Clone Sequence Records
BS07561.3prime Sequence
878 bp (807 high quality bases) assembled on 2006-01-06
> BS07561.3prime
ATGGTCTAGAAAGCTTTCACTTTGTGTCTGCCTGCATAATGCGCCTGTAC
TGTCGTTGGTTCTCCAGCAGCTGCAGGAACACCTTGTACTTGCGATTGTG
GAACTCAAGCGTTTCCGCGTTCGGCTTCACCAGCTGGCCAGTGCCACCCA
TGGATTTCGAGGCGCTCTCCAAGCTGTCGAAGTGGCCGGAGGCAGCGGCT
CCCAAGGCAGCAGCGCCCACCAGAACCATTTCCTGTTCATCCGGAATCAG
TGCGGGCAGATTGCAAATGTCCGCATGACATTGTACGTACAGAGGATTCT
TGGCCAATCCCCCGCAGAAAAGTAGCGTTTGAAAGGGAGCTCTACCGTAC
TGGTAAAGGTTTTCAATAATGTGACGTGTGCCGTAAGCCAGAGCTTGGAC
GAACGCCAAGTATTTGATGGCCAGAGATTCAGTTCCTCGCGTCATGTCCA
GTCCAGTAATCACTCCTCGCAGCGTGGGATCTGCGATGGGCGACCGATTG
CCATGCAAGTCCGGCCAGACATGGACATCCTGGGTGAGACAGCCCACCTG
GCTTAATCCTCGAGCTGCTGCCAGTTCCGGCAGCAACTTATTAAGATGCT
GGTAGATAAACTTATCCTCTCCCAATTGGGATTTCAGTTCGGCGTAGGAT
TCATGCGACTTGAGGACGTGATCTAGGAGATGTCCTGCGATGCTCTGACC
ACCCTCGTTTAGGAAGTAGCCGGGAATAATGGCATCCTGATAGGGACCCC
AAACACCTTGTGCGAAGCATGCCTTCCGGGTGATGCTCATGTGGCAGGTG
GATGTACCGGCAATCAGAGCCATTTTACCCTGGACATCGTCGGCACCCTT
GGACTCCTTTGAGCGGCATCCAAACATT
BS07561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-PB | 1320 | CG11594-RB | 459..1320 | 878..17 | 4310 | 100 | Minus |
CG11594-PA | 1647 | CG11594-RA | 786..1647 | 878..17 | 4310 | 100 | Minus |
CG11594-PC | 1647 | CG11594-RC | 786..1647 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-RE | 2123 | CG11594-RE | 1169..2030 | 878..17 | 4310 | 100 | Minus |
CG11594-RD | 1879 | CG11594-RD | 925..1786 | 878..17 | 4310 | 100 | Minus |
CG11594-RC | 1944 | CG11594-RC | 990..1851 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4023690..4024107 | 461..878 | 2090 | 100 | Plus |
3L | 28110227 | 3L | 4023276..4023494 | 167..385 | 1095 | 100 | Plus |
3L | 28110227 | 3L | 4023067..4023218 | 17..168 | 760 | 100 | Plus |
3L | 28110227 | 3L | 4023553..4023628 | 386..461 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:07:55 has no hits.
BS07561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:28 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-PB | 459..1320 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:50 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-PC | 786..1647 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:41 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 990..1854 | 10..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:51 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 990..1854 | 10..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:51 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4023553..4023627 | 386..460 | 100 | <- | Plus |
3L | 4023060..4023216 | 10..166 | 97 | <- | Plus |
3L | 4023276..4023494 | 167..385 | 100 | <- | Plus |
3L | 4023690..4024107 | 461..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:41 Download gff for
BS07561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4023276..4023494 | 167..385 | 100 | <- | Plus |
arm_3L | 4023553..4023627 | 386..460 | 100 | <- | Plus |
arm_3L | 4023060..4023216 | 10..166 | 97 | <- | Plus |
arm_3L | 4023690..4024107 | 461..878 | 100 | | Plus |
BS07561.5prime Sequence
393 bp (364 high quality bases) assembled on 2006-01-06
> BS07561.5prime
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGC
BS07561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-PB | 1320 | CG11594-RB | 1..377 | 17..393 | 1860 | 99.7 | Plus |
CG11594-PA | 1647 | CG11594-RA | 328..704 | 17..393 | 1860 | 99.7 | Plus |
CG11594-PC | 1647 | CG11594-RC | 328..704 | 17..393 | 1860 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-RE | 2123 | CG11594-RE | 711..1087 | 17..393 | 1870 | 99.7 | Plus |
CG11594-RD | 1879 | CG11594-RD | 467..843 | 17..393 | 1870 | 99.7 | Plus |
CG11594-RC | 1944 | CG11594-RC | 532..908 | 17..393 | 1870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4024189..4024565 | 393..17 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:39:13 has no hits.
BS07561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:29 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-PB | 1..377 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:51 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-PC | 328..704 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:42 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 532..908 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:42 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 532..908 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:42 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4024189..4024565 | 17..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:42 Download gff for
BS07561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4024189..4024565 | 17..393 | 99 | | Minus |
BS07561.complete Sequence
1352 bp assembled on 2009-08-24
GenBank Submission: KX803644
> BS07561.complete
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAGGCT
GCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAAT
CGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGT
CCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACA
TCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTTCGCACAAGGTGT
TTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACTTCCTAAACGAGG
GTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTCCTCAAGTCGCAT
GAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGATAAGTTTATCTA
CCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAGCTCGAGGATTAA
GCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGGCCGGACTTGCAT
GGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGGAGTGATTACTGG
ACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCAAATACTTGGCGT
TCGTCCAAGCTCTGGCTTACGGCACACGTCACATTATTGAAAACCTTTAC
CAGTACGGTAGAGCTCCCTTTCAAACGCTACTTTTCTGCGGGGGATTGGC
CAAGAATCCTCTGTACGTACAATGTCATGCGGACATTTGCAATCTGCCCG
CACTGATTCCGGATGAACAGGAAATGGTTCTGGTGGGCGCTGCTGCCTTG
GGAGCCGCTGCCTCCGGCCACTTCGACAGCTTGGAGAGCGCCTCGAAATC
CATGGGTGGCACTGGCCAGCTGGTGAAGCCGAACGCGGAAACGCTTGAGT
TCCACAATCGCAAGTACAAGGTGTTCCTGCAGCTGCTGGAGAACCAACGA
CAGTACAGGCGCATTATGCAGGCAGACACAAAGTGAAAGCTTTCTAGACC
AT
BS07561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-RE | 1647 | CG11594-PE | 328..1647 | 17..1336 | 6585 | 99.9 | Plus |
CG11594-RD | 1647 | CG11594-PD | 328..1647 | 17..1336 | 6585 | 99.9 | Plus |
CG11594-RC | 1647 | CG11594-PC | 328..1647 | 17..1336 | 6585 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-RE | 2123 | CG11594-RE | 711..2030 | 17..1336 | 6585 | 99.9 | Plus |
CG11594-RD | 1879 | CG11594-RD | 467..1786 | 17..1336 | 6585 | 99.9 | Plus |
CG11594-RC | 1944 | CG11594-RC | 532..1851 | 17..1336 | 6585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4023690..4024565 | 892..17 | 4365 | 99.9 | Minus |
3L | 28110227 | 3L | 4023276..4023494 | 1186..968 | 1095 | 100 | Minus |
3L | 28110227 | 3L | 4023067..4023218 | 1336..1185 | 760 | 100 | Minus |
3L | 28110227 | 3L | 4023553..4023628 | 967..892 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:27:53 has no hits.
BS07561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:37 Download gff for
BS07561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 530..1848 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:21 Download gff for
BS07561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 532..1850 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:08 Download gff for
BS07561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11594-RC | 532..1850 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:08 Download gff for
BS07561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4023276..4023494 | 968..1186 | 100 | <- | Minus |
3L | 4023553..4023627 | 893..967 | 100 | <- | Minus |
3L | 4023068..4023216 | 1187..1335 | 100 | <- | Minus |
3L | 4023690..4024565 | 17..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:21 Download gff for
BS07561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4023068..4023216 | 1187..1335 | 100 | <- | Minus |
arm_3L | 4023276..4023494 | 968..1186 | 100 | <- | Minus |
arm_3L | 4023553..4023627 | 893..967 | 100 | <- | Minus |
arm_3L | 4023690..4024565 | 17..892 | 99 | | Minus |
BS07561.pep Sequence
Translation from 16 to 1335
> BS07561.pep
MDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKRNLSQTFGNI
WRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKEFLKQADLEE
LTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVSTSLIDAHAG
ALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACFAQGVWGPYQ
DAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGEDKFIYQHLNK
LLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRGVITGLDMTR
GTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFCGGLAKNPLY
VQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLESASKSMGGTG
QLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*
BS07561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11594-PE | 548 | CG11594-PE | 110..548 | 1..439 | 2304 | 100 | Plus |
CG11594-PD | 548 | CG11594-PD | 110..548 | 1..439 | 2304 | 100 | Plus |
CG11594-PC | 548 | CG11594-PC | 110..548 | 1..439 | 2304 | 100 | Plus |
CG11594-PA | 548 | CG11594-PA | 110..548 | 1..439 | 2304 | 100 | Plus |