Clone BS07561 Report

Search the DGRC for BS07561

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG11594-RB
Protein status:BS07561.pep: full length peptide match
Sequenced Size:1352

Clone Sequence Records

BS07561.3prime Sequence

878 bp (807 high quality bases) assembled on 2006-01-06

> BS07561.3prime
ATGGTCTAGAAAGCTTTCACTTTGTGTCTGCCTGCATAATGCGCCTGTAC
TGTCGTTGGTTCTCCAGCAGCTGCAGGAACACCTTGTACTTGCGATTGTG
GAACTCAAGCGTTTCCGCGTTCGGCTTCACCAGCTGGCCAGTGCCACCCA
TGGATTTCGAGGCGCTCTCCAAGCTGTCGAAGTGGCCGGAGGCAGCGGCT
CCCAAGGCAGCAGCGCCCACCAGAACCATTTCCTGTTCATCCGGAATCAG
TGCGGGCAGATTGCAAATGTCCGCATGACATTGTACGTACAGAGGATTCT
TGGCCAATCCCCCGCAGAAAAGTAGCGTTTGAAAGGGAGCTCTACCGTAC
TGGTAAAGGTTTTCAATAATGTGACGTGTGCCGTAAGCCAGAGCTTGGAC
GAACGCCAAGTATTTGATGGCCAGAGATTCAGTTCCTCGCGTCATGTCCA
GTCCAGTAATCACTCCTCGCAGCGTGGGATCTGCGATGGGCGACCGATTG
CCATGCAAGTCCGGCCAGACATGGACATCCTGGGTGAGACAGCCCACCTG
GCTTAATCCTCGAGCTGCTGCCAGTTCCGGCAGCAACTTATTAAGATGCT
GGTAGATAAACTTATCCTCTCCCAATTGGGATTTCAGTTCGGCGTAGGAT
TCATGCGACTTGAGGACGTGATCTAGGAGATGTCCTGCGATGCTCTGACC
ACCCTCGTTTAGGAAGTAGCCGGGAATAATGGCATCCTGATAGGGACCCC
AAACACCTTGTGCGAAGCATGCCTTCCGGGTGATGCTCATGTGGCAGGTG
GATGTACCGGCAATCAGAGCCATTTTACCCTGGACATCGTCGGCACCCTT
GGACTCCTTTGAGCGGCATCCAAACATT

BS07561.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-PB 1320 CG11594-RB 459..1320 878..17 4310 100 Minus
CG11594-PA 1647 CG11594-RA 786..1647 878..17 4310 100 Minus
CG11594-PC 1647 CG11594-RC 786..1647 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-RE 2123 CG11594-RE 1169..2030 878..17 4310 100 Minus
CG11594-RD 1879 CG11594-RD 925..1786 878..17 4310 100 Minus
CG11594-RC 1944 CG11594-RC 990..1851 878..17 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4023690..4024107 461..878 2090 100 Plus
3L 28110227 3L 4023276..4023494 167..385 1095 100 Plus
3L 28110227 3L 4023067..4023218 17..168 760 100 Plus
3L 28110227 3L 4023553..4023628 386..461 380 100 Plus
Blast to na_te.dros performed on 2015-02-08 15:07:55 has no hits.

BS07561.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:28 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-PB 459..1320 17..878 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:50 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-PC 786..1647 17..878 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:02:41 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 990..1854 10..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:41:51 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 990..1854 10..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:41:51 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4023553..4023627 386..460 100 <- Plus
3L 4023060..4023216 10..166 97 <- Plus
3L 4023276..4023494 167..385 100 <- Plus
3L 4023690..4024107 461..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:02:41 Download gff for BS07561.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4023276..4023494 167..385 100 <- Plus
arm_3L 4023553..4023627 386..460 100 <- Plus
arm_3L 4023060..4023216 10..166 97 <- Plus
arm_3L 4023690..4024107 461..878 100   Plus

BS07561.5prime Sequence

393 bp (364 high quality bases) assembled on 2006-01-06

> BS07561.5prime
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGC

BS07561.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-PB 1320 CG11594-RB 1..377 17..393 1860 99.7 Plus
CG11594-PA 1647 CG11594-RA 328..704 17..393 1860 99.7 Plus
CG11594-PC 1647 CG11594-RC 328..704 17..393 1860 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-RE 2123 CG11594-RE 711..1087 17..393 1870 99.7 Plus
CG11594-RD 1879 CG11594-RD 467..843 17..393 1870 99.7 Plus
CG11594-RC 1944 CG11594-RC 532..908 17..393 1870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4024189..4024565 393..17 1870 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 22:39:13 has no hits.

BS07561.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:29 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-PB 1..377 17..393 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:51 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-PC 328..704 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:42 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 532..908 17..393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:42 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 532..908 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:42 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4024189..4024565 17..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:42 Download gff for BS07561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4024189..4024565 17..393 99   Minus

BS07561.complete Sequence

1352 bp assembled on 2009-08-24

GenBank Submission: KX803644

> BS07561.complete
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAGGCT
GCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAAT
CGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGT
CCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACA
TCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTTCGCACAAGGTGT
TTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACTTCCTAAACGAGG
GTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTCCTCAAGTCGCAT
GAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGATAAGTTTATCTA
CCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAGCTCGAGGATTAA
GCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGGCCGGACTTGCAT
GGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGGAGTGATTACTGG
ACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCAAATACTTGGCGT
TCGTCCAAGCTCTGGCTTACGGCACACGTCACATTATTGAAAACCTTTAC
CAGTACGGTAGAGCTCCCTTTCAAACGCTACTTTTCTGCGGGGGATTGGC
CAAGAATCCTCTGTACGTACAATGTCATGCGGACATTTGCAATCTGCCCG
CACTGATTCCGGATGAACAGGAAATGGTTCTGGTGGGCGCTGCTGCCTTG
GGAGCCGCTGCCTCCGGCCACTTCGACAGCTTGGAGAGCGCCTCGAAATC
CATGGGTGGCACTGGCCAGCTGGTGAAGCCGAACGCGGAAACGCTTGAGT
TCCACAATCGCAAGTACAAGGTGTTCCTGCAGCTGCTGGAGAACCAACGA
CAGTACAGGCGCATTATGCAGGCAGACACAAAGTGAAAGCTTTCTAGACC
AT

BS07561.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-RE 1647 CG11594-PE 328..1647 17..1336 6585 99.9 Plus
CG11594-RD 1647 CG11594-PD 328..1647 17..1336 6585 99.9 Plus
CG11594-RC 1647 CG11594-PC 328..1647 17..1336 6585 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-RE 2123 CG11594-RE 711..2030 17..1336 6585 99.9 Plus
CG11594-RD 1879 CG11594-RD 467..1786 17..1336 6585 99.9 Plus
CG11594-RC 1944 CG11594-RC 532..1851 17..1336 6585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4023690..4024565 892..17 4365 99.9 Minus
3L 28110227 3L 4023276..4023494 1186..968 1095 100 Minus
3L 28110227 3L 4023067..4023218 1336..1185 760 100 Minus
3L 28110227 3L 4023553..4023628 967..892 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:27:53 has no hits.

BS07561.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:37 Download gff for BS07561.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 530..1848 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:21 Download gff for BS07561.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 532..1850 17..1335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:08 Download gff for BS07561.complete
Subject Subject Range Query Range Percent Splice Strand
CG11594-RC 532..1850 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:08 Download gff for BS07561.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4023276..4023494 968..1186 100 <- Minus
3L 4023553..4023627 893..967 100 <- Minus
3L 4023068..4023216 1187..1335 100 <- Minus
3L 4023690..4024565 17..892 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:21 Download gff for BS07561.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4023068..4023216 1187..1335 100 <- Minus
arm_3L 4023276..4023494 968..1186 100 <- Minus
arm_3L 4023553..4023627 893..967 100 <- Minus
arm_3L 4023690..4024565 17..892 99   Minus

BS07561.pep Sequence

Translation from 16 to 1335

> BS07561.pep
MDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKRNLSQTFGNI
WRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKEFLKQADLEE
LTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVSTSLIDAHAG
ALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACFAQGVWGPYQ
DAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGEDKFIYQHLNK
LLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRGVITGLDMTR
GTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFCGGLAKNPLY
VQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLESASKSMGGTG
QLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTK*

BS07561.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11594-PE 548 CG11594-PE 110..548 1..439 2304 100 Plus
CG11594-PD 548 CG11594-PD 110..548 1..439 2304 100 Plus
CG11594-PC 548 CG11594-PC 110..548 1..439 2304 100 Plus
CG11594-PA 548 CG11594-PA 110..548 1..439 2304 100 Plus