Clone BS07550 Report

Search the DGRC for BS07550

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG31344-RA
Protein status:BS07550.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07550.3prime Sequence

911 bp (862 high quality bases) assembled on 2006-01-06

> BS07550.3prime
ATGGTCTAGAAAGCTTCTAATCGTCCTTCAAGCCCAGGGCAAAGTCTTGG
GCTTCCCCGCCATTCCTGAAAATCCGCACATACGCGGACTTCGGGCCAAA
CTTCCAAATGGCGACGTAGGGCAAGTAATAGGTGAATATGTCCACCAGCC
AGACGCGGAAGTTCAAGTACCATCGCACCAGGGCATACCTGTGCAGATAT
GTGACGAGGAACAGGCCGTAGCTGACTATGAATCGGTCCCACCATCCCAT
GTCGTAGTAGTGCAGCTTCTGCTGGGGATCCTGCGCCACTCCGTTCTCAT
GATCGAAACTGTAGTACTCGTATCCCTTAACGCAGGCCAATCGCTTGGCA
AAGAATATGTTGGCATTCACCGACAGCATGGTGTTTATGTGCCACAAGCC
ATTAATCAGGGCCTCGGTCATTCGTTTGAAATCCTCCCCAGTGTTTGCCA
GAGCTGGTTCGTATACCTTACGCATCACAATGTCCAGGCGGAGCTTTGAC
TCCGCCCAGTTCCTACCGCAGATGTTGTACTCATCCTTGATGCCCAGCAG
ATAGCCGAGAACGCGCCACATATGCGTAGTGGCCTCCAGGAAGTCCTGAT
CTTTCAGCTTTATGCGATGTGCGCCCATCGTTATGAAGCCAATGAAACCG
AACTGCGTGAGCGCCAAATCCTTCTGGGTGATCTGTCCAGCTCCTTGGCG
GGCGCACGCATGACTGGAGCGGCTGTGGGCCCGCCTCACGGCCGCAATGC
TGGTCCAGAACCTGCTGCCACGGTCCGCGATGTTGTGGTTATACCAGGCT
TGCGTGTGGAATATAGTACGCACATAGCGACGGTAGGCGGTGAACGCTGT
CGAGGATTGGCGTGTGCACGACAGCACCCCGGAGAATGGATGGAATAGCC
AGCACGGGCAT

BS07550.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 1212 CG31344-RA 350..1212 879..17 4315 100 Minus
CG31344-PA 1212 CG31344-RA 323..352 907..878 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 506..1396 907..16 4435 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223432..15224322 16..907 4410 99.9 Plus
Blast to na_te.dros performed on 2015-02-06 11:48:19 has no hits.

BS07550.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:12 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 319..1212 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:26 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 319..1212 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:33 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 502..1396 16..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:27 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 502..1396 16..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:27 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15223432..15224324 16..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:33 Download gff for BS07550.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049154..11050046 16..911 99   Plus

BS07550.5prime Sequence

913 bp (775 high quality bases) assembled on 2006-01-06

> BS07550.5prime
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTTTTGCCA
GCGATTGGCCTGC

BS07550.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 1212 CG31344-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 180..1080 13..913 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223748..15224388 913..273 3160 99.5 Minus
3R 32079331 3R 15224742..15224934 273..81 965 100 Minus
3R 32079331 3R 15225082..15225150 81..13 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:20:57 has no hits.

BS07550.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:13 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:27 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:51 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 174..1080 5..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:32 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 174..1080 5..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:32 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15223748..15224387 274..913 99 <- Minus
3R 15224742..15224934 81..273 100 <- Minus
3R 15225083..15225156 5..80 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:51 Download gff for BS07550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049470..11050109 274..913 99 <- Minus
arm_3R 11050464..11050656 81..273 100 <- Minus
arm_3R 11050805..11050878 5..80 94   Minus

BS07550.complete Sequence

1244 bp (1244 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635904

> BS07550.complete
GAAGTTATCAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCG
AGATCCCCCATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAG
TCGTCATCGCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACT
GCTTCAGGATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGG
AGGGCAGTCAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGG
TACGATGAGCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCG
CTTTGTAATGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTA
TTCCATCCATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCG
TTCACCGCCTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTG
GTATAACCACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTG
CGGCCGTGAGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAA
GGAGCTGGACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTT
CATTGGCTTCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGG
ACTTCCTGGAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTG
GGCATCAAGGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAA
GCTCCGCCTGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAA
ACACTGGGGAGGATTTCAAACGAATGACCGAGGCCCTGATTAATGGCTTG
TGGCACATAAACACCATGCTGTCGGTGAATGCCAACATATTCTTTGCCAA
GCGATTGGCCTGCGTTAAGGGATACGAGTACTACAGTTTCGATCATGAGA
ACGGAGTGGCGCAGGATCCCCAGCAGAAGCTGCACTACTACGACATGGGA
TGGTGGGACCGATTCATAGTCAGCTACGGCCTGTTCCTCGTCACATATCT
GCACAGGTATGCCCTGGTGCGATGGTACTTGAACTTCCGCGTCTGGCTGG
TGGACATATTCACCTATTACTTGCCCTACGTCGCCATTTGGAAGTTTGGC
CCGAAGTCCGCGTATGTGCGGATTTTCAGGAATGGCGGGGAAGCCCAAGA
CTTTGCCCTGGGCTTGAAGGACGATTAGAAGCTTTCTAGACCAT

BS07550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1212 CG31344-PA 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-RA 1450 CG31344-RA 180..1396 13..1229 6085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15223432..15224388 1229..273 4785 100 Minus
3R 32079331 3R 15224742..15224934 273..81 965 100 Minus
3R 32079331 3R 15225082..15225150 81..13 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:35:55 has no hits.

BS07550.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:20 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 1..1212 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:19 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 267..1489 5..1229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:06 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 184..1395 17..1228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:22 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 267..1489 5..1229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:06 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
CG31344-RA 184..1395 17..1228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:06 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15223433..15224387 274..1228 100 <- Minus
3R 15224742..15224934 81..273 100 <- Minus
3R 15225083..15225146 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:06 Download gff for BS07550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11049155..11050109 274..1228 100 <- Minus
arm_3R 11050464..11050656 81..273 100 <- Minus
arm_3R 11050805..11050868 17..80 100   Minus

BS07550.pep Sequence

Translation from 16 to 1227

> BS07550.pep
MQVDGCTSSSSEIPHPAKRETWISGKMQSSSHSKDGHNAAGASKLLQDHQ
EPEDYLEHLMKEGSQEGDSGADLELPSWYDEQLFRRGQSYFSTYRFVMNA
GMLAGLIAVLAIPSILRVLSCTRQSSTAFTAYRRYVRTIFHTQAWYNHNI
ADRGSRFWTSIAAVRRAHSRSSHACARQGAGQITQKDLALTQFGFIGFIT
MGAHRIKLKDQDFLEATTHMWRVLGYLLGIKDEYNICGRNWAESKLRLDI
VMRKVYEPALANTGEDFKRMTEALINGLWHINTMLSVNANIFFAKRLACV
KGYEYYSFDHENGVAQDPQQKLHYYDMGWWDRFIVSYGLFLVTYLHRYAL
VRWYLNFRVWLVDIFTYYLPYVAIWKFGPKSAYVRIFRNGGEAQDFALGL
KDD*

BS07550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31344-PA 403 CG31344-PA 1..403 1..403 2161 100 Plus