Clone BS07549 Report

Search the DGRC for BS07549

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)82Fd-RD
Protein status:BS07549.pep: full length peptide match
Sequenced Size:2069

Clone Sequence Records

BS07549.3prime Sequence

879 bp (775 high quality bases) assembled on 2006-01-06

> BS07549.3prime
ATGGTCTAGAAAGCTTTCACCTTGAGAATACTTTCGAAAATACACTTTGG
TTGGAGTCACCCGTGTTGGGCGCCGAGTCTGTGTCTCCCGACTTGTTCAG
GCTTCCACTGCCCACGCCGCCGGGCGGCACGGCACCACCCTCCCCAGTCA
AGCCCTCCACCCAGGTCAGGGGGTATGAGAGACGTTTAAGCATCTTGTTC
TTCTTGTCGGCCTGCTTGTCTGTGACAGCCAGTGCAGCCGACTGGGCCTG
AGCCTGCTGGGCGGCCTCGTCGTCGACGCTGAAGCTCACGCTTGAGGTCT
TCTTACGGACGCCCCCTGCGCCTCCTGTGCCGGCGTCGAGACTCTGGCCG
AGGATGGTGCTGCGCGGCGGGGACTCGCTGAAGTGCGTCGGCACAATGGT
TTTCGGTGGTACCCAGTCGGAGCTGAGGACAATGTCCGCGTCGCTGTAGA
CGGTTTTTTTTGGTATCGGCTGTACGTTGGGAACGGGCTCGCGGATATCG
ATGCCCGAGTCGTAGCACGACTGCTTGGACAGCTGCTCCAAGTGCTCCAG
ATCAATGCCCGAGGGAGGCAGAGGAACGACGGCGGAGGCGGGTGCGACGG
CAGCGGCAGCTGCAGCAGCAGCCACAGGGGGCTGGCTAAGCGGCACGCCG
CTGACCGAACTATTGGCCGAGTGCGGATCCTGGACTCGTGCGCCACTGTC
TACGGTAACGTTTGACTCGTTGTCGCCCTCATCTTCCGAGGATCGGTCTT
TGCTCGGAATGGCCCAGTGGTGATCCAACAAACTCTTGCGCCGCTCCTCG
AGGGTGGAGCGAGTGCTGGAGAGGCCCAGGCCGGCCTTCTTGTCTTCATC
GTCTAGAGCGTCAGTCTTAGCGCTATCTT

BS07549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32464-PD 2037 l(3)82Fd-RD 1175..2037 879..17 4315 100 Minus
CG32464-PO 3078 l(3)82Fd-RO 1115..1973 879..21 4295 100 Minus
CG32464-PP 3945 l(3)82Fd-RP 1850..2708 879..21 4295 100 Minus
CG32464-PN 3813 l(3)82Fd-RN 1850..2708 879..21 4295 100 Minus
CG32464-PM 3039 l(3)82Fd-RM 1076..1934 879..21 4295 100 Minus
CG32464-PB 3813 l(3)82Fd-RB 1850..2708 879..21 4295 100 Minus
CG32464-PJ 3813 l(3)82Fd-RJ 1850..2708 879..21 4295 100 Minus
CG32464-PL 3813 l(3)82Fd-RL 1850..2708 879..21 4295 100 Minus
CG32464-PK 3168 l(3)82Fd-RK 1115..1973 879..21 4295 100 Minus
CG32464-PF 2610 l(3)82Fd-RF 647..1505 879..21 4295 100 Minus
CG32464-PG 3102 l(3)82Fd-RG 1274..1997 744..21 3620 100 Minus
CG32464-PG 3102 l(3)82Fd-RG 1115..1250 879..744 680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 6314 CG32464-RW 3129..3987 879..21 4295 100 Minus
mtd-RV 5689 CG32464-RV 2504..3362 879..21 4295 100 Minus
mtd-RU 5169 CG32464-RU 2206..3064 879..21 4295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5294306..5294856 194..744 2755 100 Plus
3R 32079331 3R 5294058..5294236 17..195 895 100 Plus
3R 32079331 3R 5295641..5295776 744..879 680 100 Plus
Blast to na_te.dros performed 2015-02-12 19:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2369 572..627 109 66.1 Plus

BS07549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:10 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1175..2037 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:23 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1175..2037 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:04 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RU 2206..3064 21..879 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:57 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RU 2206..3064 21..879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:57 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5294058..5294234 17..193 100 <- Plus
3R 5294306..5294855 194..743 100 <- Plus
3R 5295641..5295776 744..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:04 Download gff for BS07549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1119780..1119956 17..193 100 <- Plus
arm_3R 1120028..1120577 194..743 100 <- Plus
arm_3R 1121363..1121498 744..879 100   Plus

BS07549.5prime Sequence

916 bp (864 high quality bases) assembled on 2006-01-06

> BS07549.5prime
GAAGTTATCAGTCGACATGGAGCACGCCGGCGCGCCAATCTCCACGTCCG
CCTCGAACATAGCCACCGTGCTGGAGGACGGCGAGAACCAGCAGCTGCCG
CCCTTGACGGGATCGGGACCTAGTCGCCAGAGATCTCTGAGGGATCGGCT
CAAGGACGGCATCACCGGCAGCTTCTCCTGGCAGAGCAAATCGCGCAGCG
TGGATCACGGCCTTGCGGCTCCATTCGACTTGGACTCGCTCCGCTCCAAA
GTGGAGCAGCGCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTC
ATTGCCCACCATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCC
TGACCTCCGTGGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCAC
CTCAACCGGCTGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGT
GCCGGACAAGAGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACG
CGGACGGTGCCAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTG
TCCGGCGACGAGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGG
ATCCCCAAAACCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGC
AGCAGGCGGAGGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAG
CGCTTCCTCAAGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGT
GGGCGGCGTCCTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACG
TCAGCGATCCCCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATT
GCGCCCATGGAGCTGGTGGTCAACGCCGCCCTCTTCCACGACATTGCGCA
CATGCGAGTGGCCGGA

BS07549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32464-PD 2037 l(3)82Fd-RD 1..900 17..916 4475 99.8 Plus
CG32464-PO 3078 l(3)82Fd-RO 108..840 184..916 3640 99.8 Plus
CG32464-PP 3945 l(3)82Fd-RP 843..1575 184..916 3640 99.8 Plus
CG32464-PN 3813 l(3)82Fd-RN 843..1575 184..916 3640 99.8 Plus
CG32464-PG 3102 l(3)82Fd-RG 108..840 184..916 3640 99.8 Plus
CG32464-PB 3813 l(3)82Fd-RB 843..1575 184..916 3640 99.8 Plus
CG32464-PJ 3813 l(3)82Fd-RJ 843..1575 184..916 3640 99.8 Plus
CG32464-PL 3813 l(3)82Fd-RL 843..1575 184..916 3640 99.8 Plus
CG32464-PK 3168 l(3)82Fd-RK 108..840 184..916 3640 99.8 Plus
CG32464-PM 3039 l(3)82Fd-RM 172..801 287..916 3125 99.8 Plus
CG32464-PF 2610 l(3)82Fd-RF 30..372 574..916 1690 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RZ 3738 CG32464-RZ 1592..2492 16..916 4490 99.9 Plus
mtd-RX 5976 CG32464-RX 1592..2492 16..916 4490 99.9 Plus
mtd-RW 6314 CG32464-RW 1954..2854 16..916 4490 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5296295..5296637 916..574 1700 99.7 Minus
3R 32079331 3R 5298202..5298489 575..288 1440 100 Minus
3R 32079331 3R 5334404..5334572 184..16 845 100 Minus
3R 32079331 3R 5299469..5299573 288..184 525 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:04:33 has no hits.

BS07549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:11 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:24 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:58 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RW 1950..2853 13..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:27 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RW 1950..2853 13..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:27 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5296296..5296635 576..915 99 <- Minus
3R 5298202..5298489 288..575 100 <- Minus
3R 5299470..5299573 184..287 100 <- Minus
3R 5334405..5334576 13..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:58 Download gff for BS07549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1123924..1124211 288..575 100 <- Minus
arm_3R 1125192..1125295 184..287 100 <- Minus
arm_3R 1122018..1122357 576..915 99 <- Minus
arm_3R 1160127..1160298 13..183 99   Minus

BS07549.complete Sequence

2069 bp assembled on 2010-05-10

GenBank Submission: KX803808

> BS07549.complete
GAAGTTATCAGTCGACATGGAGCACGCCGGCGCGCCAATCTCCACGTCCG
CCTCGAACATAGCCACCGTGCTGGAGGACGGCGAGAACCAGCAGCTGCCG
CCCTTGACGGGATCGGGACCTAGTCGCCAGAGATCTCTGAGGGATCGGCT
CAAGGACGGCATCACCGGCAGCTTCTCCTGGCAGAGCAAATCGCGCAGCG
TGGATCACGGCCTTGCGGCTCCATTCGACTTGGACTCGCTCCGCTCCAAA
GTGGAGCAGCGCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTC
ATTGCCCACCATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCC
TGACCTCCGTGGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCAC
CTCAACCGGCTGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGT
GCCGGACAAGAGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACG
CGGACGGTGCCAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTG
TCCGGCGACGAGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGG
ATCCCCAAAACCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGC
AGCAGGCGGAGGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAG
CGCTTCCTCAAGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGT
GGGCGGCGTCCTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACG
TCAGCGATCCCCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATT
GCGCCCATGGAGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCGCA
CATGCGAGTGGCCGGAGGAGCAGGTCAGGGCCTGAACTCCGCCTCGGGAG
ACGCGGAGAAACCGGAAATCTACTATCCCAAACCAGTATTAGTCGAAGAA
GACTCCAAGGAGCTACCCGAGCAGCAGTCGCTGCTGGGCGAAGACGGTAA
TAAGCGCTTAGATGCAGAAATAGGGTCGCTGGAAATCGCTGACGACCAAG
AGTCGCTTTGCTCCAGCACTGGACGCGATGGCGACGCGTTTCCCAAAGCC
TTCGACCGCGAACGTGTGGAGGACTCTTCTATGGAAGCCAAAGATAGCGC
TAAGACTGACGCTCTAGACGATGAAGACAAGAAGGCCGGCCTGGGCCTCT
CCAGCACTCGCTCCACCCTCGAGGAGCGGCGCAAGAGTTTGTTGGATCAC
CACTGGGCCATTCCGAGCAAAGACCGATCCTCGGAAGATGAGGGCGACAA
CGAGTCAAACGTTACCGTAGACAGTGGCGCACGAGTCCAGGATCCGCACT
CGGCCAATAGTTCGGTCAGCGGCGTGCCGCTTAGCCAGCCCCCTGTGGCT
GCTGCTGCAGCTGCCGCTGCCGTCGCACCCGCCTCCGCCGTCGTTCCTCT
GCCTCCCTCGGGCATTGATCTGGAGCACTTGGAGCAGCTGTCCAAGCAGT
CGTGCTACGACTCGGGCATCGATATCCGCGAGCCCGTTCCCAACGTACAG
CCGATACCAAAAAAAACCGTCTACAGCGACGCGGACATTGTCCTCAGCTC
CGACTGGGTACCACCGAAAACCATTGTGCCGACGCACTTCAGCGAGTCCC
CGCCGCGCAGCACCATCCTCGGCCAGAGTCTCGACGCCGGCACAGGAGGC
GCAGGGGGCGTCCGTAAGAAGACCTCAAGCGTGAGCTTCAGCGTCGACGA
CGAGGCCGCCCAGCAGGCTCAGGCCCAGTCGGCTGCACTGGCTGTCACAG
ACAAGCAGGCCGACAAGAAGAACAAGATGCTTAAACGTCTCTCATACCCC
CTGACCTGGGTGGAGGGCTTGACTGGGGAGGGTGGTGCCGTGCCGCCCGG
CGGCGTGGGCAGTGGAAGCCTGAACAAGTCGGGAGACACAGACTCGGCGC
CCAACACGGGTGACTCCAACCAAAGTGTATTTTCGAAAGTATTCTCAAGG
TGAAAGCTTTCTAGACCAT

BS07549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 3543 CG32464-PW 183..2216 16..2049 10170 100 Plus
mtd-RT 3321 CG32464-PT 183..2216 16..2049 10170 100 Plus
mtd-RS 3321 CG32464-PS 183..2216 16..2049 10170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 6314 CG32464-RW 1954..3987 16..2049 10170 100 Plus
mtd-RT 5170 CG32464-RT 1032..3065 16..2049 10170 100 Plus
mtd-RS 4651 CG32464-RS 513..2546 16..2049 10170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5294306..5294856 1876..1326 2755 100 Minus
3R 32079331 3R 5296147..5296637 1064..574 2455 100 Minus
3R 32079331 3R 5298202..5298489 575..288 1440 100 Minus
3R 32079331 3R 5294058..5294236 2053..1875 895 100 Minus
3R 32079331 3R 5334404..5334572 184..16 845 100 Minus
3R 32079331 3R 5295641..5295797 1326..1170 785 100 Minus
3R 32079331 3R 5295856..5295964 1172..1064 545 100 Minus
3R 32079331 3R 5299469..5299573 288..184 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:43:25 has no hits.

BS07549.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:05 Download gff for BS07549.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RD 319..2354 17..2052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:56 Download gff for BS07549.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RS 514..2549 17..2052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:45 Download gff for BS07549.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RS 514..2549 17..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:45 Download gff for BS07549.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5294059..5294234 1877..2052 100 <- Minus
3R 5294306..5294855 1327..1876 100 <- Minus
3R 5295641..5295795 1172..1326 100 <- Minus
3R 5295857..5295963 1065..1171 100 <- Minus
3R 5296147..5296635 576..1064 100 <- Minus
3R 5298202..5298489 288..575 100 <- Minus
3R 5299470..5299573 184..287 100 <- Minus
3R 5334405..5334571 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:56 Download gff for BS07549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1119781..1119956 1877..2052 100 <- Minus
arm_3R 1120028..1120577 1327..1876 100 <- Minus
arm_3R 1121363..1121517 1172..1326 100 <- Minus
arm_3R 1121579..1121685 1065..1171 100 <- Minus
arm_3R 1121869..1122357 576..1064 100 <- Minus
arm_3R 1123924..1124211 288..575 100 <- Minus
arm_3R 1125192..1125295 184..287 100 <- Minus
arm_3R 1160127..1160293 17..183 100   Minus

BS07549.pep Sequence

Translation from 16 to 2052

> BS07549.pep
MEHAGAPISTSASNIATVLEDGENQQLPPLTGSGPSRQRSLRDRLKDGIT
GSFSWQSKSRSVDHGLAAPFDLDSLRSKVEQRFESVDKLSRQKSSLPTIP
TISYTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSA
KDDASSSSTHDADGASLSGKSSPVERKLSGDESREKDILEGLRPGSPKPG
HIERVGGSSQQQQAEEEANKSDDPVITQRFLKINVRHITDGQGVVGGVLL
VTPNAVMFDPNVSDPLVIEHGPESYGVIAPMELVVNAAIFHDIAHMRVAG
GAGQGLNSASGDAEKPEIYYPKPVLVEEDSKELPEQQSLLGEDGNKRLDA
EIGSLEIADDQESLCSSTGRDGDAFPKAFDRERVEDSSMEAKDSAKTDAL
DDEDKKAGLGLSSTRSTLEERRKSLLDHHWAIPSKDRSSEDEGDNESNVT
VDSGARVQDPHSANSSVSGVPLSQPPVAAAAAAAAVAPASAVVPLPPSGI
DLEHLEQLSKQSCYDSGIDIREPVPNVQPIPKKTVYSDADIVLSSDWVPP
KTIVPTHFSESPPRSTILGQSLDAGTGGAGGVRKKTSSVSFSVDDEAAQQ
AQAQSAALAVTDKQADKKNKMLKRLSYPLTWVEGLTGEGGAVPPGGVGSG
SLNKSGDTDSAPNTGDSNQSVFSKVFSR*

BS07549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-PT 1106 CG32464-PT 62..739 1..678 3445 100 Plus
mtd-PS 1106 CG32464-PS 62..739 1..678 3445 100 Plus
mtd-PW 1180 CG32464-PW 62..738 1..677 3440 100 Plus
mtd-PZ 686 CG32464-PZ 1..686 1..678 3426 98.8 Plus
mtd-PX 1127 CG32464-PX 1..685 1..677 3421 98.8 Plus