Clone Sequence Records
BS07545.3prime Sequence
963 bp (901 high quality bases) assembled on 2006-01-06
> BS07545.3prime
ATGGTCTAGAAAGCTTCTAGATGATTTTGTGCAGGAACTTGAGGGGATGT
ACACCGGACTTGGGCTTGCCCAGTGTTGGTGGCGGTGGCGGTGTTAGAAC
CATGTCCAGTTCCATGGAGTTTGAGGAGCTAGTAGCCACCTCTCTGCCAC
TAGAACCGCTGCTGCATTGCATCGAACTGCTGCACGAGTGACTGGAGTTG
CTGGGCAGACACTGTCCGGTGACCAGTACAAACTCATCATCGTCCTCGGG
CAGTGTGAGTCCGCTGTCGCTGTCACAACTGAAACCAATGCCATCGTCGT
ACTCCTGATCCTCCACATGATGGTCCTGCTCCTGCTCTTCCTCCAGCTCC
TCTTCATCGTCTTCCTCCATTTGTTCGCCATCGTTCACATCCAACTCGAA
ATCACAGTCACACGTCTGCTTCGGCGAGTCCATCTGCGAATCAAAGTCGG
AATCGCCACCAACTGCGGCCTCCTCATCTCGGGTCTCATGCCCCAAGTTG
GGCGCCATTTGCCCGTCCGATGAGTAGGAGAAATCGCACATGAAATCATT
CTGTAATCCCACGAAAATCGCGCTCTTGGGCGCTTCCAGTATAAAGGAAT
CAATGTGATAGATTCCGTCACTCAACGCGGGCACGTCGCGTATTATCTTC
TGATCACGTATTATCTTGCGTATGCAATTGACGATGAACGTAATGACCAT
TCCGCCGAGTATCAGGCCAAACACAATCACGATGATGACCACGTGCTCCG
ATTGGCCGGCCGCCTCGCTCGTGCAGCCCTCCTCGTCCCATCGAAATTTA
CAATTGTCTAGGTTATTACATTTCAAATCCTTTGATATGCAGGTCGCGTC
CTCGCAATCGTACTCGTCCTCGGTGCAGGCAGCTCCACGTTCCCGGAACG
CCGTGAACAGATGCCAAATGTCGAGTAATCGCGGTTTGATCTGCGTAGAA
CGCAGGTGCAGGA
BS07545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32635-PA | 2034 | CG32635-RA | 1140..2034 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 3362 | CG44328-RA | 1681..2632 | 963..15 | 4670 | 99.6 | Minus |
| Neto-RB | 6903 | CG44328-RB | 1681..2011 | 963..636 | 1565 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13518274..13518896 | 637..15 | 3115 | 100 | Minus |
| X | 23542271 | X | 13506098..13506231 | 770..637 | 670 | 100 | Minus |
| X | 23542271 | X | 13504034..13504144 | 880..770 | 555 | 100 | Minus |
| X | 23542271 | X | 13502512..13502598 | 963..880 | 270 | 95.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:36:00 has no hits.
BS07545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:01 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1086..2034 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:11 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1086..2034 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:41 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 1682..2632 | 15..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:29:29 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 1682..2632 | 15..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:29:29 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13502513..13502598 | 880..962 | 95 | -> | Minus |
| X | 13504035..13504144 | 770..879 | 100 | -> | Minus |
| X | 13506099..13506230 | 638..769 | 100 | -> | Minus |
| X | 13518274..13518896 | 15..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:41 Download gff for
BS07545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13396546..13396631 | 880..962 | 95 | -> | Minus |
| arm_X | 13398068..13398177 | 770..879 | 100 | -> | Minus |
| arm_X | 13400132..13400263 | 638..769 | 100 | -> | Minus |
| arm_X | 13412307..13412929 | 15..637 | 100 | | Minus |
BS07545.5prime Sequence
947 bp (821 high quality bases) assembled on 2006-01-06
> BS07545.5prime
GAAGTTATCAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAAC
AACCACAGCAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAAT
CAAAGGTTAATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGT
TGGCCAAGCAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTT
CGGCTTCAGCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCC
ACGCCGCCTCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGT
GGCTGAGGGGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACG
AGCAGCATCCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAG
CGGCAGGCAGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGG
GGATCCCACCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATC
CGAAGAACATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATC
ATACGCCTGGACTTTCGCAACTCGTTTAATATCGAGGCCAAGGAGGGGTG
CAAATTTGATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGC
TGATTGGCAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAG
GAGCGGTATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACAC
CGGATTCAGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCA
GCACCGATCTCAACTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATC
AACTCCACGGATGTTCCCGGCGAGATCTGGGAGCAGGTCAATCGCAATAA
GATCGCGCTGGACTGCATCTGGCGCATTCAGGTCAAGGAGAATGGGA
BS07545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32635-PA | 2034 | CG32635-RA | 1..927 | 17..943 | 4585 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 6903 | CG44328-RB | 597..1527 | 17..947 | 4610 | 99.7 | Plus |
| Neto-RA | 3362 | CG44328-RA | 597..1527 | 17..947 | 4610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13495840..13496206 | 167..533 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500821 | 620..947 | 1595 | 99.1 | Plus |
| X | 23542271 | X | 13483136..13483286 | 17..167 | 755 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 530..619 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:09:30 has no hits.
BS07545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:02 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:13 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:20 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1526 | 8..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:41 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1526 | 8..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:41 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13483127..13483286 | 8..167 | 97 | -> | Plus |
| X | 13500494..13500820 | 620..946 | 99 | | Plus |
| X | 13495841..13496206 | 168..533 | 100 | -> | Plus |
| X | 13499798..13499883 | 534..619 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:20 Download gff for
BS07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377160..13377319 | 8..167 | 97 | -> | Plus |
| arm_X | 13394527..13394853 | 620..946 | 99 | | Plus |
| arm_X | 13389874..13390239 | 168..533 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 534..619 | 100 | -> | Plus |
BS07545.complete Sequence
2066 bp assembled on 2010-05-10
GenBank Submission: KX803696
> BS07545.complete
GAAGTTATCAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAAC
AACCACAGCAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAAT
CAAAGGTTAATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGT
TGGCCAAGCAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTT
CGGCTTCAGCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCC
ACGCCGCCTCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGT
GGCTGAGGGGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACG
AGCAGCATCCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAG
CGGCAGGCAGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGG
GGATCCCACCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATC
CGAAGAACATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATC
ATACGCCTGGACTTTCGCAACTCGTTTAATATCGAGGCCAAGGAGGGGTG
CAAATTTGATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGC
TGATTGGCAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAG
GAGCGGTATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACAC
CGGATTCAGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCA
GCACCGATCTCAACTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATC
AACTCCACGGATGTTCCGGCCGAGATCTGGGAGCAGGTCAATCGCAATAA
GATCGCGCTGGACTGCATCTGGCGCATTCAGGTCAAGGAGAATTGGAAGA
TATTTCTCAAGTTTCTGGACTTCAAGCTGAGCAAGCCGAACGATTGTCAA
ACCAACTTCCTGGATATATTCCCGGAGCAGACGGTGATGCCACTGAGGGT
TAAGAACTTTTGCGGTTCAGCTGGCGAGAGTATTACGGCGGAGTCAAATA
TCCTGCACTTGCGCTTCTACGCAGATCAAACCGCGATTAACTCGACATTT
GGCATTCTGTTCACGGCGTTCCGGGAACGTGGAGCTGCCTGCACCGAGGA
CGAGTACGATTGCGAGGACGCGACCTGCATATCAAAGGATTTGAAATGTA
ATAACCTAGACAATTGTAAATTTCGATGGGACGAGGAGGGCTGCACGAGC
GAGGCGGCCGGCCAATCGGAGCACGTGGTCATCATCGTGATTGTGTTTGG
CCTGATACTCGGCGGAATGGTCATTACGTTCATCGTCAATTGCATACGCA
AGATAATACGTGATCAGAAGATAATACGCGACGTGCCCGCGTTGAGTGAC
GGAATCTATCACATTGATTCCTTTATACTGGAAGCGCCCAAGAGCGCGAT
TTTCGTGGGATTACAGAATGATTTCATGTGCGATTTCTCCTACTCATCGG
ACGGGCAAATGGCGCCCAACTTGGGGCATGAGACCCGAGATGAGGAGGCC
GCAGTTGGTGGCGATTCCGACTTTGATTCGCAGATGGACTCGCCGAAGCA
GACGTGTGACTGTGATTTCGAGTTGGATGTGAACGATGGCGAACAAATGG
AGGAAGACGATGAAGAGGAGCTGGAGGAAGAGCAGGAGCAGGACCATCAT
GTGGAGGATCAGGAGTACGACGATGGCATTGGTTTCAGTTGTGACAGCGA
CAGCGGACTCACACTGCCCGAGGACGATGATGAGTTTGTACTGGTCACCG
GACAGTGTCTGCCCAGCAACTCCAGTCACTCGTGCAGCAGTTCGATGCAA
TGCAGCAGCGGTTCTAGTGGCAGAGAGGTGGCTACTAGCTCCTCAAACTC
CATGGAACTGGACATGGTTCTAACACCGCCACCGCCACCAACACTGGGCA
AGCCCAAGTCCGGTGTACATCCCCTCAAGTTCCTGCACAAAATCATCTAG
AAGCTTTCTAGACCAT
BS07545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 2034 | CG44328-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| Neto-RB | 2469 | CG44328-PB | 1..1415 | 17..1431 | 7075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RA | 3362 | CG44328-RA | 597..2632 | 17..2052 | 10180 | 100 | Plus |
| Neto-RB | 6903 | CG44328-RB | 597..2011 | 17..1431 | 7075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13518274..13518896 | 1430..2052 | 3115 | 100 | Plus |
| X | 23542271 | X | 13495840..13496206 | 167..533 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500823 | 620..949 | 1650 | 100 | Plus |
| X | 23542271 | X | 13483136..13483286 | 17..167 | 755 | 100 | Plus |
| X | 23542271 | X | 13502457..13502598 | 1046..1187 | 710 | 100 | Plus |
| X | 23542271 | X | 13506098..13506231 | 1297..1430 | 670 | 100 | Plus |
| X | 23542271 | X | 13504034..13504144 | 1187..1297 | 555 | 100 | Plus |
| X | 23542271 | X | 13500949..13501049 | 948..1048 | 505 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 530..619 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:57:10 has no hits.
BS07545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:49 Download gff for
BS07545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-RA | 594..2627 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:37 Download gff for
BS07545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 597..2630 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:06 Download gff for
BS07545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 597..2630 | 17..2050 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:06 Download gff for
BS07545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13499798..13499883 | 534..619 | 100 | -> | Plus |
| X | 13483136..13483286 | 17..167 | 100 | -> | Plus |
| X | 13495841..13496206 | 168..533 | 100 | -> | Plus |
| X | 13500494..13500823 | 620..949 | 100 | -> | Plus |
| X | 13500951..13501048 | 950..1047 | 100 | -> | Plus |
| X | 13502459..13502598 | 1048..1187 | 100 | -> | Plus |
| X | 13504035..13504144 | 1188..1297 | 100 | -> | Plus |
| X | 13506099..13506230 | 1298..1429 | 100 | -> | Plus |
| X | 13518274..13518894 | 1430..2050 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:37 Download gff for
BS07545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377169..13377319 | 17..167 | 100 | -> | Plus |
| arm_X | 13389874..13390239 | 168..533 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 534..619 | 100 | -> | Plus |
| arm_X | 13394527..13394856 | 620..949 | 100 | -> | Plus |
| arm_X | 13394984..13395081 | 950..1047 | 100 | -> | Plus |
| arm_X | 13396492..13396631 | 1048..1187 | 100 | -> | Plus |
| arm_X | 13398068..13398177 | 1188..1297 | 100 | -> | Plus |
| arm_X | 13400132..13400263 | 1298..1429 | 100 | -> | Plus |
| arm_X | 13412307..13412927 | 1430..2050 | 100 | | Plus |
BS07545.pep Sequence
Translation from 16 to 2049
> BS07545.pep
MRRRGSTCSAQQPQQRPHKQQQQQQQQNQRLIPGQRCSLLMLLIVGQAVY
ASAGSEIIANRSASAGESLIMLSNFTVATPPPAPRFTSPFREQDVAEGEE
LAGGGQVDWLDEQHPLTISRPPRAGRSERQAEEDQVDRCRLFVEGDPTKN
ELYSPEYPNLYPKNINCTRVITAPKGQIIRLDFRNSFNIEAKEGCKFDFL
EIRDGQYGFSTLIGKFCGTDFPPEITSKERYLWLHFHSDETIEYTGFSAV
YEYLDRSRDAPSTDLNCTIDKGGFEGFINSTDVPAEIWEQVNRNKIALDC
IWRIQVKENWKIFLKFLDFKLSKPNDCQTNFLDIFPEQTVMPLRVKNFCG
SAGESITAESNILHLRFYADQTAINSTFGILFTAFRERGAACTEDEYDCE
DATCISKDLKCNNLDNCKFRWDEEGCTSEAAGQSEHVVIIVIVFGLILGG
MVITFIVNCIRKIIRDQKIIRDVPALSDGIYHIDSFILEAPKSAIFVGLQ
NDFMCDFSYSSDGQMAPNLGHETRDEEAAVGGDSDFDSQMDSPKQTCDCD
FELDVNDGEQMEEDDEEELEEEQEQDHHVEDQEYDDGIGFSCDSDSGLTL
PEDDDEFVLVTGQCLPSNSSHSCSSSMQCSSGSSGREVATSSSNSMELDM
VLTPPPPPTLGKPKSGVHPLKFLHKII*
BS07545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-PA | 677 | CG44328-PA | 1..677 | 1..677 | 3604 | 100 | Plus |
| Neto-PB | 822 | CG44328-PB | 1..472 | 1..472 | 2506 | 99.8 | Plus |
| tld-PA | 1067 | CG6868-PA | 492..746 | 154..378 | 250 | 29.6 | Plus |
| tok-PC | 1464 | CG6863-PC | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PA | 1464 | CG6863-PA | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 1169..1434 | 152..423 | 202 | 23 | Plus |
| tld-PA | 1067 | CG6868-PA | 618..873 | 123..350 | 192 | 25.1 | Plus |
| tld-PA | 1067 | CG6868-PA | 389..578 | 166..372 | 184 | 27.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 751..1003 | 166..436 | 183 | 24.5 | Plus |
| tld-PA | 1067 | CG6868-PA | 895..1049 | 124..280 | 163 | 28.9 | Plus |
