCCGGATCGCTTGGTCGGATTGGAC
CAGAAGCTAGCTCGAATTGTGCTCCGTAAGCTGGCCAAAATGCATGCCAC
TTCGGCGGTCCTGAACGAACGCGAGAACCACATCCTCGAGAGCTACGATC
GAGGGTTCTTCAACCGCTATACCGATAACTATGAACCAGCATTTGTGGGC
ATGCTCCAGGCGGCCACTAGGCGTGTGGCTCAGTGGCCAGGATACGAAAA
GTACGCAGAGAAGTTAAAGGCTCTGGTGCCCATCTACATGGAACTGGGCA
AAAGAATCTTCGACATTAGTCCTGGGCACATTAATGTCCTGGCT
BS07531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-PB | 1320 | CG11892-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
CG11892-PA | 1320 | CG11892-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-RA | 1580 | CG11892-RA | 116..943 | 17..844 | 4140 | 100 | Plus |
CG11892-RB | 1510 | CG11892-RB | 46..873 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25281706..25282533 | 17..844 | 4140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:08:24 has no hits.
BS07531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:33 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-PB | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:30 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:03 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 41..873 | 12..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:54 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 41..873 | 12..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:54 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25281701..25282533 | 12..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:03 Download gff for
BS07531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21107423..21108255 | 12..844 | 99 | | Plus |
BS07531.complete Sequence
1352 bp (1352 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635895
> BS07531.complete
GAAGTTATCAGTCGACATGTCGGTTTCGGATCTGATTGGTGCCCTTGATG
CCATTCCCAAGCTCACCGTTCCCGAGTCTCTTGTGCCGGAAGAAACTTCG
GTTTTCCTGGATGCTCCTGAATGGCTGACCGAAAGCTATCTGCAGGATGC
CTTGCGCAAATACTACAAGGACCAACTCATTAGGATCAACTGGGTCAAGG
TTAATCCTGCCTTGGGCAAGGGTGAAAACTACGGTGGAGTCCTCACCCGT
GTGAAGGCACAGTTCACTCGGAGCGATGGTAGCTCCCAACTGGGTCACTA
CATTGTAAAGTCCACATTTGAGGGGAATGAGTTCGCCCAGAATGCCATGA
AGCCGTACGACATCTTCAATCGTGAGATGATCATCTACGAGCAGGTCTTG
CCCAAGCAGAAGGCCCTCCTCCGGGAAATCGGTGATGCGGAGCAGATCTT
TGCCGAAACCATGGCGGTGGACATAGATAACTCGGCGCTGATTTTCGAAG
ATCTGAATGCTCGTGGCTTTGTAATGCCGGATCGCTTGGTCGGATTGGAC
CAGAAGCTAGCTCGAATTGTGCTCCGTAAGCTGGCCAAAATGCATGCCAC
TTCGGCGGTCCTGAACGAACGCGAGAACCACATCCTCGAGAGCTACGATC
GAGGGTTCTTCAACCGCTATACCGATAACTATGAACCAGCATTTGTGGGC
ATGCTCCAGGCGGCCACTAGGCGTGTGGCTCAGTGGCCAGGATACGAAAA
GTACGCAGAGAAGTTAAAGGCTCTGGTGCCCATCTACATGGAACTGGGCA
AAAGAATCTTCGACATTAGTCCTGGGCACATTAATGTCCTGGCTCACGGA
GATCTTTGGACCAATAATGTGCTGGTTAAGTACGACAAGCAGACCGGTGA
GCCAATTGACGTGGTTATTATTGATTTCCAATACACGGCCTGGGGATCGC
CGGCACTTGATCTGTTTTACTTCATGAACTCCTCGTTGGAGTTCGATCTT
CATCAGAACCATCAGGAGCAGCTGATTGCCTACTACTTTAGGCATTTCGC
AGATACATTGAAAAAACTGCAGTACCGATCCACAATTCCAAGCTTGCATC
AGTTCCACCAGCAATTGCAGCAGAAGAAATTCTACGCTGCCCACACATCC
ATTTCGGTGTTTCCAGTTCAGCGAAATGTGGAAACAGCAGATGCCGATTT
TAATGCCCTAATGGAGAACAACCAACGGGCCATGAATTTCAAGGATGCCT
GCTATAGGAATCCGATTGCTCAAAGGATCTTGCGGGAACTTCTGCCTGAT
TTCGAGGCAGAGGGTCTTCTTGATGCCGACCAGTGAAAGCTTTCTAGACC
AT
BS07531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-RA | 1320 | CG11892-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
CG11892-RB | 1320 | CG11892-PB | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-RA | 1580 | CG11892-RA | 116..1435 | 17..1336 | 6600 | 100 | Plus |
CG11892-RB | 1510 | CG11892-RB | 46..1365 | 17..1336 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25281706..25282825 | 17..1136 | 5600 | 100 | Plus |
3R | 32079331 | 3R | 25282892..25283092 | 1136..1336 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:19:42 has no hits.
BS07531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:38 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:41 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RA | 111..1444 | 12..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:28 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 46..1364 | 17..1335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:38 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RA | 111..1444 | 12..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:00 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11892-RB | 46..1364 | 17..1335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:00 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25281706..25282825 | 17..1136 | 100 | -> | Plus |
3R | 25282893..25283091 | 1137..1335 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:28 Download gff for
BS07531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21107428..21108547 | 17..1136 | 100 | -> | Plus |
arm_3R | 21108615..21108813 | 1137..1335 | 100 | | Plus |
BS07531.pep Sequence
Translation from 16 to 1335
> BS07531.pep
MSVSDLIGALDAIPKLTVPESLVPEETSVFLDAPEWLTESYLQDALRKYY
KDQLIRINWVKVNPALGKGENYGGVLTRVKAQFTRSDGSSQLGHYIVKST
FEGNEFAQNAMKPYDIFNREMIIYEQVLPKQKALLREIGDAEQIFAETMA
VDIDNSALIFEDLNARGFVMPDRLVGLDQKLARIVLRKLAKMHATSAVLN
ERENHILESYDRGFFNRYTDNYEPAFVGMLQAATRRVAQWPGYEKYAEKL
KALVPIYMELGKRIFDISPGHINVLAHGDLWTNNVLVKYDKQTGEPIDVV
IIDFQYTAWGSPALDLFYFMNSSLEFDLHQNHQEQLIAYYFRHFADTLKK
LQYRSTIPSLHQFHQQLQQKKFYAAHTSISVFPVQRNVETADADFNALME
NNQRAMNFKDACYRNPIAQRILRELLPDFEAEGLLDADQ*
BS07531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11892-PA | 439 | CG11892-PA | 1..439 | 1..439 | 2279 | 100 | Plus |
CG11892-PB | 439 | CG11892-PB | 1..439 | 1..439 | 2279 | 100 | Plus |
CG10514-PA | 413 | CG10514-PA | 4..411 | 33..439 | 1089 | 50.5 | Plus |
CG10513-PB | 422 | CG10513-PB | 7..419 | 25..436 | 860 | 41.8 | Plus |
CG31380-PA | 405 | CG31380-PA | 4..398 | 36..436 | 825 | 43.4 | Plus |