Clone BS07546 Report

Search the DGRC for BS07546

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptIrk2-RA
Protein status:BS07546.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07546.3prime Sequence

784 bp (783 high quality bases) assembled on 2006-01-06

> BS07546.3prime
ATGGTCTAGAAAGCTTCTAGGAGGCCTGGTCAGAATGATTGTGGGACAGT
TGACGCATGGTAAAGGTGGTTTCTGGTGTGCGGAATCCCTCCTGGATCTT
GTAGATCTCGTTCAATTCCCGAGCACTGCACAACGGAGTGTCCACCTGAG
TGGTTTCGTTAAAGCGAGCGTAGTCGATTTCATAGGCCTGCAGATCCTTG
TTGTACAACACCACTGGATCGAAACGATGTCCCCAAAGGATCTCAGTGTT
AATATAGCTGGATCTGGCTTGAGTGCTCTGTCCAGTGGACTCCACGGTGC
CCTCTAGGATCACCACGATTTCGAACTTATCCTGCAGCATATCAGTGGCA
TTAAGATTATAGAGCGGTGAGTTCTCGTCGATCTTGTGCTCGATGACCAT
GGGCCAGATGAAGAACAAATCAGAGCCGGAGTCATCAGTACCGATCTCCA
GTTCTGTGAAGTACTGTGTCATCACCTCACCCTCCTTGGTGCTCTTTGTC
CTGATCAACTGAGCCCTCACTCCGGCTCCAATGATGTGTGATTTTCGCAT
GTCACCCACACGGAACATCAGCGAAAGGGTGCCATCACGTTGGCAAATTA
CGGCGTGTTTGGAGAACAACAAAGTCTGTGCCCGCTGTTTGGCCCTTGTC
ATCTTGGCAAACACTATTCCGGCCATAAATGCTGAAGACATCACGCCATA
GATGGACTGGAAGCACATCATGAAGATGGCCTCTGGACACTCGGGCGAGG
TGGTTCGGACACCGTAGCCAATAGTGTGCTGCGT

BS07546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4370-PA 1362 Irk2-RA 595..1362 784..17 3840 100 Minus
CG4370-PB 1314 Irk2-RB 547..1314 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-RB 1600 CG4370-RB 596..1363 784..17 3840 100 Minus
Irk2-RA 1894 CG4370-RA 890..1657 784..17 3840 100 Minus
Irk2-RD 2248 CG4370-RD 890..1660 784..17 3800 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23514377..23515088 73..784 3560 100 Plus
3R 32079331 3R 23514268..23514326 17..75 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:17:04 has no hits.

BS07546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:03 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-PB 547..1314 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:14 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4370-PB 547..1314 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:19 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 890..1659 13..784 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:57 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 890..1659 13..784 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:57 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23514264..23514323 13..72 96 <- Plus
3R 23514377..23515088 73..784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:19 Download gff for BS07546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19339986..19340045 13..72 96 <- Plus
arm_3R 19340099..19340810 73..784 100   Plus

BS07546.5prime Sequence

900 bp (870 high quality bases) assembled on 2006-01-06

> BS07546.5prime
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTT
GCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGA
AAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAA

BS07546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4370-PA 1362 Irk2-RA 1..884 17..900 4420 100 Plus
CG4370-PB 1314 Irk2-RB 200..836 264..900 3185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-RD 2248 CG4370-RD 296..1179 17..900 4420 100 Plus
Irk2-RA 1894 CG4370-RA 296..1179 17..900 4420 100 Plus
Irk2-RC 1485 CG4370-RC 249..885 264..900 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23514799..23515161 900..538 1815 100 Minus
3R 32079331 3R 23515213..23515490 539..262 1390 100 Minus
3R 32079331 3R 23518458..23518705 264..17 1240 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:56:02 has no hits.

BS07546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:04 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:16 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4370-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:19 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1176 17..897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:35:29 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1176 17..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:35:29 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23514802..23515159 540..897 100 <- Minus
3R 23515213..23515487 265..539 100 <- Minus
3R 23518458..23518710 9..264 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:19 Download gff for BS07546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19340524..19340881 540..897 100 <- Minus
arm_3R 19340935..19341209 265..539 100 <- Minus
arm_3R 19344180..19344432 9..264 98   Minus

BS07546.complete Sequence

1394 bp (1394 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635903

> BS07546.complete
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTT
GCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGA
AAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAA
GAGCACCAAGGAGGGTGAGGTGATGACACAGTACTTCACAGAACTGGAGA
TCGGTACTGATGACTCCGGCTCTGATTTGTTCTTCATCTGGCCCATGGTC
ATCGAGCACAAGATCGACGAGAACTCACCGCTCTATAATCTTAATGCCAC
TGATATGCTGCAGGATAAGTTCGAAATCGTGGTGATCCTAGAGGGCACCG
TGGAGTCCACTGGACAGAGCACTCAAGCCAGATCCAGCTATATTAACACT
GAGATCCTTTGGGGACATCGTTTCGATCCAGTGGTGTTGTACAACAAGGA
TCTGCAGGCCTATGAAATCGACTACGCTCGCTTTAACGAAACCACTCAGG
TGGACACTCCGTTGTGCAGTGCTCGGGAATTGAACGAGATCTACAAGATC
CAGGAGGGATTCCGCACACCAGAAACCACCTTTACCATGCGTCAACTGTC
CCACAATCATTCTGACCAGGCCTCCTAGAAGCTTTCTAGACCAT

BS07546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-RA 1362 CG4370-PA 1..1362 17..1378 6810 100 Plus
Irk2-RD 1365 CG4370-PD 1..1365 17..1378 6745 99.8 Plus
Irk2-RB 1314 CG4370-PB 200..1314 264..1378 5575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-RA 1894 CG4370-RA 296..1657 17..1378 6810 100 Plus
Irk2-RD 2248 CG4370-RD 296..1660 17..1378 6745 99.8 Plus
Irk2-RB 1600 CG4370-RB 249..1363 264..1378 5575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23514377..23515161 1322..538 3925 100 Minus
3R 32079331 3R 23515213..23515490 539..262 1390 100 Minus
3R 32079331 3R 23518458..23518705 264..17 1240 100 Minus
3R 32079331 3R 23514268..23514326 1378..1320 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:02 has no hits.

BS07546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:32 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 1..1362 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:32 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1659 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:30 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1657 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:32 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1659 17..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:16 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
Irk2-RA 296..1657 17..1378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:16 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23514268..23514323 1323..1378 100 <- Minus
3R 23514377..23515159 540..1322 100 <- Minus
3R 23515213..23515487 265..539 100 <- Minus
3R 23518458..23518705 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:30 Download gff for BS07546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19340935..19341209 265..539 100 <- Minus
arm_3R 19339990..19340045 1323..1378 100 <- Minus
arm_3R 19340099..19340881 540..1322 100 <- Minus
arm_3R 19344180..19344427 17..264 100   Minus

BS07546.pep Sequence

Translation from 16 to 1377

> BS07546.pep
MRFNFSTHSAAPTSTTIPTTTQANGGEQATQPLKKAIEADPDSLDSVISN
PQSYPITIVPNRPTSYYGLSQNGKPFPRQPSCRSRNFRPGSMRRVRRRAV
FKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLF
FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQ
HTIGYGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRA
QTLLFSKHAVICQRDGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEG
EVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQD
KFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYE
IDYARFNETTQVDTPLCSARELNEIYKIQEGFRTPETTFTMRQLSHNHSD
QAS*

BS07546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Irk2-PA 453 CG4370-PA 1..453 1..453 2396 100 Plus
Irk2-PD 454 CG4370-PD 1..454 1..453 2384 99.8 Plus
Irk2-PB 437 CG4370-PB 68..437 84..453 1957 100 Plus
Irk2-PC 451 CG4370-PC 68..429 84..445 1868 97.8 Plus
Irk1-PH 526 CG44159-PH 10..348 91..425 1066 60.2 Plus