Clone Sequence Records
BS07541.3prime Sequence
836 bp (835 high quality bases) assembled on 2006-01-06
> BS07541.3prime
ATGGTCTAGAAAGCTTCTACTCTTTAGTCGCTCCTTGGGTAGCTGGTTCT
TGGGGTTTGTCAATAGAATCAATGCCAGATGGGAGAGAGCATTCTTCGCT
GATTTTACCATCGCATTCATCCGTCCTTGTCATAATGGGCTTTACTTCGC
AGGATTCTCCTCCCTTCTTCCTTGAGCAGCAGCATTTACCGCAGCAACCA
CAAACTTCATCTCCTCCGGCGCCATCCGGAACGAACTCGCTGCAACCCTG
TGCAGGTGGATCTTTGGGATCCCTGCAGCACTTCTCCAGCGCTTCGCAGA
GATCATTCTTTCCATTTGGGTCTTGAACGAAACAAGTTACCAGCGATTTG
TACAGTTCATCGTAGTTGCGGGGCTCCGGTTGTTTAAAGGCCTTTTGGTT
CGCCATCTCGCGTTGGAATGCCTCGTTGTCGGGCCGGGGATCCATCTTGT
ACTTTGCCCACTCGTAATCGGTGCACTTGCTCTCTGCCTCGCCGCATTTC
GGGGGGCAGTACCAATGCTTACGTCTGAGGCCATGTTTGGGAGGCTTTTC
CGGCTTCGCCATGTCCATCGCCTGTTCTATGCTGATCGCTGGATAGACGG
CGCTATCGTCAAAAGGATTGCTCGGATCCGCTGGCTGAGGACAGTGAAGC
CAGGAGAAGACATTGTTCGACTTCAGTTGGCGTTTTATGTTTGGCATCCT
TTCGAGCTTGGCCTTCAGACATTTTCGATTTAAAACAAAAGCGCCAGGCT
GGGGGGGCTTCTTCTGAAGTTGCCATTTAGGCTTTATGTTGGACTTCTTC
GGCGGTTTTGGAGCAAGACTAGCCGCCTTTAGGCTC
BS07541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31920-PB | 1224 | CG31920-RB | 405..1224 | 836..17 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43755-RD | 1709 | CG43755-RD | 541..1362 | 836..15 | 4110 | 100 | Minus |
| CG43755-RB | 2333 | CG43755-RB | 541..1169 | 836..208 | 3145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 328593..329221 | 208..836 | 3145 | 100 | Plus |
| 2L | 23513712 | 2L | 325869..326062 | 15..208 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:04 has no hits.
BS07541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:53 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-PB | 405..1224 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:06:58 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-PB | 405..1224 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:05 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 541..1362 | 15..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:36 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 541..1362 | 15..836 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:36 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 325869..326061 | 15..207 | 100 | <- | Plus |
| 2L | 328593..329221 | 208..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:05 Download gff for
BS07541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 325869..326061 | 15..207 | 100 | <- | Plus |
| arm_2L | 328593..329221 | 208..836 | 100 | | Plus |
BS07541.5prime Sequence
862 bp (704 high quality bases) assembled on 2006-01-06
> BS07541.5prime
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGATCCCCGGCCCGACAACGAGGCATTCCAACGCGAG
ATGGCGAACCAA
BS07541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31920-PB | 1224 | CG31920-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43755-RB | 2333 | CG43755-RB | 137..982 | 17..862 | 4230 | 100 | Plus |
| CG43755-RD | 1709 | CG43755-RD | 137..982 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 328780..329625 | 862..17 | 4230 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 20:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 3547..3622 | 228..303 | 119 | 61.8 | Plus |
BS07541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:54 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-PB | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:00 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-PB | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:07 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 137..980 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:41 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 137..980 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:41 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 328782..329625 | 17..860 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:07 Download gff for
BS07541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 328782..329625 | 17..860 | 100 | | Minus |
BS07541.complete Sequence
1256 bp (1256 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635900
> BS07541.complete
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGATCCCCGGCCCGACAACGAGGCATTCCAACGCGAG
ATGGCGAACCAAAAGGCCTTTAAACAACCGGAGCCCCGCAACTACGATGA
ACTGTACAAATCGCTGGTAACTTGTTTCGTTCAAGACCCAAATGGAAAGA
ATGATCTCTGCGAAGCGCTGGAGAAGTGCTGCAGGGATCCCAAAGATCCA
CCTGCACAGGGTTGCAGCGAGTTCGTTCCGGATGGCGCCGGAGGAGATGA
AGTTTGTGGTTGCTGCGGTAAATGCTGCTGCTCAAGGAAGAAGGGAGGAG
AATCCTGCGAAGTAAAGCCCATTATGACAAGGACGGATGAATGCGATGGT
AAAATCAGCGAAGAATGCTCTCTCCCATCTGGCATTGATTCTATTGACAA
ACCCCAAGAACCAGCTACCCAAGGAGCGACTAAAGAGTAGAAGCTTTCTA
GACCAT
BS07541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43755-RD | 1224 | CG43755-PD | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| CG43755-RB | 2049 | CG43755-PB | 1..1030 | 20..1049 | 5150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43755-RD | 1709 | CG43755-RD | 137..1362 | 17..1242 | 6130 | 100 | Plus |
| CG43755-RB | 2333 | CG43755-RB | 137..1169 | 17..1049 | 5165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 328593..329625 | 1049..17 | 5165 | 100 | Minus |
| 2L | 23513712 | 2L | 325869..326062 | 1242..1049 | 970 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 3547..3622 | 228..303 | 119 | 61.8 | Plus |
BS07541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:13 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-RB | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:11 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-RB | 137..1362 | 17..1242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:32 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 137..1360 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:13 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31920-RB | 137..1362 | 17..1242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:14 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43755-RD | 137..1360 | 17..1240 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:14 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 325871..326061 | 1050..1240 | 100 | <- | Minus |
| 2L | 328593..329625 | 17..1049 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:32 Download gff for
BS07541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 325871..326061 | 1050..1240 | 100 | <- | Minus |
| arm_2L | 328593..329625 | 17..1049 | 100 | | Minus |
BS07541.pep Sequence
Translation from 16 to 1239
> BS07541.pep
MMGTRAAEPRGSRRSLAGQSIQELSVCQEPDPLNTFLEKPLTLYQWMRWR
NCKTHKPHLEETYPSILPPISKCDDAKTLKYVENAMEANKCKEYVKEDVL
TVWNYSPQKESLVWYGVKSQYPSPQAVLYDRALKKSLKAASLAPKPPKKS
NIKPKWQLQKKPPQPGAFVLNRKCLKAKLERMPNIKRQLKSNNVFSWLHC
PQPADPSNPFDDSAVYPAISIEQAMDMAKPEKPPKHGLRRKHWYCPPKCG
EAESKCTDYEWAKYKMDPRPDNEAFQREMANQKAFKQPEPRNYDELYKSL
VTCFVQDPNGKNDLCEALEKCCRDPKDPPAQGCSEFVPDGAGGDEVCGCC
GKCCCSRKKGGESCEVKPIMTRTDECDGKISEECSLPSGIDSIDKPQEPA
TQGATKE*
BS07541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43755-PD | 407 | CG43755-PD | 1..407 | 1..407 | 2259 | 100 | Plus |
| CG43755-PB | 682 | CG43755-PB | 1..343 | 2..344 | 1899 | 100 | Plus |
| CG31921-PA | 713 | CG31921-PA | 34..340 | 42..343 | 599 | 40.5 | Plus |
| CG31797-PA | 868 | CG31797-PA | 35..330 | 61..340 | 407 | 34.3 | Plus |
