Clone Sequence Records
BS07546.3prime Sequence
784 bp (783 high quality bases) assembled on 2006-01-06
> BS07546.3prime
ATGGTCTAGAAAGCTTCTAGGAGGCCTGGTCAGAATGATTGTGGGACAGT
TGACGCATGGTAAAGGTGGTTTCTGGTGTGCGGAATCCCTCCTGGATCTT
GTAGATCTCGTTCAATTCCCGAGCACTGCACAACGGAGTGTCCACCTGAG
TGGTTTCGTTAAAGCGAGCGTAGTCGATTTCATAGGCCTGCAGATCCTTG
TTGTACAACACCACTGGATCGAAACGATGTCCCCAAAGGATCTCAGTGTT
AATATAGCTGGATCTGGCTTGAGTGCTCTGTCCAGTGGACTCCACGGTGC
CCTCTAGGATCACCACGATTTCGAACTTATCCTGCAGCATATCAGTGGCA
TTAAGATTATAGAGCGGTGAGTTCTCGTCGATCTTGTGCTCGATGACCAT
GGGCCAGATGAAGAACAAATCAGAGCCGGAGTCATCAGTACCGATCTCCA
GTTCTGTGAAGTACTGTGTCATCACCTCACCCTCCTTGGTGCTCTTTGTC
CTGATCAACTGAGCCCTCACTCCGGCTCCAATGATGTGTGATTTTCGCAT
GTCACCCACACGGAACATCAGCGAAAGGGTGCCATCACGTTGGCAAATTA
CGGCGTGTTTGGAGAACAACAAAGTCTGTGCCCGCTGTTTGGCCCTTGTC
ATCTTGGCAAACACTATTCCGGCCATAAATGCTGAAGACATCACGCCATA
GATGGACTGGAAGCACATCATGAAGATGGCCTCTGGACACTCGGGCGAGG
TGGTTCGGACACCGTAGCCAATAGTGTGCTGCGT
BS07546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4370-PA | 1362 | Irk2-RA | 595..1362 | 784..17 | 3840 | 100 | Minus |
CG4370-PB | 1314 | Irk2-RB | 547..1314 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Irk2-RB | 1600 | CG4370-RB | 596..1363 | 784..17 | 3840 | 100 | Minus |
Irk2-RA | 1894 | CG4370-RA | 890..1657 | 784..17 | 3840 | 100 | Minus |
Irk2-RD | 2248 | CG4370-RD | 890..1660 | 784..17 | 3800 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23514377..23515088 | 73..784 | 3560 | 100 | Plus |
3R | 32079331 | 3R | 23514268..23514326 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:04 has no hits.
BS07546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:03 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-PB | 547..1314 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:14 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4370-PB | 547..1314 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:19 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 890..1659 | 13..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:57 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 890..1659 | 13..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:57 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23514264..23514323 | 13..72 | 96 | <- | Plus |
3R | 23514377..23515088 | 73..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:19 Download gff for
BS07546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19339986..19340045 | 13..72 | 96 | <- | Plus |
arm_3R | 19340099..19340810 | 73..784 | 100 | | Plus |
BS07546.5prime Sequence
900 bp (870 high quality bases) assembled on 2006-01-06
> BS07546.5prime
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTT
GCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGA
AAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAA
BS07546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4370-PA | 1362 | Irk2-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
CG4370-PB | 1314 | Irk2-RB | 200..836 | 264..900 | 3185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Irk2-RD | 2248 | CG4370-RD | 296..1179 | 17..900 | 4420 | 100 | Plus |
Irk2-RA | 1894 | CG4370-RA | 296..1179 | 17..900 | 4420 | 100 | Plus |
Irk2-RC | 1485 | CG4370-RC | 249..885 | 264..900 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23514799..23515161 | 900..538 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 23515213..23515490 | 539..262 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 23518458..23518705 | 264..17 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:56:02 has no hits.
BS07546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:04 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:16 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4370-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:19 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1176 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:35:29 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1176 | 17..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:35:29 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23514802..23515159 | 540..897 | 100 | <- | Minus |
3R | 23515213..23515487 | 265..539 | 100 | <- | Minus |
3R | 23518458..23518710 | 9..264 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:19 Download gff for
BS07546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19340524..19340881 | 540..897 | 100 | <- | Minus |
arm_3R | 19340935..19341209 | 265..539 | 100 | <- | Minus |
arm_3R | 19344180..19344432 | 9..264 | 98 | | Minus |
BS07546.complete Sequence
1394 bp (1394 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635903
> BS07546.complete
GAAGTTATCAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCC
CCACCTCTACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAG
GCCACCCAACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGA
CAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATA
GGCCGACCAGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGC
CAACCGAGCTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGT
TCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGC
ACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATG
GTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTAT
CCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACAC
ACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGT
TGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTT
CTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGC
CCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGC
GTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAG
GGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTT
GCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGA
AAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAA
GAGCACCAAGGAGGGTGAGGTGATGACACAGTACTTCACAGAACTGGAGA
TCGGTACTGATGACTCCGGCTCTGATTTGTTCTTCATCTGGCCCATGGTC
ATCGAGCACAAGATCGACGAGAACTCACCGCTCTATAATCTTAATGCCAC
TGATATGCTGCAGGATAAGTTCGAAATCGTGGTGATCCTAGAGGGCACCG
TGGAGTCCACTGGACAGAGCACTCAAGCCAGATCCAGCTATATTAACACT
GAGATCCTTTGGGGACATCGTTTCGATCCAGTGGTGTTGTACAACAAGGA
TCTGCAGGCCTATGAAATCGACTACGCTCGCTTTAACGAAACCACTCAGG
TGGACACTCCGTTGTGCAGTGCTCGGGAATTGAACGAGATCTACAAGATC
CAGGAGGGATTCCGCACACCAGAAACCACCTTTACCATGCGTCAACTGTC
CCACAATCATTCTGACCAGGCCTCCTAGAAGCTTTCTAGACCAT
BS07546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Irk2-RA | 1362 | CG4370-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Irk2-RD | 1365 | CG4370-PD | 1..1365 | 17..1378 | 6745 | 99.8 | Plus |
Irk2-RB | 1314 | CG4370-PB | 200..1314 | 264..1378 | 5575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Irk2-RA | 1894 | CG4370-RA | 296..1657 | 17..1378 | 6810 | 100 | Plus |
Irk2-RD | 2248 | CG4370-RD | 296..1660 | 17..1378 | 6745 | 99.8 | Plus |
Irk2-RB | 1600 | CG4370-RB | 249..1363 | 264..1378 | 5575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23514377..23515161 | 1322..538 | 3925 | 100 | Minus |
3R | 32079331 | 3R | 23515213..23515490 | 539..262 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 23518458..23518705 | 264..17 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 23514268..23514326 | 1378..1320 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:25:02 has no hits.
BS07546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:32 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 1..1362 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:32 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1659 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:30 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1657 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:32 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1659 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:16 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Irk2-RA | 296..1657 | 17..1378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:16 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23514268..23514323 | 1323..1378 | 100 | <- | Minus |
3R | 23514377..23515159 | 540..1322 | 100 | <- | Minus |
3R | 23515213..23515487 | 265..539 | 100 | <- | Minus |
3R | 23518458..23518705 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:30 Download gff for
BS07546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19340935..19341209 | 265..539 | 100 | <- | Minus |
arm_3R | 19339990..19340045 | 1323..1378 | 100 | <- | Minus |
arm_3R | 19340099..19340881 | 540..1322 | 100 | <- | Minus |
arm_3R | 19344180..19344427 | 17..264 | 100 | | Minus |
BS07546.pep Sequence
Translation from 16 to 1377
> BS07546.pep
MRFNFSTHSAAPTSTTIPTTTQANGGEQATQPLKKAIEADPDSLDSVISN
PQSYPITIVPNRPTSYYGLSQNGKPFPRQPSCRSRNFRPGSMRRVRRRAV
FKNGDCNVVQKHLQRRRVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLF
FALIWWLIIYTHGDLEEPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQ
HTIGYGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRA
QTLLFSKHAVICQRDGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEG
EVMTQYFTELEIGTDDSGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQD
KFEIVVILEGTVESTGQSTQARSSYINTEILWGHRFDPVVLYNKDLQAYE
IDYARFNETTQVDTPLCSARELNEIYKIQEGFRTPETTFTMRQLSHNHSD
QAS*
BS07546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Irk2-PA | 453 | CG4370-PA | 1..453 | 1..453 | 2396 | 100 | Plus |
Irk2-PD | 454 | CG4370-PD | 1..454 | 1..453 | 2384 | 99.8 | Plus |
Irk2-PB | 437 | CG4370-PB | 68..437 | 84..453 | 1957 | 100 | Plus |
Irk2-PC | 451 | CG4370-PC | 68..429 | 84..445 | 1868 | 97.8 | Plus |
Irk1-PH | 526 | CG44159-PH | 10..348 | 91..425 | 1066 | 60.2 | Plus |