Clone BS07537 Report

Search the DGRC for BS07537

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG15309-RA
Protein status:BS07537.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07537.3prime Sequence

375 bp (374 high quality bases) assembled on 2006-01-06

> BS07537.3prime
ATGGTCTAGAAAGCTTTCAGTCCCAGCCGTTCTCCTTGATCATGTGCGCC
AGCTCAATGATGAACTTGCCCTCCTTGTACTTTTGGCTGGACTCATAGGC
GTGCTCATATTTCCAGCCCAGCGGCGTCTTGCAGCACTCGCAGTAGATGT
CCGCCACCGCATGGAGGCCGGTCAGGAGCACACGCTCCTCCGTCTGGCCA
CAGGCCACGTTCACCACCGAGTTGAACAGATAGGCCGGTCCCTGACTGCC
CTGAAACGACTTCGATATGAGCTCGTCGTGGGAGGCGAGGTGGGCGCGGC
AGTGAACACATGAGTATGTCCGATTCGTGGACGGTAGATAGGCCTGAAAC
GTCTTCACCATGTCGACTGATAACT

BS07537.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-PA 345 CG15309-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-RE 3058 CG15309-RE 775..1120 361..16 1730 100 Minus
CG15309-RD 2877 CG15309-RD 594..939 361..16 1730 100 Minus
CG15309-RC 2606 CG15309-RC 323..668 361..16 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10207230..10207575 16..361 1730 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:06:32 has no hits.

BS07537.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:45 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:46 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:05 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 317..676 9..367 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:27 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 317..676 9..367 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:27 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10207222..10207581 9..367 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:05 Download gff for BS07537.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10101255..10101614 9..367 98   Plus

BS07537.5prime Sequence

375 bp (374 high quality bases) assembled on 2006-01-06

> BS07537.5prime
GAAGTTATCAGTCGACATGGTGAAGACGTTTCAGGCCTATCTACCGTCCA
CGAATCGGACATACTCATGTGTTCACTGCCGCGCCCACCTCGCCTCCCAC
GACGAGCTCATATCGAAGTCGTTTCAGGGCAGTCAGGGACCGGCCTATCT
GTTCAACTCGGTGGTGAACGTGGCCTGTGGCCAGACGGAGGAGCGTGTGC
TCCTGACCGGCCTCCATGCGGTGGCGGACATCTACTGCGAGTGCTGCAAG
ACGCCGCTGGGCTGGAAATATGAGCACGCCTATGAGTCCAGCCAAAAGTA
CAAGGAGGGCAAGTTCATCATTGAGCTGGCGCACATGATCAAGGAGAACG
GCTGGGACTGAAAGCTTTCTAGACC

BS07537.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-PA 345 CG15309-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-RE 3058 CG15309-RE 775..1120 17..362 1730 100 Plus
CG15309-RD 2877 CG15309-RD 594..939 17..362 1730 100 Plus
CG15309-RC 2606 CG15309-RC 323..668 17..362 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10207230..10207575 362..17 1730 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:20:07 has no hits.

BS07537.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:46 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:47 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:16 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 317..676 11..369 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:26 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 317..676 11..369 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:26 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10207222..10207581 11..369 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:16 Download gff for BS07537.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10101255..10101614 11..369 98   Minus

BS07537.complete Sequence

377 bp (377 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635897

> BS07537.complete
GAAGTTATCAGTCGACATGGTGAAGACGTTTCAGGCCTATCTACCGTCCA
CGAATCGGACATACTCATGTGTTCACTGCCGCGCCCACCTCGCCTCCCAC
GACGAGCTCATATCGAAGTCGTTTCAGGGCAGTCAGGGACCGGCCTATCT
GTTCAACTCGGTGGTGAACGTGGCCTGTGGCCAGACGGAGGAGCGTGTGC
TCCTGACCGGCCTCCATGCGGTGGCGGACATCTACTGCGAGTGCTGCAAG
ACGCCGCTGGGCTGGAAATATGAGCACGCCTATGAGTCCAGCCAAAAGTA
CAAGGAGGGCAAGTTCATCATTGAGCTGGCGCACATGATCAAGGAGAACG
GCTGGGACTGAAAGCTTTCTAGACCAT

BS07537.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-RE 345 CG15309-PE 1..345 17..361 1725 100 Plus
CG15309-RD 345 CG15309-PD 1..345 17..361 1725 100 Plus
CG15309-RC 345 CG15309-PC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-RE 3058 CG15309-RE 775..1120 17..362 1730 100 Plus
CG15309-RD 2877 CG15309-RD 594..939 17..362 1730 100 Plus
CG15309-RC 2606 CG15309-RC 323..668 17..362 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10207230..10207575 362..17 1730 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:12:03 has no hits.

BS07537.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:28 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:27 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 908..1267 11..369 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:13 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 323..666 17..360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:28 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RB 908..1267 11..369 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:01 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
CG15309-RC 323..666 17..360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:01 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
X 10207232..10207575 17..360 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:13 Download gff for BS07537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10101265..10101608 17..360 100   Minus

BS07537.pep Sequence

Translation from 16 to 360

> BS07537.pep
MVKTFQAYLPSTNRTYSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVV
NVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKF
IIELAHMIKENGWD*

BS07537.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15309-PE 114 CG15309-PE 1..114 1..114 623 100 Plus
CG15309-PD 114 CG15309-PD 1..114 1..114 623 100 Plus
CG15309-PC 114 CG15309-PC 1..114 1..114 623 100 Plus
CG15309-PB 114 CG15309-PB 1..114 1..114 623 100 Plus
CG15309-PA 114 CG15309-PA 1..114 1..114 623 100 Plus