Clone Sequence Records
BS07533.3prime Sequence
957 bp (829 high quality bases) assembled on 2006-01-06
> BS07533.3prime
ATGGTCTAGAAAGCTTCTACTCTGGTCCCTCCAAAAGCCAGTAGGTCTCC
ATCTCGCCCTTGCCCTTGACCTTGACAAATCCCCGCGCTTCAACCTTATA
GCCCACCTTTTGCACCTTCAGCGCAGTATAGTTGGACAGCTGGATCATCC
AGGGATCGCTGCTGCTCTCCATTCGCGAGGCGGTGTTAACGGTGTCTCCA
AAGAGACAGTATCGAGGAACCTTCATCCCAACCACGCCGGCGACGACGGG
TCCCGAGTTAATGCCCACCCGTATAGCCACCCCGGGAAGAGCATGGGCTT
TGACCTTCTTCATCACCCTTAAGGCCAAATCGCAGGCGTGTTCGGCATGC
AGGGGATTCACATCAGGAGCACCCGAAACAGCCATGTAAACCATGCCCAC
GGTCTCCACTTTGTAAACAAACGGGGAAATGATCTCTTCGTCCAATGCCG
AAAACACTTTGTTTAAGGTGGTCACCGCCTGCATGGCATCCTGGATGTTG
TTGGACCCACTGTCATAGATATTCATTACCTCGATGAAAATGACGGATAC
CTCCTCGAAACTCTGACACACGTGCTCCTCGCTCTTTCTCATTCGCTCGG
CAATGGGTCGCGGTATCATGGAATACAGTAGCTCATCTCCCTGCCGCTTC
CAGGAATCTGCCAGTTCCAGCGACTTTTCCAGCTCATCCGATCGCTGCTC
CTCCTTCTCAAACATTATCTCCAGCTTGGAGCAGTGCTGCCATCCCGCCA
TCACAAGCTCTCTACTCAGTCCATGCGGATTAAGATCGTTCAAATAGAGA
CCGATTCCATGCAGCTCATCGAGATTTTCGATTAGAGGACTGCACAGGAA
GATCAGCGAGTCCACATCTTTGATATAGAACATTTGTCCCTTTCACAGGA
TAGATCGGAGGCCCACCGAATGGCGTCTCTGTCCCGTGGCGGGATCGATT
TCGTCCT
BS07533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14886-PA | 2010 | Gyc-89Db-RA | 1070..2010 | 957..17 | 4655 | 99.7 | Minus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 1126..1421 | 892..597 | 1155 | 95.6 | Minus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 1126..1421 | 892..597 | 1155 | 95.6 | Minus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 1582..1709 | 436..309 | 565 | 97.6 | Minus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 1582..1709 | 436..309 | 565 | 97.6 | Minus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 1795..1880 | 223..138 | 330 | 95.3 | Minus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 1795..1880 | 223..138 | 330 | 95.3 | Minus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 1946..1982 | 72..36 | 135 | 94.5 | Minus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 1946..1982 | 72..36 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2784 | CG14886-RA | 1610..2552 | 957..15 | 4685 | 99.8 | Minus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 1357..2229 | 892..20 | 2580 | 86.5 | Minus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 1292..2164 | 892..20 | 2580 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16479896..16480838 | 957..15 | 4685 | 99.8 | Minus |
| 3R | 32079331 | 3R | 16474495..16475367 | 892..20 | 2565 | 86.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:52:03 has no hits.
BS07533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:36 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14886-PA | 1070..2010 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:35 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14886-PA | 1070..2010 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:42 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 1610..2554 | 12..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:32 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 1610..2554 | 12..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:32 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16479896..16480840 | 12..957 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:42 Download gff for
BS07533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12305618..12306562 | 12..957 | 99 | | Minus |
BS07533.5prime Sequence
922 bp (867 high quality bases) assembled on 2006-01-06
> BS07533.5prime
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTTCAGTGCCGTCGTCCC
AGGACACTCAGATCCAATGGGAGACCATCTGCNAATGCGTACAGTTCTCT
TCGAGTTTGAGCTCATCGGTAC
BS07533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14886-PA | 2010 | Gyc-89Db-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 161..312 | 177..328 | 710 | 98.6 | Plus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 161..312 | 177..328 | 710 | 98.6 | Plus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 319..377 | 335..393 | 270 | 98.3 | Plus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 319..377 | 335..393 | 270 | 98.3 | Plus |
| CG14886-PA | 2010 | Gyc-89Db-RA | 864..903 | 878..917 | 181 | 97.5 | Plus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 103..146 | 119..162 | 170 | 95.4 | Plus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 103..146 | 119..162 | 170 | 95.4 | Plus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 529..621 | 545..637 | 165 | 87 | Plus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 529..621 | 545..637 | 165 | 87 | Plus |
| CG14885-PB | 2004 | Gyc-89Da-RB | 412..456 | 428..472 | 150 | 93.3 | Plus |
| CG14885-PC | 2004 | Gyc-89Da-RC | 412..456 | 428..472 | 150 | 93.3 | Plus |
| CG14886-PA | 2010 | Gyc-89Db-RA | 836..863 | 851..878 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2784 | CG14886-RA | 540..1448 | 16..922 | 4439 | 99.3 | Plus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 231..1064 | 16..849 | 2190 | 84.2 | Plus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 166..999 | 16..849 | 2190 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16478826..16479734 | 16..922 | 4389 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16473369..16474202 | 16..849 | 2190 | 84.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:07:26 has no hits.
BS07533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:37 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14886-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:36 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14886-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:55 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1448 | 9..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:34 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1448 | 9..922 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:34 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16478823..16479734 | 9..922 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:55 Download gff for
BS07533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12304545..12305456 | 9..922 | 98 | | Plus |
BS07533.complete Sequence
2042 bp assembled on 2010-05-10
GenBank Submission: KX806285
> BS07533.complete
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCC
AAGGACACTCAGATCCAATGGGAGACCATTCTGCAAATGCGTACAGTTCT
CTTCGAGTTTGAGCTCATCCGTACGGGTCACAATCGTGCCGCCTATGATG
CGGCCTTGAACTTTGACTTTGAAAACTTTGATGAAGCCAGCAGCCTGAAC
GAGGCGCAGGCCATGGCTTTGGCCAGTGCCAAGGAGTTTAGTGCGGAGAA
CGCCAAGGAAGAGGCAGCAGCGGCAGCCACCTCCAAGGACGAAATCGATC
CCGCCACGGGACAGAGACGCCATTCGGTGGGCCTCCGATCTATCCTGTTG
AAGGGACAAATGTTCTATATCAAAGATGTGGACTCGCTGATCTTCCTGTG
CAGTCCTCTAATCGAAAATCTCGATGAGCTGCATGGAATCGGTCTCTATT
TGAACGATCTTAATCCGCATGGACTGAGTAGAGAGCTTGTGATGGCGGGA
TGGCAGCACTGCTCCAAGCTGGAGATAATGTTTGAGAAGGAGGAGCAGCG
ATCGGATGAGCTGGAAAAGTCGCTGGAACTGGCAGATTCCTGGAAGCGGC
AGGGAGATGAGCTACTGTATTCCATGATACCGCGACCCATTGCCGAGCGA
ATGAGAAAGAGCGAGGAGCACGTGTGTCAGAGTTTCGAGGAGGTATCCGT
CATTTTCATCGAGGTAATGAATATCTATGACAGTGGGTCCAACAACATCC
AGGATGCCATGCAGGCGGTGACCACCTTAAACAAAGTGTTTTCGGCATTG
GACGAAGAGATCATTTCCCCGTTTGTTTACAAAGTGGAGACCGTGGGCAT
GGTTTACATGGCTGTTTCGGGTGCTCCTGATGTGAATCCCCTGCATGCCG
AACACGCCTGCGATTTGGCCTTAAGGGTGATGAAGAAGGTCAAAGCCCAT
GCTCTTCCCGGGGTGGCTATACGGGTGGGCATTAACTCGGGACCCGTCGT
CGCCGGCGTGGTTGGGATGAAGGTTCCTCGATACTGTCTCTTTGGAGACA
CCGTTAACACCGCCTCGCGAATGGAGAGCAGCAGCGATCCCTGGATGATC
CAGCTGTCCAACTATACTGCGCTGAAGGTGCAAAAGGTGGGCTATAAGGT
TGAAGCGCGGGGATTTGTCAAGGTCAAGGGCAAGGGCGAGATGGAGACCT
ACTGGCTTTTGGAGGGACCAGAGTAGAAGCTTTCTAGACCAT
BS07533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2010 | CG14886-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
| Gyc-89Da-RC | 2004 | CG14885-PC | 1117..1998 | 1142..2023 | 2595 | 86.3 | Plus |
| Gyc-89Da-RB | 2004 | CG14885-PB | 1117..1998 | 1142..2023 | 2595 | 86.3 | Plus |
| Gyc-89Da-RC | 2004 | CG14885-PC | 1..965 | 17..981 | 2320 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2784 | CG14886-RA | 540..2552 | 16..2028 | 10065 | 100 | Plus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 1348..2229 | 1142..2023 | 2595 | 86.3 | Plus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 1283..2164 | 1142..2023 | 2595 | 86.3 | Plus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 231..1196 | 16..981 | 2325 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16478826..16480838 | 16..2028 | 10065 | 100 | Plus |
| 3R | 32079331 | 3R | 16474486..16475367 | 1142..2023 | 2595 | 86.3 | Plus |
| 3R | 32079331 | 3R | 16473369..16474334 | 16..981 | 2325 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:43:08 has no hits.
BS07533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:04 Download gff for
BS07533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 280..2289 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:50 Download gff for
BS07533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 541..2550 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:40 Download gff for
BS07533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 541..2550 | 17..2026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:40 Download gff for
BS07533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16478827..16480836 | 17..2026 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:50 Download gff for
BS07533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12304549..12306558 | 17..2026 | 100 | | Plus |
BS07533.pep Sequence
Translation from 16 to 2025
> BS07533.pep
MYGMLYESVQHYIQQEYGMETWRKVCQIVDCKHQSFKTHQIYPDKLMPDF
AAALSASTGESFDFCMNFFGRCFVRFFSNFGYDKMIRSTGRYFCDFLQSI
DNIHVQMRFTYPKMKSPSMQLTNMDDDGAVILYRSGRTGMSKYLIGQMTE
VAKEFYGLDMTAYVLESQNDICGGTAGPIKLTEGPLTVIVKYRLDFDNRD
YMAKRVNVIAHPSQLKMPSVDLNVFLELFPFTIVLDHDMKITLAGEKIVE
TWILHNPGVNPKTFIGSHILERFKCRRPKDTQIQWETILQMRTVLFEFEL
IRTGHNRAAYDAALNFDFENFDEASSLNEAQAMALASAKEFSAENAKEEA
AAAATSKDEIDPATGQRRHSVGLRSILLKGQMFYIKDVDSLIFLCSPLIE
NLDELHGIGLYLNDLNPHGLSRELVMAGWQHCSKLEIMFEKEEQRSDELE
KSLELADSWKRQGDELLYSMIPRPIAERMRKSEEHVCQSFEEVSVIFIEV
MNIYDSGSNNIQDAMQAVTTLNKVFSALDEEIISPFVYKVETVGMVYMAV
SGAPDVNPLHAEHACDLALRVMKKVKAHALPGVAIRVGINSGPVVAGVVG
MKVPRYCLFGDTVNTASRMESSSDPWMIQLSNYTALKVQKVGYKVEARGF
VKVKGKGEMETYWLLEGPE*
BS07533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-PA | 669 | CG14886-PA | 1..669 | 1..669 | 3491 | 100 | Plus |
| Gyc-89Da-PC | 667 | CG14885-PC | 1..666 | 1..669 | 3012 | 85.2 | Plus |
| Gyc-89Da-PB | 667 | CG14885-PB | 1..666 | 1..669 | 3012 | 85.2 | Plus |
| Gyc88E-PF | 1090 | CG4154-PF | 1..594 | 1..666 | 904 | 33.5 | Plus |
| Gyc88E-PE | 1097 | CG4154-PE | 1..594 | 1..666 | 904 | 33.5 | Plus |
