Clone BS07534 Report

Search the DGRC for BS07534

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG32549-RC
Protein status:BS07534.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07534.3prime Sequence

916 bp (891 high quality bases) assembled on 2006-01-06

> BS07534.3prime
ATGGTCTAGAAAGCTTCTAGTCTTCGGAGGCATCGCGCACAGCCTCTGTG
GAAGACTCGGCACCACTGGGTGTCTCCTCCTCCTCGGAATAGTCCTCGTC
ATGGGTGTGGGTCACCACGGTGGGCGTCGACGGACGAGTGTGCACAATGG
AGCTTGCGCGATGCAAGTCCTTGGGGTCCTTAACGTGCTCGGCGGTGCCC
GCCAAAATGCGAGCCGGCTCATCCGGCGAGGCAGCCACCGATGCGGCTCC
CGTAGCCGGAACAGGAACAGGGCCCAGTGGCGGAGGCGGCTGATGGGCCT
GATCATGGGCCACCGTCGACTCATGGGGCAGAAGCATGGCCGGAGCTCGG
AACATATACGAGAATGGGTAGTAAATGAGGTTGAGCAGGGTGGCCGCATA
GACGTCGGCATATCGCACCACCTGGCTGGAGAAGAAGGTCTGGCGCGAGC
CGGAGCGGAAGAGTGAGCCCATCATACCGTAGGACATGTCCATCTTGTGT
GTCACATCGCGGATGCACGTGCGCAGCTGCGAAATGTCCGGCTTGACCTT
GGCACTCGAGTCGAGATCCCTGTACAGGTCGCCCAGCTTGATGTCCAGGT
TCTGTAGCTCCGCAAACAGCTGGCACTCATCCGTCCAAACGTGCAGCTCC
CTCACCAATTCGGGCACAATTAGGAAGGTGCGCCAGCCTCGAATCTTCTT
CGATTTGAGAATATCGCCAAAAATGTGATCGCCCACATAGAGCACGTCCT
TGCCTTTGGCATTGATGAACTTGGTAAAGAGCTCGCAGGAGCCACCGGAA
TAAACCTGACCCGGCTGCAGGGGTCCAACGTGTGTGCCGATCTTCAGGCT
TCCGGTCTTCGTGTCCACCTGCCGCAGCACGGTGCCCTCGTCGAAGAAGA
GCGGCTTGCGGGCATC

BS07534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-PD 1746 CG32549-RD 847..1746 916..17 4500 100 Minus
CG32549-PE 1893 CG32549-RE 994..1893 916..17 4500 100 Minus
CG32549-PC 1527 CG32549-RC 628..1527 916..17 4500 100 Minus
CG32549-PA 2148 CG32549-RA 1249..2148 916..17 4500 100 Minus
CG32549-PB 1839 CG32549-RB 940..1839 916..17 4500 100 Minus
CG32549-PF 1839 CG32549-RF 940..1839 916..17 4500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-RH 2677 CG32549-RH 1539..2439 916..16 4505 100 Minus
CG32549-RG 2806 CG32549-RG 1668..2568 916..16 4505 100 Minus
CG32549-RF 2652 CG32549-RF 1456..2356 916..16 4505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18390998..18391759 155..916 3810 100 Plus
X 23542271 X 18390794..18390932 16..154 695 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:11:27 has no hits.

BS07534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:38 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-PA 1249..2148 17..916 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:38 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-PF 940..1839 17..916 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:28 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 1456..2356 16..916 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:04 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 1456..2356 16..916 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:04 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18390794..18390932 16..154 100 <- Plus
X 18390998..18391759 155..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:28 Download gff for BS07534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18284827..18284965 16..154 100 <- Plus
arm_X 18285031..18285792 155..916 100   Plus

BS07534.5prime Sequence

961 bp (859 high quality bases) assembled on 2006-01-06

> BS07534.5prime
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTTTGGACGGATGAGTGCCAGCTGTTTGCGG
AGCTACAGAAC

BS07534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-PD 1746 CG32549-RD 219..1164 16..961 4730 100 Plus
CG32549-PE 1893 CG32549-RE 366..1311 16..961 4730 100 Plus
CG32549-PA 2148 CG32549-RA 621..1566 16..961 4730 100 Plus
CG32549-PB 1839 CG32549-RB 312..1257 16..961 4730 100 Plus
CG32549-PF 1839 CG32549-RF 312..1257 16..961 4730 100 Plus
CG32549-PC 1527 CG32549-RC 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-RH 2677 CG32549-RH 911..1856 16..961 4730 100 Plus
CG32549-RG 2806 CG32549-RG 1040..1985 16..961 4730 100 Plus
CG32549-RF 2652 CG32549-RF 828..1773 16..961 4730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18391442..18391968 961..435 2635 100 Minus
X 23542271 X 18392549..18392701 168..16 765 100 Minus
X 23542271 X 18392335..18392481 315..169 735 100 Minus
X 23542271 X 18392040..18392161 436..315 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:56:48 has no hits.

BS07534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:39 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-PA 616..1566 11..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:39 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-PF 307..1257 11..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:23 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 823..1773 11..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:43 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 823..1773 11..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:43 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18392549..18392706 11..168 98   Minus
X 18391442..18391966 437..961 100 <- Minus
X 18392040..18392160 316..436 100 <- Minus
X 18392335..18392481 169..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:23 Download gff for BS07534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18285475..18285999 437..961 100 <- Minus
arm_X 18286073..18286193 316..436 100 <- Minus
arm_X 18286368..18286514 169..315 100 <- Minus
arm_X 18286582..18286739 11..168 98   Minus

BS07534.complete Sequence

1559 bp (1559 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635896

> BS07534.complete
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTTTGGACGGATGAGTGCCAGCTGTTTGCGG
AGCTACAGAACCTGGACATCAAGCTGGGCGACCTGTACAGGGATCTCGAC
TCGAGTGCCAAGGTCAAGCCGGACATTTCGCAGCTGCGCACGTGCATCCG
CGATGTGACACACAAGATGGACATGTCCTACGGTATGATGGGCTCACTCT
TCCGCTCCGGCTCGCGCCAGACCTTCTTCTCCAGCCAGGTGGTGCGATAT
GCCGACGTCTATGCGGCCACCCTGCTCAACCTCATTTACTACCCATTCTC
GTATATGTTCCGAGCTCCGGCCATGCTTCTGCCCCATGAGTCGACGGTGG
CCCATGATCAGGCCCATCAGCCGCCTCCGCCACTGGGCCCTGTTCCTGTT
CCGGCTACGGGAGCCGCATCGGTGGCTGCCTCGCCGGATGAGCCGGCTCG
CATTTTGGCGGGCACCGCCGAGCACGTTAAGGACCCCAAGGACTTGCATC
GCGCAAGCTCCATTGTGCACACTCGTCCGTCGACGCCCACCGTGGTGACC
CACACCCATGACGAGGACTATTCCGAGGAGGAGGAGACACCCAGTGGTGC
CGAGTCTTCCACAGAGGCTGTGCGCGATGCCTCCGAAGACTAGAAGCTTT
CTAGACCAT

BS07534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-RH 2130 CG32549-PH 603..2130 16..1543 7640 100 Plus
CG32549-RG 2130 CG32549-PG 603..2130 16..1543 7640 100 Plus
CG32549-RF 1839 CG32549-PF 312..1839 16..1543 7640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-RH 2677 CG32549-RH 911..2439 16..1544 7645 100 Plus
CG32549-RG 2806 CG32549-RG 1040..2568 16..1544 7645 100 Plus
CG32549-RF 2652 CG32549-RF 828..2356 16..1544 7645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18390998..18391968 1405..435 4855 100 Minus
X 23542271 X 18392549..18392701 168..16 765 100 Minus
X 23542271 X 18392335..18392481 315..169 735 100 Minus
X 23542271 X 18390794..18390932 1544..1406 695 100 Minus
X 23542271 X 18392040..18392161 436..315 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:22:05 has no hits.

BS07534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:27 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG32549-RA 616..2148 11..1543 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:26 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG32549-RC 57..1590 11..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:05 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 829..2355 17..1543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:27 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG32549-RC 57..1590 11..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:48 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
CG32549-RF 829..2355 17..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:48 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
X 18390795..18390932 1406..1543 100 <- Minus
X 18390998..18391966 437..1405 100 <- Minus
X 18392040..18392160 316..436 100 <- Minus
X 18392335..18392481 169..315 100 <- Minus
X 18392549..18392700 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:05 Download gff for BS07534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18284828..18284965 1406..1543 100 <- Minus
arm_X 18285031..18285999 437..1405 100 <- Minus
arm_X 18286073..18286193 316..436 100 <- Minus
arm_X 18286368..18286514 169..315 100 <- Minus
arm_X 18286582..18286733 17..168 100   Minus

BS07534.pep Sequence

Translation from 16 to 1542

> BS07534.pep
MGYPKEILQFEYDPTFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFIK
HHQVYELYPNKFLKLDESRVYVLNTLFNLPETYLLACLVDFLTNSSDFVR
VERGIKAGDLLFTYKSIFQDVRRAVDWVHSDGDLKRRTTQNMAHYVKKDE
RLPTVLSRIRESGAKLFMLTNSDYTYTNEIMTYLFDFPHGATPDEPHRDW
KTYFDVIVVDARKPLFFDEGTVLRQVDTKTGSLKIGTHVGPLQPGQVYSG
GSCELFTKFINAKGKDVLYVGDHIFGDILKSKKIRGWRTFLIVPELVREL
HVWTDECQLFAELQNLDIKLGDLYRDLDSSAKVKPDISQLRTCIRDVTHK
MDMSYGMMGSLFRSGSRQTFFSSQVVRYADVYAATLLNLIYYPFSYMFRA
PAMLLPHESTVAHDQAHQPPPPLGPVPVPATGAASVAASPDEPARILAGT
AEHVKDPKDLHRASSIVHTRPSTPTVVTHTHDEDYSEEEETPSGAESSTE
AVRDASED*

BS07534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32549-PH 709 CG32549-PH 202..709 1..508 2689 100 Plus
CG32549-PG 709 CG32549-PG 202..709 1..508 2689 100 Plus
CG32549-PF 612 CG32549-PF 105..612 1..508 2689 100 Plus
CG32549-PB 612 CG32549-PB 105..612 1..508 2689 100 Plus
CG32549-PE 630 CG32549-PE 123..630 1..508 2689 100 Plus