Clone Sequence Records
BS07550.3prime Sequence
911 bp (862 high quality bases) assembled on 2006-01-06
> BS07550.3prime
ATGGTCTAGAAAGCTTCTAATCGTCCTTCAAGCCCAGGGCAAAGTCTTGG
GCTTCCCCGCCATTCCTGAAAATCCGCACATACGCGGACTTCGGGCCAAA
CTTCCAAATGGCGACGTAGGGCAAGTAATAGGTGAATATGTCCACCAGCC
AGACGCGGAAGTTCAAGTACCATCGCACCAGGGCATACCTGTGCAGATAT
GTGACGAGGAACAGGCCGTAGCTGACTATGAATCGGTCCCACCATCCCAT
GTCGTAGTAGTGCAGCTTCTGCTGGGGATCCTGCGCCACTCCGTTCTCAT
GATCGAAACTGTAGTACTCGTATCCCTTAACGCAGGCCAATCGCTTGGCA
AAGAATATGTTGGCATTCACCGACAGCATGGTGTTTATGTGCCACAAGCC
ATTAATCAGGGCCTCGGTCATTCGTTTGAAATCCTCCCCAGTGTTTGCCA
GAGCTGGTTCGTATACCTTACGCATCACAATGTCCAGGCGGAGCTTTGAC
TCCGCCCAGTTCCTACCGCAGATGTTGTACTCATCCTTGATGCCCAGCAG
ATAGCCGAGAACGCGCCACATATGCGTAGTGGCCTCCAGGAAGTCCTGAT
CTTTCAGCTTTATGCGATGTGCGCCCATCGTTATGAAGCCAATGAAACCG
AACTGCGTGAGCGCCAAATCCTTCTGGGTGATCTGTCCAGCTCCTTGGCG
GGCGCACGCATGACTGGAGCGGCTGTGGGCCCGCCTCACGGCCGCAATGC
TGGTCCAGAACCTGCTGCCACGGTCCGCGATGTTGTGGTTATACCAGGCT
TGCGTGTGGAATATAGTACGCACATAGCGACGGTAGGCGGTGAACGCTGT
CGAGGATTGGCGTGTGCACGACAGCACCCCGGAGAATGGATGGAATAGCC
AGCACGGGCAT
BS07550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-PA | 1212 | CG31344-RA | 350..1212 | 879..17 | 4315 | 100 | Minus |
CG31344-PA | 1212 | CG31344-RA | 323..352 | 907..878 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-RA | 1450 | CG31344-RA | 506..1396 | 907..16 | 4435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15223432..15224322 | 16..907 | 4410 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:48:19 has no hits.
BS07550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:12 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-PA | 319..1212 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:26 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-PA | 319..1212 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:33 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 502..1396 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:27 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 502..1396 | 16..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:27 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15223432..15224324 | 16..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:33 Download gff for
BS07550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11049154..11050046 | 16..911 | 99 | | Plus |
BS07550.5prime Sequence
913 bp (775 high quality bases) assembled on 2006-01-06
> BS07550.5prime
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTTTTGCCA
GCGATTGGCCTGC
BS07550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-PA | 1212 | CG31344-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-RA | 1450 | CG31344-RA | 180..1080 | 13..913 | 4460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15223748..15224388 | 913..273 | 3160 | 99.5 | Minus |
3R | 32079331 | 3R | 15224742..15224934 | 273..81 | 965 | 100 | Minus |
3R | 32079331 | 3R | 15225082..15225150 | 81..13 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:20:57 has no hits.
BS07550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:13 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:27 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:51 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 174..1080 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:32 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 174..1080 | 5..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:32 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15223748..15224387 | 274..913 | 99 | <- | Minus |
3R | 15224742..15224934 | 81..273 | 100 | <- | Minus |
3R | 15225083..15225156 | 5..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:51 Download gff for
BS07550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11049470..11050109 | 274..913 | 99 | <- | Minus |
arm_3R | 11050464..11050656 | 81..273 | 100 | <- | Minus |
arm_3R | 11050805..11050878 | 5..80 | 94 | | Minus |
BS07550.complete Sequence
1244 bp (1244 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635904
> BS07550.complete
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTTTGCCAA
GCGATTGGCCTGCGTTAAGGGATACGAGTACTACAGTTTCGATCATGAGA
ACGGAGTGGCGCAGGATCCCCAGCAGAAGCTGCACTACTACGACATGGGA
TGGTGGGACCGATTCATAGTCAGCTACGGCCTGTTCCTCGTCACATATCT
GCACAGGTATGCCCTGGTGCGATGGTACTTGAACTTCCGCGTCTGGCTGG
TGGACATATTCACCTATTACTTGCCCTACGTCGCCATTTGGAAGTTTGGC
CCGAAGTCCGCGTATGTGCGGATTTTCAGGAATGGCGGGGAAGCCCAAGA
CTTTGCCCTGGGCTTGAAGGACGATTAGAAGCTTTCTAGACCAT
BS07550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-RA | 1212 | CG31344-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-RA | 1450 | CG31344-RA | 180..1396 | 13..1229 | 6085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15223432..15224388 | 1229..273 | 4785 | 100 | Minus |
3R | 32079331 | 3R | 15224742..15224934 | 273..81 | 965 | 100 | Minus |
3R | 32079331 | 3R | 15225082..15225150 | 81..13 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:55 has no hits.
BS07550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:20 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 1..1212 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:19 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 267..1489 | 5..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:06 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 184..1395 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:22 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 267..1489 | 5..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:06 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31344-RA | 184..1395 | 17..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:06 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15223433..15224387 | 274..1228 | 100 | <- | Minus |
3R | 15224742..15224934 | 81..273 | 100 | <- | Minus |
3R | 15225083..15225146 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:06 Download gff for
BS07550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11049155..11050109 | 274..1228 | 100 | <- | Minus |
arm_3R | 11050464..11050656 | 81..273 | 100 | <- | Minus |
arm_3R | 11050805..11050868 | 17..80 | 100 | | Minus |
BS07550.pep Sequence
Translation from 16 to 1227
> BS07550.pep
MQVDGCTSSSSEIPHPAKRETWISGKMQSSSHSKDGHNAAGASKLLQDHQ
EPEDYLEHLMKEGSQEGDSGADLELPSWYDEQLFRRGQSYFSTYRFVMNA
GMLAGLIAVLAIPSILRVLSCTRQSSTAFTAYRRYVRTIFHTQAWYNHNI
ADRGSRFWTSIAAVRRAHSRSSHACARQGAGQITQKDLALTQFGFIGFIT
MGAHRIKLKDQDFLEATTHMWRVLGYLLGIKDEYNICGRNWAESKLRLDI
VMRKVYEPALANTGEDFKRMTEALINGLWHINTMLSVNANIFFAKRLACV
KGYEYYSFDHENGVAQDPQQKLHYYDMGWWDRFIVSYGLFLVTYLHRYAL
VRWYLNFRVWLVDIFTYYLPYVAIWKFGPKSAYVRIFRNGGEAQDFALGL
KDD*
BS07550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31344-PA | 403 | CG31344-PA | 1..403 | 1..403 | 2161 | 100 | Plus |