Clone Sequence Records
BS07544.3prime Sequence
902 bp (796 high quality bases) assembled on 2006-01-06
> BS07544.3prime
ATGGTCTAGAAAGCTTTCACTGTATATACAACTCGGCTCCGTTTCCTGGT
AGAGTGGCAAAGACCACTTCGCTAAAGTTGTTGGGCTGATGACGCTCCAG
GAGATGTGTTGGCAATTGAGCATAGTAATCGCGCTTCAAAACCTTTATGT
ACTCATCAGCTGCTTCTATGGAATCGCACATGGCAACTATACAACCGCCC
CAACCAGCTCCAGTGACTCGGGCGCTAACGTTCTGCTGGTTCGATATGGC
AATCAGGCGCTCTACATCAGGATGAGAGCATTCGTATAGCTCCCTTAAAC
TCTCGTGGGATTGCCGCATGAGCTCACCCAGCTGTTTTGCACCTTCCTTA
TTGGCTCCGCCGGCGAGTTCCTCACAAATTTTCCGGAATTTGGCCACGCG
ACCGGATTCCTGAATAACATGCAGAGCACGTTGACGCAGCTTGAACTGCT
CCATGTGCCGAGTGTTGGCGGATAGGAACTTGGTCTCCAGTTCCTGTTCG
GTGACTCCCAACTCCTTGCAGATATCCGCTCGCGTGTAGTTGCTCTTCGT
TAAGTTGTCCTTAATCAACTTCTCGAAAGTCTCATTATCCATTTGGCACG
CCTCCTCTAGATCAATGAAGCGCACAATATCCTCCCAGTTGATCAAGCCC
TTGCGCTTGGCCAGCCATCTAGTGGCCAATCGGCATTCCACCACTCGTTC
ATTGTAGTCCGACGAAGCAGCCTTGTTCTTTTGAGCCAGACTGTTGGCCA
CAACGAAGCACTTGCCCGCTGGCAAGGTCACCGGAGTGCCCTTGAGCTTG
GGATGGAACTCGATGTGGTGGGCGCAGCCAACTCTGCCCAAATAGGCTAT
TGCCTGATCCATACCACCACTGTGCGTTCCATGTACTGCTCACACATGGG
CG
BS07544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5288-PA | 1473 | CG5288-RA | 609..1473 | 881..17 | 4325 | 100 | Minus |
CG5288-PB | 1473 | CG5288-RB | 609..1473 | 881..17 | 4325 | 100 | Minus |
CG5288-PC | 1473 | CG5288-RC | 609..1473 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RD | 2035 | CG5288-RD | 1019..1908 | 899..11 | 4410 | 99.8 | Minus |
Galk-RB | 2053 | CG5288-RB | 1037..1926 | 899..11 | 4410 | 99.8 | Minus |
Galk-RA | 2669 | CG5288-RA | 711..1600 | 899..11 | 4410 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8983934..8984425 | 409..899 | 2410 | 99.8 | Plus |
3L | 28110227 | 3L | 8983532..8983737 | 204..409 | 1030 | 100 | Plus |
3L | 28110227 | 3L | 8983281..8983474 | 11..204 | 955 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:36:14 has no hits.
BS07544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:15:59 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-PC | 587..1473 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:08 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-PC | 587..1473 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:43 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 708..1609 | 1..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:19 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 708..1609 | 1..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:19 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8983272..8983473 | 1..203 | 97 | <- | Plus |
3L | 8983532..8983736 | 204..408 | 100 | <- | Plus |
3L | 8983934..8984428 | 409..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:43 Download gff for
BS07544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8976372..8976573 | 1..203 | 97 | <- | Plus |
arm_3L | 8976632..8976836 | 204..408 | 100 | <- | Plus |
arm_3L | 8977034..8977528 | 409..902 | 99 | | Plus |
BS07544.5prime Sequence
900 bp (772 high quality bases) assembled on 2006-01-06
> BS07544.5prime
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGGCACTAGATGGCTGGGCAAG
CGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGATCTAGA
BS07544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5288-PA | 1473 | CG5288-RA | 1..884 | 17..900 | 4370 | 99.7 | Plus |
CG5288-PB | 1473 | CG5288-RB | 1..884 | 17..900 | 4370 | 99.7 | Plus |
CG5288-PC | 1473 | CG5288-RC | 1..884 | 17..900 | 4370 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RD | 2035 | CG5288-RD | 428..1313 | 15..900 | 4400 | 99.8 | Plus |
Galk-RB | 2053 | CG5288-RB | 446..1331 | 15..900 | 4400 | 99.8 | Plus |
Galk-RA | 2669 | CG5288-RA | 120..1005 | 15..900 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8984131..8984669 | 900..362 | 2665 | 99.6 | Minus |
3L | 28110227 | 3L | 8984813..8984988 | 363..188 | 880 | 100 | Minus |
3L | 28110227 | 3L | 8985052..8985227 | 190..15 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:21:13 has no hits.
BS07544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:00 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-PC | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:09 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-PC | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:54 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 116..1004 | 11..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:15 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 116..1004 | 11..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:15 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8984813..8984986 | 190..363 | 100 | <- | Minus |
3L | 8985053..8985231 | 11..189 | 98 | | Minus |
3L | 8984132..8984667 | 364..899 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:54 Download gff for
BS07544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8977232..8977767 | 364..899 | 99 | <- | Minus |
arm_3L | 8977913..8978086 | 190..363 | 100 | <- | Minus |
arm_3L | 8978153..8978331 | 11..189 | 98 | | Minus |
BS07544.complete Sequence
1505 bp (1505 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635902
> BS07544.complete
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGGCCAAG
CGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGATCTAGA
GGAGGCGTGCCAAATGGATAATGAGACTTTCGAGAAGTTGATTAAGGACA
ACTTAACGAAGAGCAACTACACGCGAGCGGATATCTGCAAGGAGTTGGGA
GTCACCGAACAGGAACTGGAGACCAAGTTCCTATCCGCCAACACTCGGCA
CATGGAGCAGTTCAAGCTGCGTCAACGTGCTCTGCATGTTATTCAGGAAT
CCGGTCGCGTGGCCAAATTCCGGAAAATTTGTGAGGAACTCGCCGGCGGA
GCCAATAAGGAAGGTGCAAAACAGCTGGGTGAGCTCATGCGGCAATCCCA
CGAGAGTTTAAGGGAGCTATACGAATGCTCTCATCCTGATGTAGAGCGCC
TGATTGCCATATCGAACCAGCAGAACGTTAGCGCCCGAGTCACTGGAGCT
GGTTGGGGCGGTTGTATAGTTGCCATGTGCGATTCCATAGAAGCAGCTGA
TGAGTACATAAAGGTTTTGAAGCGCGATTACTATGCTCAATTGCCAACAC
ATCTCCTGGAGCGTCATCAGCCCAACAACTTTAGCGAAGTGGTCTTTGCC
ACTCTACCAGGAAACGGAGCCGAGTTGTATATACAGTGAAAGCTTTCTAG
ACCAT
BS07544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RD | 1473 | CG5288-PD | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Galk-RB | 1473 | CG5288-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Galk-RA | 1473 | CG5288-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RD | 2035 | CG5288-RD | 428..1908 | 15..1495 | 7390 | 99.9 | Plus |
Galk-RB | 2053 | CG5288-RB | 446..1926 | 15..1495 | 7390 | 99.9 | Plus |
Galk-RA | 2669 | CG5288-RA | 120..1600 | 15..1495 | 7390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8983934..8984669 | 1097..362 | 3680 | 100 | Minus |
3L | 28110227 | 3L | 8983532..8983737 | 1302..1097 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 8983281..8983474 | 1495..1302 | 955 | 99.5 | Minus |
3L | 28110227 | 3L | 8984813..8984988 | 363..188 | 880 | 100 | Minus |
3L | 28110227 | 3L | 8985052..8985227 | 190..15 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:08:57 has no hits.
BS07544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:30 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-RC | 1..1473 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:31 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-RC | 178..1676 | 7..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:43 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 122..1593 | 17..1488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:31 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5288-RC | 178..1676 | 7..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:57 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Galk-RA | 122..1593 | 17..1488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:57 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8983288..8983473 | 1303..1488 | 100 | <- | Minus |
3L | 8983532..8983736 | 1098..1302 | 100 | <- | Minus |
3L | 8983934..8984667 | 364..1097 | 100 | <- | Minus |
3L | 8984813..8984986 | 190..363 | 100 | <- | Minus |
3L | 8985053..8985225 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:43 Download gff for
BS07544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8976388..8976573 | 1303..1488 | 100 | <- | Minus |
arm_3L | 8976632..8976836 | 1098..1302 | 100 | <- | Minus |
arm_3L | 8977034..8977767 | 364..1097 | 100 | <- | Minus |
arm_3L | 8977913..8978086 | 190..363 | 100 | <- | Minus |
arm_3L | 8978153..8978325 | 17..189 | 100 | | Minus |
BS07544.pep Sequence
Translation from 16 to 1488
> BS07544.pep
MTANGNGTAQDLGAGIEIVAPQKLQPESKVYGRVQQLTAFFKQQFGANPD
FIVRVPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNL
EEAKFTGYDADLKTLRIELPKSGGPAWYNYFLCGIKGIQESLGSQWKPIG
MRIAVDGNVPLAAGLSSSSAMVSSAVLATAHVQGKKLDRRELASISAMCE
QYIGTHSGGMDQAIAYLGRVGCAHHIEFHPKLKGTPVTLPAGKCFVVANS
LAQKNKAASSDYNERVVECRLATRWLAKRKGLINWEDIVRFIDLEEACQM
DNETFEKLIKDNLTKSNYTRADICKELGVTEQELETKFLSANTRHMEQFK
LRQRALHVIQESGRVAKFRKICEELAGGANKEGAKQLGELMRQSHESLRE
LYECSHPDVERLIAISNQQNVSARVTGAGWGGCIVAMCDSIEAADEYIKV
LKRDYYAQLPTHLLERHQPNNFSEVVFATLPGNGAELYIQ*
BS07544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-PD | 490 | CG5288-PD | 1..490 | 1..490 | 2540 | 100 | Plus |
Galk-PB | 490 | CG5288-PB | 1..490 | 1..490 | 2540 | 100 | Plus |
Galk-PA | 490 | CG5288-PA | 1..490 | 1..490 | 2540 | 100 | Plus |
Galk-PC | 490 | CG5288-PC | 1..490 | 1..490 | 2540 | 100 | Plus |