Clone Sequence Records
BS07542.3prime Sequence
885 bp (855 high quality bases) assembled on 2006-01-06
> BS07542.3prime
ATGGTCTAGAAAGCTTTCAGTGCGTGAACTGACGCAGGGTGTTGTTGTTC
TGCTGCTGCTTCTGAGAGGCGGACTTCTGCTGGAAGGATCTGCGTCCTGT
GGTGGCACACAGTCCATTCCGCAGGGGCAAAGCTGGTGGCATCGGTGGCG
GCGTGGGCGTCTTGCTGCGACCCAGTTGCTCCAACGGCATCGAGTAGTGG
GTATTGCTGTAGATGTAGTTGTGGTCCAGGATCTCGCTGCCCATCTCCTG
ATCGTATAGCTCACGCTGCTTGAAGTGCTCTTGGGTCAGTCGCAGTTGCG
GCTGATTCGGTCCACCCAACGGGGCGCCATGCACCATGGGCACATCCGCG
TATGAGTAGCAGGAATCACCAACTGTAGCCGTGGCCGAGAGGAACTGCGG
CTTGGTATAGTGGTTCAGCTGGGGATTCTGCTGATGCACATCCCGACCCA
TGGTGGCCGACTTCATGTGCAGCACAAATGAGGCACTGTCGTCGATGGCT
CCCTGTGAAACCAGGGCCTTGTTGTTATTCAGCTTCTTCTCACTGATCAT
TGTGGCGGTGGGCACTACCAACTGTTGGAACTTCTGCTGGGGATCGATGG
CGCCCAGGTCATTGACAGGCATCGGGCACATTCCATAGTGATGGGTAGCT
CCGGGATGATGAGGTGCGGTATAGGTGTTGGGGAACGTGGAGTGGATGCC
CAGGGAGCAGGGATGATGCTGATGGCGCGACATGTAGTCCTCGTCGCAGA
AGGTCTTCTGGTATTCCCGTTCCTTACGGCCCAGAGCCGAGTTACCCCAC
AGACCGCCCTTGATGGTTTCGCGGATCTTATGACGGCAGCGGTACAGAAC
CAAAGCCAAGGCGGTAATCGTGGCAGCAGATCCCA
BS07542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11280-PA | 2214 | trn-RA | 1346..2214 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 1931..2799 | 885..17 | 4345 | 100 | Minus |
| trn-RA | 3365 | CG11280-RA | 1931..2799 | 885..17 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13116643..13117511 | 885..17 | 4345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:34 has no hits.
BS07542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:55 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-PA | 1347..2214 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:02 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11280-PA | 1347..2214 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:18 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1932..2803 | 12..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:01 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1932..2803 | 12..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:01 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13116644..13117515 | 12..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:18 Download gff for
BS07542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13109744..13110615 | 12..884 | 99 | | Minus |
BS07542.5prime Sequence
925 bp (828 high quality bases) assembled on 2006-01-06
> BS07542.5prime
GAAGTTATCAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCA
TCTGGTGCATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCC
AATTGCCCGCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATG
TGGCGAGGGCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCC
AGCGACTGGTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATC
CAGTTCTACGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGAT
GACCATTCCGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGC
ATCTGAATCACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGT
CTGTCGGCAGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACT
TCACCAGGGCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGG
GCGAGAATCGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCC
CAGTTGCGCATCCTTTATCTGGATGATAATGCCTTGACCACCGTTCCCGA
TCCCGTGATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAA
TGAACACCCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGA
CTTACTCGCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGA
CAGCTTCCTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATC
GTCTGGATCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAG
CAGCTGTCCCTGGGTCAAAACGATTTCGAGGTGATCAGCGAANGCGCATT
CATGGGCCTGAAGCAACTAAACGCC
BS07542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11280-PA | 2214 | trn-RA | 1..902 | 17..918 | 4491 | 99.8 | Plus |
| CG11282-PA | 1623 | caps-RA | 175..248 | 152..225 | 145 | 87.8 | Plus |
| CG11282-PB | 1623 | caps-RB | 175..248 | 152..225 | 145 | 87.8 | Plus |
| CG11282-PC | 2247 | caps-RC | 175..248 | 152..225 | 145 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..1495 | 17..925 | 4514 | 99.8 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..1495 | 17..925 | 4514 | 99.8 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 91..514 | 545 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13116199 | 17..918 | 4499 | 99.9 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 91..514 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:22:10 has no hits.
BS07542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:56 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-PA | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:04 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11280-PA | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:32 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1495 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:10 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1495 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:10 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13116207 | 17..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:32 Download gff for
BS07542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13109307 | 17..925 | 99 | | Plus |
BS07542.complete Sequence
2246 bp assembled on 2008-01-03
GenBank Submission: FJ635901
> BS07542.complete
GAAGTTATCAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCA
TCTGGTGCATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCC
AATTGCCCGCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATG
TGGCGAGGGCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCC
AGCGACTGGTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATC
CAGTTCTACGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGAT
GACCATTCCGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGC
ATCTGAATCACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGT
CTGTCGGCAGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACT
TCACCAGGGCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGG
GCGAGAATCGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCC
CAGTTGCGCATCCTTTATCTGGATGATAATGCCTTGACCACCGTTCCCGA
TCCCGTGATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAA
TGAACACCCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGA
CTTACTCGCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGA
CAGCTTCCTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATC
GTCTGGATCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAG
CAGCTGTCCCTGGGTCAAAACGATTTCGAGGTGATCAGCGAAGGCGCATT
CATGGGCCTGAAGCAACTTAAACGCCTGGAGGTGAATGGAGCTCTTAGGC
TGAAGCGTGTGATGACCGGAGCCTTCAGCGACAATGGTAACCTGGAGTAT
CTGAATCTATCGTCCAACAAAATGCTTTTGGAGGTTCAAGAAGGTGCCCT
CAGTGGGCTGTCCCAATTGAAGCATGTTGTTCTCAAGGCCAATGCGCTGA
CTTCCTTGGCAGAAGGTCTGTTCCCGTGGAAGGATCTTCAGACTCTGGAC
CTTTCCGAAAATCCCTTGTCCTGCGACTGCCGTGTGATGTGGCTGCACAA
TCTGCTGGTGGCCAAGAATGCCAGTCAGGATGATGTCTCCGAACTGCTGT
GTGAGTTCCCCGAACGTCTGCGCGGTGAATCCTTGCGCCATTTGAATCCT
GCTATGATGGGATGCACACATGCCGATCCTCGCAAGCAGGCCTTGATTGG
AGCTCTCCTGGTGGGATCTGCTGCCACGATTACCGCCTTGGCTTTGGTTC
TGTACCGCTGCCGTCATAAGATCCGCGAAACCATCAAGGGCGGTCTGTGG
GGTAACTCGGCTCTGGGCCGTAAGGAACGGGAATACCAGAAGACCTTCTG
CGACGAGGACTACATGTCGCGCCATCAGCATCATCCCTGCTCCCTGGGCA
TCCACTCCACGTTCCCCAACACCTATACCGCACCTCATCATCCCGGAGCT
ACCCATCACTATGGAATGTGCCCGATGCCTGTCAATGACCTGGGCGCCAT
CGATCCCCAGCAGAAGTTCCAACAGTTGGTAGTGCCCACCGCCACAATGA
TCAGTGAGAAGAAGCTGAATAACAACAAGGCCCTGGTTTCACAGGGAGCC
ATCGACGACAGTGCCTCATTTGTGCTGCACATGAAGTCGGCCACCATGGG
TCGGGATGTGCATCAGCAGAATCCCCAGCTGAACCACTATACCAAGCCGC
AGTTCCTCTCGGCCACGGCTACAGTTGGTGATTCCTGCTACTCATACGCG
GATGTGCCCATGGTGCATGGCGCCCCGTTGGGTGGACCGAATCAGCCGCA
ACTGCGACTGACCCAAGAGCACTTCAAGCAGCGTGAGCTATACGATCAGG
AGATGGGCAGCGAGATCCTGGACCACAACTACATCTACAGCAATACCCAC
TACTCGATGCCGTTGGAGCAACTGGGTCGCAGCAAGACGCCCACGCCGCC
ACCGATGCCACCAGCTTTGCCCCTGCGGAATGGACTGTGTGCCACCACAG
GACGCAGATCCTTCCAGCAGAAGTCCGCCTCTCAGAAGCAGCAGCAGAAC
AACAACACCCTGCGTCAGTTCACGCACTGAAAGCTTTCTAGACCAT
BS07542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 2256 | CG11280-PB | 1..2214 | 17..2230 | 11070 | 100 | Plus |
| trn-RA | 2214 | CG11280-PA | 1..2214 | 17..2230 | 11070 | 100 | Plus |
| caps-RE | 2436 | CG11282-PE | 114..537 | 91..514 | 545 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..2799 | 17..2230 | 11070 | 100 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..2799 | 17..2230 | 11070 | 100 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 91..514 | 545 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13117511 | 17..2230 | 11070 | 100 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 91..514 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:51 has no hits.
BS07542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:46 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1..2214 | 17..2230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:34 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..2796 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:13 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..2798 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:47 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..2801 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:26 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..2798 | 17..2229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:26 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13117510 | 17..2229 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:13 Download gff for
BS07542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13110610 | 17..2229 | 100 | | Plus |
BS07542.pep Sequence
Translation from 16 to 2229
> BS07542.pep
MQRNMMIAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQL
DVLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQR
TFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTF
TPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQ
AMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGL
QELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQ
LKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQ
LKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWLHNLLVAK
NASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVG
SAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYM
SRHQHHPCSLGIHSTFPNTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQK
FQQLVVPTATMISEKKLNNNKALVSQGAIDDSASFVLHMKSATMGRDVHQ
QNPQLNHYTKPQFLSATATVGDSCYSYADVPMVHGAPLGGPNQPQLRLTQ
EHFKQRELYDQEMGSEILDHNYIYSNTHYSMPLEQLGRSKTPTPPPMPPA
LPLRNGLCATTGRRSFQQKSASQKQQQNNNTLRQFTH*
BS07542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-PB | 751 | CG11280-PB | 1..737 | 1..737 | 3839 | 100 | Plus |
| trn-PA | 737 | CG11280-PA | 1..737 | 1..737 | 3839 | 100 | Plus |
| caps-PD | 780 | CG11282-PD | 30..754 | 15..730 | 1732 | 51.4 | Plus |
| caps-PE | 811 | CG11282-PE | 30..754 | 15..730 | 1732 | 51.4 | Plus |
| caps-PB | 540 | CG11282-PB | 30..519 | 15..513 | 1600 | 63.7 | Plus |
