Clone BS07539 Report

Search the DGRC for BS07539

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptPp1-13C-RA
Protein status:BS07539.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07539.3prime Sequence

913 bp (811 high quality bases) assembled on 2006-01-06

> BS07539.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGCGCTTCTCGACAGGCTTCAGGATT
TGGAAGGAGCACATGAGTGTATTGTCCACGGACATCATGGCACCAGCATT
GTCGAATTCACCGCAATAGTTGGGGGCGGAAAACAAAGTGACCAATTGGC
GCTTGGCAAAGAACTCGTAACCATCCTCGACGACTTGATGGGCACGACAG
ATCAGATCCAGATCGTGCTTTTGGAGGAACTTGACCACAACTTCGGCGCC
AAAGGTGAAACTAACGCCACGGTCGTTCTCGCCCCACCCAATGGTGTCCT
TGTCCGGATCGGACCACAGCAGGTCACAGAGTAGTCCCTGATCGGGAACA
TCGGTGGGACGCATAATACGACGGATCTGCTCCATCGAGGTAAGATCCGG
ACTCAGTCCGCCGTGGCAGCAAAAGATCTTCTCATCCACAATGGCCACAA
CTGGCAGACAGTTGAAGCAGTCCGTGAATGTCTTCCACAACTTGATGGTA
TATCTGCGCTTGCACTCGTCGTAGAATCCATAGATTCTATTAATGCTGGC
GCACTCGTGATTGCCGCGCAACAAAAAGAAGTTCTCCGAATACTTGATCT
TGTACGCCAACAGCAGGCAGATGGTCTCCAGCGACTGCTTGCCCCTGTCC
ACGTAATCGCCCAAGAAAAGATAGTTAGCCTCCGGCGGATAGCCGCCGTA
CTCGAACAGACGCAACAGATCATAGTACTGGCCATGGATATCGCCGCAGA
TCTTGAGCGGCGCCTCCAGCTCTAAGAGTATGGGCTGTGCCAGCAGTATT
TCGCGCGACTTGAGGCACAGGCCCCGTATCTCACCCTCCGACAGCTGGAC
ATTCTTGCCAGGCCGTGCGCCACGCACCCTCCACAGACGGGAAATTATGC
TCTCCAAATTGAG

BS07539.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9156-PA 909 Pp1-13C-RA 48..909 878..17 4310 100 Minus
CG2096-PB 993 flw-RB 284..423 645..506 350 90 Minus
CG2096-PA 1386 flw-RA 677..816 645..506 350 90 Minus
CG5650-PA 909 Pp1-87B-RA 429..515 497..411 285 93.1 Minus
CG5650-PA 909 Pp1-87B-RA 172..245 754..681 270 94.5 Minus
CG6593-PA 984 Pp1alpha-96A-RA 283..383 643..543 205 88.1 Minus
CG5650-PA 909 Pp1-87B-RA 283..387 643..539 200 87.6 Minus
CG5650-PA 909 Pp1-87B-RA 802..887 124..39 180 88.3 Minus
CG5650-PA 909 Pp1-87B-RA 733..773 193..153 180 97.5 Minus
CG8822-PA 1011 PpD6-RA 799..860 199..138 160 90.3 Minus
CG9156-PA 909 Pp1-13C-RA 13..43 913..883 155 100 Minus
CG6593-PA 984 Pp1alpha-96A-RA 802..852 124..74 155 92.1 Minus
CG6593-PA 984 Pp1alpha-96A-RA 541..650 385..276 150 85.4 Minus
CG5650-PA 909 Pp1-87B-RA 535..593 391..333 145 89.8 Minus
CG5650-PA 909 Pp1-87B-RA 607..674 319..252 140 88.2 Minus
CG6593-PA 984 Pp1alpha-96A-RA 481..533 445..393 140 90.5 Minus
CG6593-PA 984 Pp1alpha-96A-RA 139..185 787..741 135 91.4 Minus
CG6593-PA 984 Pp1alpha-96A-RA 427..473 499..453 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 668..1565 913..16 4445 99.8 Minus
Pp1-87B-RA 2203 CG5650-RA 277..1137 878..18 2220 83.9 Minus
Pp1alpha-96A-RB 3210 CG6593-RB 437..1288 878..27 1890 81.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359428..15360325 16..913 4445 99.7 Plus
3R 32079331 3R 12424781..12425641 18..878 2220 83.9 Plus
3R 32079331 3R 24518843..24519189 877..531 820 82.4 Minus
X 23542271 X 10406379..10406692 850..537 715 81.8 Minus
3R 32079331 3R 24519597..24519874 526..249 685 83.1 Minus
X 23542271 X 10406764..10407038 526..252 430 77.1 Minus
2R 25286936 2R 17955968..17956334 399..765 395 73.8 Plus
3R 32079331 3R 24519961..24520089 220..92 240 79.1 Minus
X 23542271 X 10407172..10407299 178..51 235 78.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:19:16 has no hits.

BS07539.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:49 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 13..909 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:52 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 13..909 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:43 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 668..1565 16..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:21 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 668..1565 16..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:21 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15359428..15360325 16..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:43 Download gff for BS07539.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253461..15254358 16..913 99   Plus

BS07539.5prime Sequence

921 bp (837 high quality bases) assembled on 2006-01-06

> BS07539.5prime
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACATACACTCATGTGCTCCTTCCAATCCTGAAGC
CTGTCGAGAAGCGCAAGAAGT

BS07539.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9156-PA 909 Pp1-13C-RA 1..853 17..869 4265 100 Plus
CG2096-PB 993 flw-RB 284..423 297..436 350 90 Plus
CG2096-PA 1386 flw-RA 677..816 297..436 350 90 Plus
CG5650-PA 909 Pp1-87B-RA 429..515 445..531 285 93.1 Plus
CG5650-PA 909 Pp1-87B-RA 172..245 188..261 270 94.5 Plus
CG6593-PA 984 Pp1alpha-96A-RA 283..383 299..399 205 88.1 Plus
CG5650-PA 909 Pp1-87B-RA 283..387 299..403 200 87.6 Plus
CG5650-PA 909 Pp1-87B-RA 733..773 749..789 180 97.5 Plus
CG9156-PA 909 Pp1-13C-RA 876..907 890..921 160 100 Plus
CG8822-PA 1011 PpD6-RA 799..860 743..804 160 90.3 Plus
CG6593-PA 984 Pp1alpha-96A-RA 802..852 818..868 155 92.1 Plus
CG6593-PA 984 Pp1alpha-96A-RA 541..650 557..666 150 85.4 Plus
CG5650-PA 909 Pp1-87B-RA 535..593 551..609 145 89.8 Plus
CG5650-PA 909 Pp1-87B-RA 607..674 623..690 140 88.2 Plus
CG6593-PA 984 Pp1alpha-96A-RA 481..533 497..549 140 90.5 Plus
CG6593-PA 984 Pp1alpha-96A-RA 139..185 155..201 135 91.4 Plus
CG6593-PA 984 Pp1alpha-96A-RA 427..473 443..489 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 655..1562 16..921 4490 99.8 Plus
Pp1-87B-RA 2203 CG5650-RA 254..1136 41..921 2205 83.5 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 429..1288 56..913 1895 81.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359431..15360338 921..16 4440 99.8 Minus
3R 32079331 3R 12424782..12425664 921..41 2155 83.5 Minus
3R 32079331 3R 24518843..24519189 65..411 820 82.4 Plus
X 23542271 X 10406379..10406692 92..405 715 81.8 Plus
3R 32079331 3R 24519597..24519874 416..693 685 83.1 Plus
X 23542271 X 10406764..10407038 416..690 430 77.1 Plus
2R 25286936 2R 17955968..17956334 543..177 395 73.8 Minus
3R 32079331 3R 24519961..24520089 722..850 240 79.1 Plus
X 23542271 X 10407172..10407299 764..890 200 78.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:03:48 has no hits.

BS07539.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:49 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..907 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:53 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..907 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:53 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1562 10..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:37 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1562 10..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:37 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15359431..15360342 10..921 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:53 Download gff for BS07539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253464..15254375 10..921 99   Minus

BS07539.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635898

> BS07539.complete
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAA
GCCTGTCGAGAAGCGCAAGAAGTAGAAGCTTTCTAGACCAT

BS07539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 909 CG9156-PA 1..909 17..925 4545 100 Plus
Pp1-87B-RA 909 CG5650-PA 25..908 41..924 2245 83.6 Plus
Pp1alpha-96A-RB 984 CG6593-PB 40..899 56..915 1915 81.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 655..1565 16..926 4555 100 Plus
Pp1-87B-RA 2203 CG5650-RA 254..1137 41..924 2245 83.6 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 429..1288 56..915 1915 81.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359428..15360338 926..16 4555 100 Minus
3R 32079331 3R 12424781..12425664 924..41 2245 83.6 Minus
3R 32079331 3R 24518843..24519189 65..411 820 82.4 Plus
X 23542271 X 10406379..10406692 92..405 715 81.8 Plus
3R 32079331 3R 24519597..24519874 416..693 685 83.1 Plus
X 23542271 X 10406764..10407038 416..690 430 77.1 Plus
2R 25286936 2R 17955968..17956334 543..177 395 73.8 Minus
Y 3667352 Y 3539716..3539871 889..734 315 80.1 Minus
2L 23513712 2L 3110485..3110603 710..828 295 83.2 Plus
2R 25286936 2R 21881560..21881659 860..761 260 84 Minus
2R 25286936 2R 22041989..22042409 830..410 245 70.5 Minus
3R 32079331 3R 24519961..24520089 722..850 240 79.1 Plus
X 23542271 X 10407172..10407299 764..891 235 78.9 Plus
Y 3667352 Y 10571..10705 734..868 225 77.8 Plus
2R 25286936 2R 21881877..21882037 543..383 220 75.8 Minus
2R 25286936 2R 17955679..17955766 832..745 215 83 Minus
Blast to na_te.dros performed on 2014-11-27 06:47:40 has no hits.

BS07539.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:03 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:22 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1565 10..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:24 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 656..1564 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:03 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1565 10..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:31 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 656..1564 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:31 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
X 15359429..15360337 17..925 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:24 Download gff for BS07539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253462..15254370 17..925 100   Minus

BS07539.pep Sequence

Translation from 16 to 924

> BS07539.pep
MAEVLNLESIISRLLEVRGARPGKNVQLSEGEIRGLCLKSREILLAQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGYPPEANYLFLGDYVDRGKQSLE
TICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF
TDCFNCLPVVAIVDEKIFCCHGGLSPDLTSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTIGWGENDRGVSFTFGAEVVVKFLQKHDLDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVEKR
KK*

BS07539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-PA 302 CG9156-PA 1..302 1..302 1611 100 Plus
Pp1-87B-PA 302 CG5650-PA 1..302 1..302 1543 93.7 Plus
Pp1alpha-96A-PB 327 CG6593-PB 1..301 1..301 1522 92.4 Plus
Pp1alpha-96A-PA 327 CG6593-PA 1..301 1..301 1522 92.4 Plus
flw-PC 330 CG2096-PC 6..303 5..302 1405 85.6 Plus