Clone BS07544 Report

Search the DGRC for BS07544

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptGalk-RA
Protein status:BS07544.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07544.3prime Sequence

902 bp (796 high quality bases) assembled on 2006-01-06

> BS07544.3prime
ATGGTCTAGAAAGCTTTCACTGTATATACAACTCGGCTCCGTTTCCTGGT
AGAGTGGCAAAGACCACTTCGCTAAAGTTGTTGGGCTGATGACGCTCCAG
GAGATGTGTTGGCAATTGAGCATAGTAATCGCGCTTCAAAACCTTTATGT
ACTCATCAGCTGCTTCTATGGAATCGCACATGGCAACTATACAACCGCCC
CAACCAGCTCCAGTGACTCGGGCGCTAACGTTCTGCTGGTTCGATATGGC
AATCAGGCGCTCTACATCAGGATGAGAGCATTCGTATAGCTCCCTTAAAC
TCTCGTGGGATTGCCGCATGAGCTCACCCAGCTGTTTTGCACCTTCCTTA
TTGGCTCCGCCGGCGAGTTCCTCACAAATTTTCCGGAATTTGGCCACGCG
ACCGGATTCCTGAATAACATGCAGAGCACGTTGACGCAGCTTGAACTGCT
CCATGTGCCGAGTGTTGGCGGATAGGAACTTGGTCTCCAGTTCCTGTTCG
GTGACTCCCAACTCCTTGCAGATATCCGCTCGCGTGTAGTTGCTCTTCGT
TAAGTTGTCCTTAATCAACTTCTCGAAAGTCTCATTATCCATTTGGCACG
CCTCCTCTAGATCAATGAAGCGCACAATATCCTCCCAGTTGATCAAGCCC
TTGCGCTTGGCCAGCCATCTAGTGGCCAATCGGCATTCCACCACTCGTTC
ATTGTAGTCCGACGAAGCAGCCTTGTTCTTTTGAGCCAGACTGTTGGCCA
CAACGAAGCACTTGCCCGCTGGCAAGGTCACCGGAGTGCCCTTGAGCTTG
GGATGGAACTCGATGTGGTGGGCGCAGCCAACTCTGCCCAAATAGGCTAT
TGCCTGATCCATACCACCACTGTGCGTTCCATGTACTGCTCACACATGGG
CG

BS07544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5288-PA 1473 CG5288-RA 609..1473 881..17 4325 100 Minus
CG5288-PB 1473 CG5288-RB 609..1473 881..17 4325 100 Minus
CG5288-PC 1473 CG5288-RC 609..1473 881..17 4325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 1019..1908 899..11 4410 99.8 Minus
Galk-RB 2053 CG5288-RB 1037..1926 899..11 4410 99.8 Minus
Galk-RA 2669 CG5288-RA 711..1600 899..11 4410 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8983934..8984425 409..899 2410 99.8 Plus
3L 28110227 3L 8983532..8983737 204..409 1030 100 Plus
3L 28110227 3L 8983281..8983474 11..204 955 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 12:36:14 has no hits.

BS07544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:59 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 587..1473 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:08 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 587..1473 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:43 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 708..1609 1..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:19 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 708..1609 1..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:19 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8983272..8983473 1..203 97 <- Plus
3L 8983532..8983736 204..408 100 <- Plus
3L 8983934..8984428 409..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:43 Download gff for BS07544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8976372..8976573 1..203 97 <- Plus
arm_3L 8976632..8976836 204..408 100 <- Plus
arm_3L 8977034..8977528 409..902 99   Plus

BS07544.5prime Sequence

900 bp (772 high quality bases) assembled on 2006-01-06

> BS07544.5prime
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGGCACTAGATGGCTGGGCAAG
CGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGATCTAGA

BS07544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5288-PA 1473 CG5288-RA 1..884 17..900 4370 99.7 Plus
CG5288-PB 1473 CG5288-RB 1..884 17..900 4370 99.7 Plus
CG5288-PC 1473 CG5288-RC 1..884 17..900 4370 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 428..1313 15..900 4400 99.8 Plus
Galk-RB 2053 CG5288-RB 446..1331 15..900 4400 99.8 Plus
Galk-RA 2669 CG5288-RA 120..1005 15..900 4400 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8984131..8984669 900..362 2665 99.6 Minus
3L 28110227 3L 8984813..8984988 363..188 880 100 Minus
3L 28110227 3L 8985052..8985227 190..15 880 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:21:13 has no hits.

BS07544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:00 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:09 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:54 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 116..1004 11..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:15 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 116..1004 11..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:15 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8984813..8984986 190..363 100 <- Minus
3L 8985053..8985231 11..189 98   Minus
3L 8984132..8984667 364..899 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:54 Download gff for BS07544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8977232..8977767 364..899 99 <- Minus
arm_3L 8977913..8978086 190..363 100 <- Minus
arm_3L 8978153..8978331 11..189 98   Minus

BS07544.complete Sequence

1505 bp (1505 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635902

> BS07544.complete
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGGCCAAG
CGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGATCTAGA
GGAGGCGTGCCAAATGGATAATGAGACTTTCGAGAAGTTGATTAAGGACA
ACTTAACGAAGAGCAACTACACGCGAGCGGATATCTGCAAGGAGTTGGGA
GTCACCGAACAGGAACTGGAGACCAAGTTCCTATCCGCCAACACTCGGCA
CATGGAGCAGTTCAAGCTGCGTCAACGTGCTCTGCATGTTATTCAGGAAT
CCGGTCGCGTGGCCAAATTCCGGAAAATTTGTGAGGAACTCGCCGGCGGA
GCCAATAAGGAAGGTGCAAAACAGCTGGGTGAGCTCATGCGGCAATCCCA
CGAGAGTTTAAGGGAGCTATACGAATGCTCTCATCCTGATGTAGAGCGCC
TGATTGCCATATCGAACCAGCAGAACGTTAGCGCCCGAGTCACTGGAGCT
GGTTGGGGCGGTTGTATAGTTGCCATGTGCGATTCCATAGAAGCAGCTGA
TGAGTACATAAAGGTTTTGAAGCGCGATTACTATGCTCAATTGCCAACAC
ATCTCCTGGAGCGTCATCAGCCCAACAACTTTAGCGAAGTGGTCTTTGCC
ACTCTACCAGGAAACGGAGCCGAGTTGTATATACAGTGAAAGCTTTCTAG
ACCAT

BS07544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 1473 CG5288-PD 1..1473 17..1489 7365 100 Plus
Galk-RB 1473 CG5288-PB 1..1473 17..1489 7365 100 Plus
Galk-RA 1473 CG5288-PA 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 428..1908 15..1495 7390 99.9 Plus
Galk-RB 2053 CG5288-RB 446..1926 15..1495 7390 99.9 Plus
Galk-RA 2669 CG5288-RA 120..1600 15..1495 7390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8983934..8984669 1097..362 3680 100 Minus
3L 28110227 3L 8983532..8983737 1302..1097 1030 100 Minus
3L 28110227 3L 8983281..8983474 1495..1302 955 99.5 Minus
3L 28110227 3L 8984813..8984988 363..188 880 100 Minus
3L 28110227 3L 8985052..8985227 190..15 880 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:08:57 has no hits.

BS07544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:30 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 1..1473 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:31 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 178..1676 7..1505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:43 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 122..1593 17..1488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:31 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 178..1676 7..1505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:57 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 122..1593 17..1488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:57 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8983288..8983473 1303..1488 100 <- Minus
3L 8983532..8983736 1098..1302 100 <- Minus
3L 8983934..8984667 364..1097 100 <- Minus
3L 8984813..8984986 190..363 100 <- Minus
3L 8985053..8985225 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:43 Download gff for BS07544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8976388..8976573 1303..1488 100 <- Minus
arm_3L 8976632..8976836 1098..1302 100 <- Minus
arm_3L 8977034..8977767 364..1097 100 <- Minus
arm_3L 8977913..8978086 190..363 100 <- Minus
arm_3L 8978153..8978325 17..189 100   Minus

BS07544.pep Sequence

Translation from 16 to 1488

> BS07544.pep
MTANGNGTAQDLGAGIEIVAPQKLQPESKVYGRVQQLTAFFKQQFGANPD
FIVRVPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNL
EEAKFTGYDADLKTLRIELPKSGGPAWYNYFLCGIKGIQESLGSQWKPIG
MRIAVDGNVPLAAGLSSSSAMVSSAVLATAHVQGKKLDRRELASISAMCE
QYIGTHSGGMDQAIAYLGRVGCAHHIEFHPKLKGTPVTLPAGKCFVVANS
LAQKNKAASSDYNERVVECRLATRWLAKRKGLINWEDIVRFIDLEEACQM
DNETFEKLIKDNLTKSNYTRADICKELGVTEQELETKFLSANTRHMEQFK
LRQRALHVIQESGRVAKFRKICEELAGGANKEGAKQLGELMRQSHESLRE
LYECSHPDVERLIAISNQQNVSARVTGAGWGGCIVAMCDSIEAADEYIKV
LKRDYYAQLPTHLLERHQPNNFSEVVFATLPGNGAELYIQ*

BS07544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-PD 490 CG5288-PD 1..490 1..490 2540 100 Plus
Galk-PB 490 CG5288-PB 1..490 1..490 2540 100 Plus
Galk-PA 490 CG5288-PA 1..490 1..490 2540 100 Plus
Galk-PC 490 CG5288-PC 1..490 1..490 2540 100 Plus