Clone Sequence Records
BS07535.3prime Sequence
863 bp (809 high quality bases) assembled on 2006-01-06
> BS07535.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGGATGGATTCTCTTCGTTGGTGGGA
ACGGGCGCTATTTCCGTCTTGGTCTCCACAACGGACTCGGGTTTGGCTTC
CGGTTCCGGTTCAGCGGAAGCAGAAGTGGCTGCCACCGGGGCAGCCTTGG
CCAGCTCTCCGGGAGATGGCTTCTTGGGCGCCGGCTTGCCGAATATGGCC
TTCTCGATGCCCAAAATGGGTGCCTCGAAGGCCAAGGTGGCGAAGATCGA
GGCGGTGAGGGTGATGCCAAAGTCATGCCACCAGCGGAGGATCGCATCGT
AGTTGGAGAAGTGGGTATCTGTCTGCAGACGAGCGGCGTTGACCAGCTGG
ACAATGCGATGAATGACGTACATACAGTAACACAGTCGGCTGAAGCCCGT
GAAGAATCCCCAGGACAAGAAGTCATTGACCAGACCGCCGTGACCATTGT
AGCAGGCCCAAACGATCCAACCAATGGACAGAGCCCACGACGTTCTGCTC
AGGGGCTCAAAGAATGCGCCTTCGATCAGGGGCGAGTCGGGAGTATCCGG
CAGGATGCGCCAGTATGGTCCCCACATGCAGGCCAACATCGTTCCGAAGG
CCACGAACCAACCGGTCAGCACCAGTGGCTTGGACATCGGAATCTGGCGT
CCACGGTTACGGGTAAACAGGAAGTAGCCAAAGATCACGCCAATCAACCA
AGTGGGAATTCGAGTGTGCGTTGGATAGTAGGTCAACCGCTGTCGCAGAT
CCACTTGATCGTCCTGCACGCGGAAAAGCGTAAAGTCATTCAACATAAAG
GTGGCGAAAGTTCCACCCAAGCACAAGATCAGTACGATCACGATGGGCAC
CAAGGCCCTCTTT
BS07535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PA | 2229 | CG3106-RA | 1383..2229 | 863..17 | 4210 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 1635..2482 | 863..16 | 4225 | 99.9 | Minus |
| CG3106-RA | 2443 | CG3106-RA | 1490..2337 | 863..16 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9659543..9660113 | 293..863 | 2840 | 99.8 | Plus |
| X | 23542271 | X | 9659202..9659479 | 16..293 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:05:44 has no hits.
BS07535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:40 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1383..2229 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:41 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1383..2229 | 17..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:19 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 1490..2339 | 12..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:31 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 1490..2339 | 12..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:31 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9659198..9659478 | 12..292 | 99 | <- | Plus |
| X | 9659543..9660113 | 293..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:19 Download gff for
BS07535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9553231..9553511 | 12..292 | 99 | <- | Plus |
| arm_X | 9553576..9554146 | 293..863 | 99 | | Plus |
BS07535.5prime Sequence
908 bp (820 high quality bases) assembled on 2006-01-06
> BS07535.5prime
GAAGTTATCAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGC
TGCTGATCGCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTG
CTCACCGGTCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTT
TACCTTGGCCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGG
TGATTCAAACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGG
GATATCAACCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACT
GGAATTTCCCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGAC
ACACCATCAGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACC
CACACCACAGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAAC
TACGTTTTATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTA
GCTATAAGCAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCA
AAGACATGCAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCAC
CCACTTTTATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGG
AAGCGCGCTGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATA
TTCGCAATCATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAG
TGTCTACGATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGC
TGATCGCGTTTTCTGTACTGACAAATGCCCCCAAAATTTTCACCGTTAAG
AAGGTGAACATCCCAATGTGATTCACTGCCTAAATGGATTGCGTTGCTTT
AGTATGAT
BS07535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PA | 2229 | CG3106-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
| CG3106-PA | 2229 | CG3106-RA | 845..893 | 860..908 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..1145 | 17..908 | 4440 | 99.9 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..1000 | 17..908 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9661022..9661424 | 708..306 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 305..17 | 1445 | 100 | Minus |
| X | 23542271 | X | 9660689..9660817 | 908..781 | 595 | 99.2 | Minus |
| X | 23542271 | X | 9660881..9660954 | 782..709 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:10:32 has no hits.
BS07535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:41 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:42 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1..893 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:55:58 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1000 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:41 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..1000 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:41 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9660689..9660815 | 783..908 | 99 | <- | Minus |
| X | 9660881..9660954 | 709..782 | 100 | <- | Minus |
| X | 9661022..9661424 | 306..708 | 100 | <- | Minus |
| X | 9662363..9662651 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:55:58 Download gff for
BS07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9554722..9554848 | 783..908 | 99 | <- | Minus |
| arm_X | 9554914..9554987 | 709..782 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 306..708 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 17..305 | 100 | | Minus |
BS07535.complete Sequence
2261 bp assembled on 2010-05-10
GenBank Submission: KX801064
> BS07535.complete
GAAGTTATCAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGC
TGCTGATCGCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTG
CTCACCGGTCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTT
TACCTTGGCCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGG
TGATTCAAACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGG
GATATCAACCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACT
GGAATTTCCCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGAC
ACACCATCAGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACC
CACACCACAGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAAC
TACGTTTTATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTA
GCTATAAGCAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCA
AAGACATGCAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCAC
CCACTTTTATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGG
AAGCGCGCTGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATA
TTCGCAATCATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAG
TGTCTACGATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGC
TGATCGCGTTTTCTGTACTGACAAATGCCCCCAAAATTTTCACCGTTAAG
AAGGTGAACAATCCCAATGTGATTCACTGCCTAAATGGATTGCGTTGCTT
TAGTATGATGTGGGTGGTATTTGGCCACGGCTATATGACCTTCTACGATC
TGCCACACATCAACAAAAACAAATTCTACACCTGGGTGCAGACCCCCTAT
TCGATGTTGGTCCAGAACGGCTCGCTTTGCGTGGACACGTTCTTCTTCAT
GTCCGGTCTGCTGATGTGCTGGGGTGCCTTCCGTGAAATGGAGCGCACCA
AGGGCAAGCTAAACATCCCGATGATGTATTTCCATCGCTACATTCGACTT
ACGCCAGTGGTGGCCGTCGTCGTTCTGTACATTATGTCACTGTATAAGTA
CTCGGGCGCCGGACCCATGTGGTTCAAGCTGGGCACCCAGGATAAGAGGT
GTGCCGACACCTGGTGGGCAACGCTGATCTACGTCCAGAACTATGCCTTC
CCCTACAGCATTTGCATATCTCAATCGTGGTATTTGGCCGTGGACACCCA
GCTGTACTTCCTTTCGCCGCTGTTCCTCATTCCGCTGTGGAAATGGGGAA
AGAAGGCCTTGGTGCCCATCGTGATCGTACTGATCTTGTGCTTGGGTGGA
ACTTTCGCCACCTTTATGTTGAATGACTTTACGCTTTTCCGCGTGCAGGA
CGATCAAGTGGATCTGCGACAGCGGTTGACCTACTATCCAACGCACACTC
GAATTCCCACTTGGTTGATTGGCGTGATCTTTGGCTACTTCCTGTTTACC
CGTAACCGTGGACGCCAGATTCCGATGTCCAAGCCACTGGTGCTGACCGG
TTGGTTCGTGGCCTTCGGAACGATGTTGGCCTGCATGTGGGGACCATACT
GGCGCATCCTGCCGGATACTCCCGACTCGCCCCTGATCGAAGGCGCATTC
TTTGAGCCCCTGAGCAGAACGTCGTGGGCTCTGTCCATTGGTTGGATCGT
TTGGGCCTGCTACAATGGTCACGGCGGTCTGGTCAATGACTTCTTGTCCT
GGGGATTCTTCACGGGCTTCAGCCGACTGTGTTACTGTATGTACGTCATT
CATCGCATTGTCCAGCTGGTCAACGCCGCTCGTCTGCAGACAGATACCCA
CTTCTCCAACTACGATGCGATCCTCCGCTGGTGGCATGACTTTGGCATCA
CCCTCACCGCCTCGATCTTCGCCACCTTGGCCTTCGAGGCACCCATTTTG
GGCATCGAGAAGGCCATATTCGGCAAGCCGGCGCCCAAGAAGCCATCTCC
CGGAGAGCTGGCCAAGGCTGCCCCGGTGGCAGCCACTTCTGCTTCCGCTG
AACCGGAACCGGAAGCCAAACCCGAGTCCGTTGTGGAGACCAAGACGGAA
ATAGCGCCCGTTCCCACCAACGAAGAGAATCCATCCAAGGCCTAGAAGCT
TTCTAGACCAT
BS07535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2229 | CG3106-PB | 1..2229 | 17..2245 | 11145 | 100 | Plus |
| CG3106-RA | 2229 | CG3106-PA | 1..2229 | 17..2245 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..2482 | 17..2246 | 11150 | 100 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..2337 | 17..2246 | 11150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9659543..9660199 | 1969..1313 | 3285 | 100 | Minus |
| X | 23542271 | X | 9660286..9660817 | 1312..781 | 2660 | 100 | Minus |
| X | 23542271 | X | 9661022..9661424 | 708..306 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 305..17 | 1445 | 100 | Minus |
| X | 23542271 | X | 9659202..9659479 | 2246..1969 | 1390 | 100 | Minus |
| X | 23542271 | X | 9660881..9660954 | 782..709 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:04 has no hits.
BS07535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:48 Download gff for
BS07535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 106..2334 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:35 Download gff for
BS07535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..2336 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:03 Download gff for
BS07535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..2336 | 17..2245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:03 Download gff for
BS07535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9659203..9659478 | 1970..2245 | 100 | <- | Minus |
| X | 9659543..9660199 | 1313..1969 | 100 | <- | Minus |
| X | 9660286..9660815 | 783..1312 | 100 | <- | Minus |
| X | 9660881..9660954 | 709..782 | 100 | <- | Minus |
| X | 9661022..9661424 | 306..708 | 100 | <- | Minus |
| X | 9662363..9662651 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:35 Download gff for
BS07535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9556396..9556684 | 17..305 | 100 | | Minus |
| arm_X | 9553236..9553511 | 1970..2245 | 100 | <- | Minus |
| arm_X | 9553576..9554232 | 1313..1969 | 100 | <- | Minus |
| arm_X | 9554319..9554848 | 783..1312 | 100 | <- | Minus |
| arm_X | 9554914..9554987 | 709..782 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 306..708 | 100 | <- | Minus |
BS07535.pep Sequence
Translation from 16 to 2244
> BS07535.pep
MMEHFGVLAVVLLIATAVGAQDTSSNYLLTGHSTPLASSFAHQFFTLASQ
SAELANRTNTQVIQTYEDRNYDDELCDRDINLIRDSINNLEEWALEFPDT
WGRLPMGLFWGHTISMGQYEECVAASSTHTTEIRGQYCLASLNITTFYQS
VKKRGEEFSRISYKQTDPEVFELGICVPKTCSAAKTEKLLKYAITHFYGQ
DVMESNYTMVTEARCKYDAPIELRGIDIFAIIFFSLIIFFMVASSVYDYI
QTRKGAPKKPLLIAFSVLTNAPKIFTVKKVNNPNVIHCLNGLRCFSMMWV
VFGHGYMTFYDLPHINKNKFYTWVQTPYSMLVQNGSLCVDTFFFMSGLLM
CWGAFREMERTKGKLNIPMMYFHRYIRLTPVVAVVVLYIMSLYKYSGAGP
MWFKLGTQDKRCADTWWATLIYVQNYAFPYSICISQSWYLAVDTQLYFLS
PLFLIPLWKWGKKALVPIVIVLILCLGGTFATFMLNDFTLFRVQDDQVDL
RQRLTYYPTHTRIPTWLIGVIFGYFLFTRNRGRQIPMSKPLVLTGWFVAF
GTMLACMWGPYWRILPDTPDSPLIEGAFFEPLSRTSWALSIGWIVWACYN
GHGGLVNDFLSWGFFTGFSRLCYCMYVIHRIVQLVNAARLQTDTHFSNYD
AILRWWHDFGITLTASIFATLAFEAPILGIEKAIFGKPAPKKPSPGELAK
AAPVAATSASAEPEPEAKPESVVETKTEIAPVPTNEENPSKA*
BS07535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PB | 742 | CG3106-PB | 1..742 | 1..742 | 3986 | 100 | Plus |
| CG3106-PA | 742 | CG3106-PA | 1..742 | 1..742 | 3986 | 100 | Plus |
| CG42329-PA | 691 | CG5156-PA | 30..663 | 50..695 | 1209 | 36.6 | Plus |
| CG14205-PA | 713 | CG14205-PA | 61..702 | 55..711 | 1145 | 35.9 | Plus |
| CG14219-PA | 724 | CG14219-PA | 12..707 | 11..725 | 1119 | 34.3 | Plus |
