Clone Sequence Records
BS07534.3prime Sequence
916 bp (891 high quality bases) assembled on 2006-01-06
> BS07534.3prime
ATGGTCTAGAAAGCTTCTAGTCTTCGGAGGCATCGCGCACAGCCTCTGTG
GAAGACTCGGCACCACTGGGTGTCTCCTCCTCCTCGGAATAGTCCTCGTC
ATGGGTGTGGGTCACCACGGTGGGCGTCGACGGACGAGTGTGCACAATGG
AGCTTGCGCGATGCAAGTCCTTGGGGTCCTTAACGTGCTCGGCGGTGCCC
GCCAAAATGCGAGCCGGCTCATCCGGCGAGGCAGCCACCGATGCGGCTCC
CGTAGCCGGAACAGGAACAGGGCCCAGTGGCGGAGGCGGCTGATGGGCCT
GATCATGGGCCACCGTCGACTCATGGGGCAGAAGCATGGCCGGAGCTCGG
AACATATACGAGAATGGGTAGTAAATGAGGTTGAGCAGGGTGGCCGCATA
GACGTCGGCATATCGCACCACCTGGCTGGAGAAGAAGGTCTGGCGCGAGC
CGGAGCGGAAGAGTGAGCCCATCATACCGTAGGACATGTCCATCTTGTGT
GTCACATCGCGGATGCACGTGCGCAGCTGCGAAATGTCCGGCTTGACCTT
GGCACTCGAGTCGAGATCCCTGTACAGGTCGCCCAGCTTGATGTCCAGGT
TCTGTAGCTCCGCAAACAGCTGGCACTCATCCGTCCAAACGTGCAGCTCC
CTCACCAATTCGGGCACAATTAGGAAGGTGCGCCAGCCTCGAATCTTCTT
CGATTTGAGAATATCGCCAAAAATGTGATCGCCCACATAGAGCACGTCCT
TGCCTTTGGCATTGATGAACTTGGTAAAGAGCTCGCAGGAGCCACCGGAA
TAAACCTGACCCGGCTGCAGGGGTCCAACGTGTGTGCCGATCTTCAGGCT
TCCGGTCTTCGTGTCCACCTGCCGCAGCACGGTGCCCTCGTCGAAGAAGA
GCGGCTTGCGGGCATC
BS07534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PD | 1746 | CG32549-RD | 847..1746 | 916..17 | 4500 | 100 | Minus |
CG32549-PE | 1893 | CG32549-RE | 994..1893 | 916..17 | 4500 | 100 | Minus |
CG32549-PC | 1527 | CG32549-RC | 628..1527 | 916..17 | 4500 | 100 | Minus |
CG32549-PA | 2148 | CG32549-RA | 1249..2148 | 916..17 | 4500 | 100 | Minus |
CG32549-PB | 1839 | CG32549-RB | 940..1839 | 916..17 | 4500 | 100 | Minus |
CG32549-PF | 1839 | CG32549-RF | 940..1839 | 916..17 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 1539..2439 | 916..16 | 4505 | 100 | Minus |
CG32549-RG | 2806 | CG32549-RG | 1668..2568 | 916..16 | 4505 | 100 | Minus |
CG32549-RF | 2652 | CG32549-RF | 1456..2356 | 916..16 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18390998..18391759 | 155..916 | 3810 | 100 | Plus |
X | 23542271 | X | 18390794..18390932 | 16..154 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:11:27 has no hits.
BS07534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:38 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PA | 1249..2148 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:38 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PF | 940..1839 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:40:28 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 1456..2356 | 16..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:04 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 1456..2356 | 16..916 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:04 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18390794..18390932 | 16..154 | 100 | <- | Plus |
X | 18390998..18391759 | 155..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:40:28 Download gff for
BS07534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18284827..18284965 | 16..154 | 100 | <- | Plus |
arm_X | 18285031..18285792 | 155..916 | 100 | | Plus |
BS07534.5prime Sequence
961 bp (859 high quality bases) assembled on 2006-01-06
> BS07534.5prime
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTTTGGACGGATGAGTGCCAGCTGTTTGCGG
AGCTACAGAAC
BS07534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PD | 1746 | CG32549-RD | 219..1164 | 16..961 | 4730 | 100 | Plus |
CG32549-PE | 1893 | CG32549-RE | 366..1311 | 16..961 | 4730 | 100 | Plus |
CG32549-PA | 2148 | CG32549-RA | 621..1566 | 16..961 | 4730 | 100 | Plus |
CG32549-PB | 1839 | CG32549-RB | 312..1257 | 16..961 | 4730 | 100 | Plus |
CG32549-PF | 1839 | CG32549-RF | 312..1257 | 16..961 | 4730 | 100 | Plus |
CG32549-PC | 1527 | CG32549-RC | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 911..1856 | 16..961 | 4730 | 100 | Plus |
CG32549-RG | 2806 | CG32549-RG | 1040..1985 | 16..961 | 4730 | 100 | Plus |
CG32549-RF | 2652 | CG32549-RF | 828..1773 | 16..961 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18391442..18391968 | 961..435 | 2635 | 100 | Minus |
X | 23542271 | X | 18392549..18392701 | 168..16 | 765 | 100 | Minus |
X | 23542271 | X | 18392335..18392481 | 315..169 | 735 | 100 | Minus |
X | 23542271 | X | 18392040..18392161 | 436..315 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:56:48 has no hits.
BS07534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:39 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PA | 616..1566 | 11..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:39 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PF | 307..1257 | 11..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:23 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 823..1773 | 11..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:43 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 823..1773 | 11..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:43 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18392549..18392706 | 11..168 | 98 | | Minus |
X | 18391442..18391966 | 437..961 | 100 | <- | Minus |
X | 18392040..18392160 | 316..436 | 100 | <- | Minus |
X | 18392335..18392481 | 169..315 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:23 Download gff for
BS07534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18285475..18285999 | 437..961 | 100 | <- | Minus |
arm_X | 18286073..18286193 | 316..436 | 100 | <- | Minus |
arm_X | 18286368..18286514 | 169..315 | 100 | <- | Minus |
arm_X | 18286582..18286739 | 11..168 | 98 | | Minus |
BS07534.complete Sequence
1559 bp (1559 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635896
> BS07534.complete
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTTTGGACGGATGAGTGCCAGCTGTTTGCGG
AGCTACAGAACCTGGACATCAAGCTGGGCGACCTGTACAGGGATCTCGAC
TCGAGTGCCAAGGTCAAGCCGGACATTTCGCAGCTGCGCACGTGCATCCG
CGATGTGACACACAAGATGGACATGTCCTACGGTATGATGGGCTCACTCT
TCCGCTCCGGCTCGCGCCAGACCTTCTTCTCCAGCCAGGTGGTGCGATAT
GCCGACGTCTATGCGGCCACCCTGCTCAACCTCATTTACTACCCATTCTC
GTATATGTTCCGAGCTCCGGCCATGCTTCTGCCCCATGAGTCGACGGTGG
CCCATGATCAGGCCCATCAGCCGCCTCCGCCACTGGGCCCTGTTCCTGTT
CCGGCTACGGGAGCCGCATCGGTGGCTGCCTCGCCGGATGAGCCGGCTCG
CATTTTGGCGGGCACCGCCGAGCACGTTAAGGACCCCAAGGACTTGCATC
GCGCAAGCTCCATTGTGCACACTCGTCCGTCGACGCCCACCGTGGTGACC
CACACCCATGACGAGGACTATTCCGAGGAGGAGGAGACACCCAGTGGTGC
CGAGTCTTCCACAGAGGCTGTGCGCGATGCCTCCGAAGACTAGAAGCTTT
CTAGACCAT
BS07534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2130 | CG32549-PH | 603..2130 | 16..1543 | 7640 | 100 | Plus |
CG32549-RG | 2130 | CG32549-PG | 603..2130 | 16..1543 | 7640 | 100 | Plus |
CG32549-RF | 1839 | CG32549-PF | 312..1839 | 16..1543 | 7640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 911..2439 | 16..1544 | 7645 | 100 | Plus |
CG32549-RG | 2806 | CG32549-RG | 1040..2568 | 16..1544 | 7645 | 100 | Plus |
CG32549-RF | 2652 | CG32549-RF | 828..2356 | 16..1544 | 7645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18390998..18391968 | 1405..435 | 4855 | 100 | Minus |
X | 23542271 | X | 18392549..18392701 | 168..16 | 765 | 100 | Minus |
X | 23542271 | X | 18392335..18392481 | 315..169 | 735 | 100 | Minus |
X | 23542271 | X | 18390794..18390932 | 1544..1406 | 695 | 100 | Minus |
X | 23542271 | X | 18392040..18392161 | 436..315 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:22:05 has no hits.
BS07534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:27 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RA | 616..2148 | 11..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:26 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RC | 57..1590 | 11..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:05 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 829..2355 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:27 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RC | 57..1590 | 11..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:48 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 829..2355 | 17..1543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:48 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18390795..18390932 | 1406..1543 | 100 | <- | Minus |
X | 18390998..18391966 | 437..1405 | 100 | <- | Minus |
X | 18392040..18392160 | 316..436 | 100 | <- | Minus |
X | 18392335..18392481 | 169..315 | 100 | <- | Minus |
X | 18392549..18392700 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:05 Download gff for
BS07534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18284828..18284965 | 1406..1543 | 100 | <- | Minus |
arm_X | 18285031..18285999 | 437..1405 | 100 | <- | Minus |
arm_X | 18286073..18286193 | 316..436 | 100 | <- | Minus |
arm_X | 18286368..18286514 | 169..315 | 100 | <- | Minus |
arm_X | 18286582..18286733 | 17..168 | 100 | | Minus |
BS07534.pep Sequence
Translation from 16 to 1542
> BS07534.pep
MGYPKEILQFEYDPTFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFIK
HHQVYELYPNKFLKLDESRVYVLNTLFNLPETYLLACLVDFLTNSSDFVR
VERGIKAGDLLFTYKSIFQDVRRAVDWVHSDGDLKRRTTQNMAHYVKKDE
RLPTVLSRIRESGAKLFMLTNSDYTYTNEIMTYLFDFPHGATPDEPHRDW
KTYFDVIVVDARKPLFFDEGTVLRQVDTKTGSLKIGTHVGPLQPGQVYSG
GSCELFTKFINAKGKDVLYVGDHIFGDILKSKKIRGWRTFLIVPELVREL
HVWTDECQLFAELQNLDIKLGDLYRDLDSSAKVKPDISQLRTCIRDVTHK
MDMSYGMMGSLFRSGSRQTFFSSQVVRYADVYAATLLNLIYYPFSYMFRA
PAMLLPHESTVAHDQAHQPPPPLGPVPVPATGAASVAASPDEPARILAGT
AEHVKDPKDLHRASSIVHTRPSTPTVVTHTHDEDYSEEEETPSGAESSTE
AVRDASED*
BS07534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PH | 709 | CG32549-PH | 202..709 | 1..508 | 2689 | 100 | Plus |
CG32549-PG | 709 | CG32549-PG | 202..709 | 1..508 | 2689 | 100 | Plus |
CG32549-PF | 612 | CG32549-PF | 105..612 | 1..508 | 2689 | 100 | Plus |
CG32549-PB | 612 | CG32549-PB | 105..612 | 1..508 | 2689 | 100 | Plus |
CG32549-PE | 630 | CG32549-PE | 123..630 | 1..508 | 2689 | 100 | Plus |