Clone BS07531 Report

Search the DGRC for BS07531

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG11892-RA
Protein status:BS07531.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07531.3prime Sequence

980 bp (868 high quality bases) assembled on 2006-01-06

> BS07531.3prime
ATGGTCTAGAAAGCTTTCACTGGTCGGCATCAAGAAGACCCTCTGCCTCG
AAATCAGGCAGAAGTTCCCGCAAGATCCTTTGAGCAATCGGATTCCTATA
GCAGGCATCCTTGAAATTCATGGCCCGTTGGTTGTTCTCCATTAGGGCAT
TAAAATCGGCATCTGCTGTTTCCACATTTCGCTGAACTGGAAACACCGAA
ATGGATGTGTGGGCAGCGTAGAATTTCTTCTGCTGCAATTGCTGGTGGAA
CTGATGCAAGCTTGGAATTGTGGATCGGTACTGCAGTTTTTTCAATGTAT
CTGCGAAATGCCTAAAGTAGTAGGCAATCAGCTGCTCCTGATGGTTCTGA
TGAAGATCGAACTCCAACGAGGAGTTCATGAAGTAAAACAGATCAAGTGC
CGGCGATCCCCAGGCCGTGTATTGGAAATCAATAATAACCACGTCAATTG
GCTCACCGGTCTGCTTGTCGTACTTAACCAGCACATTATTGGTCCAAAGA
TCTCCGTGAGCCAGGACATTAATGTGCCCAGGACTAATGTCGAAGATTCT
TTTGCCCAGTTCCATGTAGATGGGCACCAGAGCCTTTAACTTCTCTGCGT
ACTTTTCGTATCCTGGCCACTGAGCCACACGCCTAGTGGCCGCCTGGAGC
ATGCCCACAAATGCTGGTTCATAGTTATCGGTATAGCGGTTGAAGAACCC
TCGATCGTAGCTCTCGAGGATGTGGTTCTCGCGTTCGTTCAGGACCGCCG
AAGTGGCATGCATTTTGGCCAGCTTACGGAGCACAATTCGAGCTAGCTTC
TGGTCCAATCCGACCAAGCGATCCGGCATTACAAAGCCACGAGCATTCAG
ATCTTCGAAAATCAGCGCCGAGTTATCTATGTCCACCGCCATGGTTTCGG
CAAAGATCTGCTCCGCATCACCGATTTCCCGGAGGAGGGGCTTCTGCTTG
GGGCAGACTTGCTCGTAGATGATCATCTCA

BS07531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-PB 1320 CG11892-RB 357..1320 980..17 4720 99.5 Minus
CG11892-PA 1320 CG11892-RA 357..1320 980..17 4720 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-RA 1580 CG11892-RA 472..1435 980..17 4760 99.6 Minus
CG11892-RB 1510 CG11892-RB 402..1365 980..17 4760 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25282062..25282825 980..217 3760 99.5 Minus
3R 32079331 3R 25282892..25283092 217..17 1005 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:14:30 has no hits.

BS07531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:32 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-PB 358..1320 17..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:29 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-PA 358..1320 17..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:00 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 403..1374 10..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:33 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 403..1374 10..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:33 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25282893..25283101 10..216 98   Minus
3R 25282063..25282825 217..979 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:00 Download gff for BS07531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21107785..21108547 217..979 99 -> Minus
arm_3R 21108615..21108823 10..216 98   Minus

BS07531.5prime Sequence

844 bp (801 high quality bases) assembled on 2006-01-06

> BS07531.5prime
GAAGTTATCAGTCGACATGTCGGTTTCGGATCTGATTGGTGCCCTTGATG
CCATTCCCAAGCTCACCGTTCCCGAGTCTCTTGTGCCGGAAGAAACTTCG
GTTTTCCTGGATGCTCCTGAATGGCTGACCGAAAGCTATCTGCAGGATGC
CTTGCGCAAATACTACAAGGACCAACTCATTAGGATCAACTGGGTCAAGG
TTAATCCTGCCTTGGGCAAGGGTGAAAACTACGGTGGAGTCCTCACCCGT
GTGAAGGCACAGTTCACTCGGAGCGATGGTAGCTCCCAACTGGGTCACTA
CATTGTAAAGTCCACATTTGAGGGGAATGAGTTCGCCCAGAATGCCATGA
AGCCGTACGACATCTTCAATCGTGAGATGATCATCTACGAGCAGGTCTTG
CCCAAGCAGAAGGCCCTCCTCCGGGAAATCGGTGATGCGGAGCAGATCTT
TGCCGAAACCATGGCGGTGGACATAGATAACTCGGCGCTGATTTTCGAAG
ATCTGAATGCTCGTGGCTTTGTAATGCCGGATCGCTTGGTCGGATTGGAC
CAGAAGCTAGCTCGAATTGTGCTCCGTAAGCTGGCCAAAATGCATGCCAC
TTCGGCGGTCCTGAACGAACGCGAGAACCACATCCTCGAGAGCTACGATC
GAGGGTTCTTCAACCGCTATACCGATAACTATGAACCAGCATTTGTGGGC
ATGCTCCAGGCGGCCACTAGGCGTGTGGCTCAGTGGCCAGGATACGAAAA
GTACGCAGAGAAGTTAAAGGCTCTGGTGCCCATCTACATGGAACTGGGCA
AAAGAATCTTCGACATTAGTCCTGGGCACATTAATGTCCTGGCT

BS07531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-PB 1320 CG11892-RB 1..828 17..844 4140 100 Plus
CG11892-PA 1320 CG11892-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-RA 1580 CG11892-RA 116..943 17..844 4140 100 Plus
CG11892-RB 1510 CG11892-RB 46..873 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25281706..25282533 17..844 4140 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:08:24 has no hits.

BS07531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:33 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-PB 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:30 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:35:03 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 41..873 12..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:54 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 41..873 12..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:54 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25281701..25282533 12..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:35:03 Download gff for BS07531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21107423..21108255 12..844 99   Plus

BS07531.complete Sequence

1352 bp (1352 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635895

> BS07531.complete
GAAGTTATCAGTCGACATGTCGGTTTCGGATCTGATTGGTGCCCTTGATG
CCATTCCCAAGCTCACCGTTCCCGAGTCTCTTGTGCCGGAAGAAACTTCG
GTTTTCCTGGATGCTCCTGAATGGCTGACCGAAAGCTATCTGCAGGATGC
CTTGCGCAAATACTACAAGGACCAACTCATTAGGATCAACTGGGTCAAGG
TTAATCCTGCCTTGGGCAAGGGTGAAAACTACGGTGGAGTCCTCACCCGT
GTGAAGGCACAGTTCACTCGGAGCGATGGTAGCTCCCAACTGGGTCACTA
CATTGTAAAGTCCACATTTGAGGGGAATGAGTTCGCCCAGAATGCCATGA
AGCCGTACGACATCTTCAATCGTGAGATGATCATCTACGAGCAGGTCTTG
CCCAAGCAGAAGGCCCTCCTCCGGGAAATCGGTGATGCGGAGCAGATCTT
TGCCGAAACCATGGCGGTGGACATAGATAACTCGGCGCTGATTTTCGAAG
ATCTGAATGCTCGTGGCTTTGTAATGCCGGATCGCTTGGTCGGATTGGAC
CAGAAGCTAGCTCGAATTGTGCTCCGTAAGCTGGCCAAAATGCATGCCAC
TTCGGCGGTCCTGAACGAACGCGAGAACCACATCCTCGAGAGCTACGATC
GAGGGTTCTTCAACCGCTATACCGATAACTATGAACCAGCATTTGTGGGC
ATGCTCCAGGCGGCCACTAGGCGTGTGGCTCAGTGGCCAGGATACGAAAA
GTACGCAGAGAAGTTAAAGGCTCTGGTGCCCATCTACATGGAACTGGGCA
AAAGAATCTTCGACATTAGTCCTGGGCACATTAATGTCCTGGCTCACGGA
GATCTTTGGACCAATAATGTGCTGGTTAAGTACGACAAGCAGACCGGTGA
GCCAATTGACGTGGTTATTATTGATTTCCAATACACGGCCTGGGGATCGC
CGGCACTTGATCTGTTTTACTTCATGAACTCCTCGTTGGAGTTCGATCTT
CATCAGAACCATCAGGAGCAGCTGATTGCCTACTACTTTAGGCATTTCGC
AGATACATTGAAAAAACTGCAGTACCGATCCACAATTCCAAGCTTGCATC
AGTTCCACCAGCAATTGCAGCAGAAGAAATTCTACGCTGCCCACACATCC
ATTTCGGTGTTTCCAGTTCAGCGAAATGTGGAAACAGCAGATGCCGATTT
TAATGCCCTAATGGAGAACAACCAACGGGCCATGAATTTCAAGGATGCCT
GCTATAGGAATCCGATTGCTCAAAGGATCTTGCGGGAACTTCTGCCTGAT
TTCGAGGCAGAGGGTCTTCTTGATGCCGACCAGTGAAAGCTTTCTAGACC
AT

BS07531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-RA 1320 CG11892-PA 1..1320 17..1336 6600 100 Plus
CG11892-RB 1320 CG11892-PB 1..1320 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-RA 1580 CG11892-RA 116..1435 17..1336 6600 100 Plus
CG11892-RB 1510 CG11892-RB 46..1365 17..1336 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25281706..25282825 17..1136 5600 100 Plus
3R 32079331 3R 25282892..25283092 1136..1336 1005 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:19:42 has no hits.

BS07531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:38 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG11892-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:41 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG11892-RA 111..1444 12..1343 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:28 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 46..1364 17..1335 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:38 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG11892-RA 111..1444 12..1343 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:00 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
CG11892-RB 46..1364 17..1335 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:00 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25281706..25282825 17..1136 100 -> Plus
3R 25282893..25283091 1137..1335 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:28 Download gff for BS07531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21107428..21108547 17..1136 100 -> Plus
arm_3R 21108615..21108813 1137..1335 100   Plus

BS07531.pep Sequence

Translation from 16 to 1335

> BS07531.pep
MSVSDLIGALDAIPKLTVPESLVPEETSVFLDAPEWLTESYLQDALRKYY
KDQLIRINWVKVNPALGKGENYGGVLTRVKAQFTRSDGSSQLGHYIVKST
FEGNEFAQNAMKPYDIFNREMIIYEQVLPKQKALLREIGDAEQIFAETMA
VDIDNSALIFEDLNARGFVMPDRLVGLDQKLARIVLRKLAKMHATSAVLN
ERENHILESYDRGFFNRYTDNYEPAFVGMLQAATRRVAQWPGYEKYAEKL
KALVPIYMELGKRIFDISPGHINVLAHGDLWTNNVLVKYDKQTGEPIDVV
IIDFQYTAWGSPALDLFYFMNSSLEFDLHQNHQEQLIAYYFRHFADTLKK
LQYRSTIPSLHQFHQQLQQKKFYAAHTSISVFPVQRNVETADADFNALME
NNQRAMNFKDACYRNPIAQRILRELLPDFEAEGLLDADQ*

BS07531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11892-PA 439 CG11892-PA 1..439 1..439 2279 100 Plus
CG11892-PB 439 CG11892-PB 1..439 1..439 2279 100 Plus
CG10514-PA 413 CG10514-PA 4..411 33..439 1089 50.5 Plus
CG10513-PB 422 CG10513-PB 7..419 25..436 860 41.8 Plus
CG31380-PA 405 CG31380-PA 4..398 36..436 825 43.4 Plus