Clone Sequence Records
BS07540.3prime Sequence
842 bp (841 high quality bases) assembled on 2006-01-06
> BS07540.3prime
ATGGTCTAGAAAGCTTTTAGGGCACTCGAAAGTAGTTGCTGGTTGCTATG
TAGCCGCTGAAGTCCTCGTCGCAATCGTCGGACTGGGCGAATTCGATTTC
CGGCGCCGCCTCGACGGGAATGTACACAATGCTGCCGCGGGTTACCAAGA
TCTCCTTATCTCCCTGCTGGGTTTTCAATTTAAGAATGCGGGATCCCTTT
AGAACTATCAATATGGAGCCGAATGCTTGTATCTCCAGCTTGTACGACTC
CAGCGAGTGTTCGATATTCACATTTATCACTGCAAAGTCGGATACTGGCG
GAATATAGACCTGGACCTGGTCATCTATGCGGTACGGAATGAACTCCTTG
CGATCCTTATACGAACTTTCGAAGATCACAGATTCCAGCAGCTGGTCCAC
ATCCTTGTACTTGGGCGTTAGGCCCGCCCGTATCACATTGTCCGAGCAAG
CCATGCACTCCACACAGTCGCCGTCCAGGTAGGCATGAATCTCGTTCGCG
CCCAAGTAGATCGCCTGGCCGGGCTGCAGGCGGATTAGGTTGAGGAAGAA
CAGGGACAGTACGCCCACATCGCCGGGGAAGTCTTTGTTGACCTTGGTGA
ACACCTCAAGCAGATCGTTGGATTTCAGTTCGTTTTGGTAATCCTTGGCT
ATTTCACTGATGCACTTGGCTATCACCGGCTCTTCGGTCTTCATCAGCTT
CTCGTAGCACAACTTAACGCTTTCCGAGTTGGTCGAGTCATGGAGCTGAT
CCACAGCCTCCTTGCCAATGAGTTTACTCAGCGGCTGGAACTCATCGATG
TAGTCCCTGATATCTTCGGCTGACATAAATCCCACGAGGGCC
BS07540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-PA | 1191 | CG8417-RA | 366..1191 | 842..17 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-RA | 1410 | CG8417-RA | 522..1349 | 842..15 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9760531..9761147 | 631..15 | 3085 | 100 | Minus |
3R | 32079331 | 3R | 9760267..9760478 | 842..631 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:26:10 has no hits.
BS07540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:51 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-PA | 366..1191 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:55 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-PA | 366..1191 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:06 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 522..1353 | 8..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:27 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 522..1353 | 8..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:27 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9760267..9760478 | 631..842 | 100 | -> | Minus |
3R | 9760532..9761151 | 8..630 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:06 Download gff for
BS07540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5585989..5586200 | 631..842 | 100 | -> | Minus |
arm_3R | 5586254..5586873 | 8..630 | 99 | | Minus |
BS07540.5prime Sequence
903 bp (805 high quality bases) assembled on 2006-01-06
> BS07540.5prime
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAAAGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGA
BS07540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-PA | 1191 | CG8417-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-RA | 1410 | CG8417-RA | 157..1043 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9759902..9760478 | 17..593 | 2885 | 100 | Plus |
3R | 32079331 | 3R | 9760531..9760841 | 593..903 | 1540 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:22:28 has no hits.
BS07540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:52 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:57 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:37 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 152..1042 | 11..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:14 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 152..1042 | 11..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:14 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9759897..9760478 | 11..593 | 99 | -> | Plus |
3R | 9760532..9760840 | 594..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:37 Download gff for
BS07540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5585619..5586200 | 11..593 | 99 | -> | Plus |
arm_3R | 5586254..5586562 | 594..902 | 99 | | Plus |
BS07540.complete Sequence
1223 bp (1223 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635899
> BS07540.complete
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAAGGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGACCAGGTCCAGGTCTATATTCCGCCAGTATCCGACTTTGCAGTGATAA
ATGTGAATATCGAACACTCGCTGGAGTCGTACAAGCTGGAGATACAAGCA
TTCGGCTCCATATTGATAGTTCTAAAGGGATCCCGCATTCTTAAATTGAA
AACCCAGCAGGGAGATAAGGAGATCTTGGTAACCCGCGGCAGCATTGTGT
ACATTCCCGTCGAGGCGGCGCCGGAAATCGAATTCGCCCAGTCCGACGAT
TGCGACGAGGACTTCAGCGGCTACATAGCAACCAGCAACTACTTTCGAGT
GCCCTAAAAGCTTTCTAGACCAT
BS07540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-RA | 1191 | CG8417-PA | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-RA | 1410 | CG8417-RA | 157..1349 | 17..1209 | 5965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9760531..9761147 | 593..1209 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 9759902..9760478 | 17..593 | 2885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:15 has no hits.
BS07540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:29 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 1..1191 | 17..1207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:29 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 177..1378 | 11..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:21 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 157..1345 | 17..1205 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:29 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 177..1378 | 11..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:14 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8417-RA | 157..1345 | 17..1205 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:14 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9759902..9760478 | 17..593 | 100 | -> | Plus |
3R | 9760532..9761143 | 594..1205 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:21 Download gff for
BS07540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5585624..5586200 | 17..593 | 100 | -> | Plus |
arm_3R | 5586254..5586865 | 594..1205 | 100 | | Plus |
BS07540.pep Sequence
Translation from 16 to 1206
> BS07540.pep
MELTGWVKNYGWGRKGINSAVAQLAMANDPDFRLNEEETYAEMWMGTHVC
GVSVVKETGETLDRVLKKDLSYLFKVLSINKALSIQVHPNKCEAERLHKE
RPDIYKDPNHKPELAIALTPFLALVGFMSAEDIRDYIDEFQPLSKLIGKE
AVDQLHDSTNSESVKLCYEKLMKTEEPVIAKCISEIAKDYQNELKSNDLL
EVFTKVNKDFPGDVGVLSLFFLNLIRLQPGQAIYLGANEIHAYLDGDCVE
CMACSDNVIRAGLTPKYKDVDQLLESVIFESSYKDRKEFIPYRIDDQVQV
YIPPVSDFAVINVNIEHSLESYKLEIQAFGSILIVLKGSRILKLKTQQGD
KEILVTRGSIVYIPVEAAPEIEFAQSDDCDEDFSGYIATSNYFRVP*
BS07540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8417-PA | 396 | CG8417-PA | 1..396 | 1..396 | 2050 | 100 | Plus |