Clone BS07540 Report

Search the DGRC for BS07540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG8417-RA
Protein status:BS07540.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07540.3prime Sequence

842 bp (841 high quality bases) assembled on 2006-01-06

> BS07540.3prime
ATGGTCTAGAAAGCTTTTAGGGCACTCGAAAGTAGTTGCTGGTTGCTATG
TAGCCGCTGAAGTCCTCGTCGCAATCGTCGGACTGGGCGAATTCGATTTC
CGGCGCCGCCTCGACGGGAATGTACACAATGCTGCCGCGGGTTACCAAGA
TCTCCTTATCTCCCTGCTGGGTTTTCAATTTAAGAATGCGGGATCCCTTT
AGAACTATCAATATGGAGCCGAATGCTTGTATCTCCAGCTTGTACGACTC
CAGCGAGTGTTCGATATTCACATTTATCACTGCAAAGTCGGATACTGGCG
GAATATAGACCTGGACCTGGTCATCTATGCGGTACGGAATGAACTCCTTG
CGATCCTTATACGAACTTTCGAAGATCACAGATTCCAGCAGCTGGTCCAC
ATCCTTGTACTTGGGCGTTAGGCCCGCCCGTATCACATTGTCCGAGCAAG
CCATGCACTCCACACAGTCGCCGTCCAGGTAGGCATGAATCTCGTTCGCG
CCCAAGTAGATCGCCTGGCCGGGCTGCAGGCGGATTAGGTTGAGGAAGAA
CAGGGACAGTACGCCCACATCGCCGGGGAAGTCTTTGTTGACCTTGGTGA
ACACCTCAAGCAGATCGTTGGATTTCAGTTCGTTTTGGTAATCCTTGGCT
ATTTCACTGATGCACTTGGCTATCACCGGCTCTTCGGTCTTCATCAGCTT
CTCGTAGCACAACTTAACGCTTTCCGAGTTGGTCGAGTCATGGAGCTGAT
CCACAGCCTCCTTGCCAATGAGTTTACTCAGCGGCTGGAACTCATCGATG
TAGTCCCTGATATCTTCGGCTGACATAAATCCCACGAGGGCC

BS07540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-PA 1191 CG8417-RA 366..1191 842..17 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-RA 1410 CG8417-RA 522..1349 842..15 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9760531..9761147 631..15 3085 100 Minus
3R 32079331 3R 9760267..9760478 842..631 1060 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:26:10 has no hits.

BS07540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:51 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-PA 366..1191 17..842 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:55 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-PA 366..1191 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:06 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 522..1353 8..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:27 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 522..1353 8..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:27 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9760267..9760478 631..842 100 -> Minus
3R 9760532..9761151 8..630 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:06 Download gff for BS07540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5585989..5586200 631..842 100 -> Minus
arm_3R 5586254..5586873 8..630 99   Minus

BS07540.5prime Sequence

903 bp (805 high quality bases) assembled on 2006-01-06

> BS07540.5prime
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAAAGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGA

BS07540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-PA 1191 CG8417-RA 1..887 17..903 4410 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-RA 1410 CG8417-RA 157..1043 17..903 4420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9759902..9760478 17..593 2885 100 Plus
3R 32079331 3R 9760531..9760841 593..903 1540 99.7 Plus
Blast to na_te.dros performed on 2015-02-13 00:22:28 has no hits.

BS07540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:52 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:57 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:37 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 152..1042 11..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:14 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 152..1042 11..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:14 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9759897..9760478 11..593 99 -> Plus
3R 9760532..9760840 594..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:37 Download gff for BS07540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5585619..5586200 11..593 99 -> Plus
arm_3R 5586254..5586562 594..902 99   Plus

BS07540.complete Sequence

1223 bp (1223 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635899

> BS07540.complete
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAAGGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGACCAGGTCCAGGTCTATATTCCGCCAGTATCCGACTTTGCAGTGATAA
ATGTGAATATCGAACACTCGCTGGAGTCGTACAAGCTGGAGATACAAGCA
TTCGGCTCCATATTGATAGTTCTAAAGGGATCCCGCATTCTTAAATTGAA
AACCCAGCAGGGAGATAAGGAGATCTTGGTAACCCGCGGCAGCATTGTGT
ACATTCCCGTCGAGGCGGCGCCGGAAATCGAATTCGCCCAGTCCGACGAT
TGCGACGAGGACTTCAGCGGCTACATAGCAACCAGCAACTACTTTCGAGT
GCCCTAAAAGCTTTCTAGACCAT

BS07540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-RA 1191 CG8417-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-RA 1410 CG8417-RA 157..1349 17..1209 5965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9760531..9761147 593..1209 3085 100 Plus
3R 32079331 3R 9759902..9760478 17..593 2885 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:15 has no hits.

BS07540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:29 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:29 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 177..1378 11..1216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:21 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 157..1345 17..1205 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:29 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 177..1378 11..1216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:14 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
CG8417-RA 157..1345 17..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:14 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9759902..9760478 17..593 100 -> Plus
3R 9760532..9761143 594..1205 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:21 Download gff for BS07540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5585624..5586200 17..593 100 -> Plus
arm_3R 5586254..5586865 594..1205 100   Plus

BS07540.pep Sequence

Translation from 16 to 1206

> BS07540.pep
MELTGWVKNYGWGRKGINSAVAQLAMANDPDFRLNEEETYAEMWMGTHVC
GVSVVKETGETLDRVLKKDLSYLFKVLSINKALSIQVHPNKCEAERLHKE
RPDIYKDPNHKPELAIALTPFLALVGFMSAEDIRDYIDEFQPLSKLIGKE
AVDQLHDSTNSESVKLCYEKLMKTEEPVIAKCISEIAKDYQNELKSNDLL
EVFTKVNKDFPGDVGVLSLFFLNLIRLQPGQAIYLGANEIHAYLDGDCVE
CMACSDNVIRAGLTPKYKDVDQLLESVIFESSYKDRKEFIPYRIDDQVQV
YIPPVSDFAVINVNIEHSLESYKLEIQAFGSILIVLKGSRILKLKTQQGD
KEILVTRGSIVYIPVEAAPEIEFAQSDDCDEDFSGYIATSNYFRVP*

BS07540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8417-PA 396 CG8417-PA 1..396 1..396 2050 100 Plus