Clone BS07562 Report

Search the DGRC for BS07562

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG7549-RB
Protein status:BS07562.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS07562.3prime Sequence

933 bp (828 high quality bases) assembled on 2006-01-06

> BS07562.3prime
ATGGTCTAGAAAGCTTCTAGTTGGATAGCTGCTGCTCTGCCTCCGCGGGC
ACCACGTGCTCATGGTCCTCCTTGGGCATGCTGCGCTGCTCCTCCACCCT
CAGCTCCGCCTTCTTGGCTTGCTCCTGGCGCCGGGCCACGCCCTCCATCG
ACTCTCTCAGCGAATCGATGTCCAGCGCATTCTCGTCTTTGTCTCCACCC
TGCTCGTGCCTCTGACCGCCAGCGTACTTGGAGAAATAGGTGAGCGACTT
CATCAGCTGATAGCTCTTTGAGATGGGAATGTTGGAGTCGTAGACGCTCG
TGCTAGAGCTGCAGTCGACGTAGAACCACCAGTTGCACTTTAAGATCGTC
TGGTCGAAGAGTGTGTTCTCCGGGCAAAGGAACGACTTCCGCACCATGCC
GTCATCGGTTAGGGCGCATACGTGGAATACCATGCAGCCAAGGTCGGTGT
CAGCGTAGAGACCGGGGAAGTGCTTTTGCTTAGCGCAGGAGAAGCTTGTA
GGTGGCAGGTCCACCTTGGATTTGAAGTTGTCGTCAAAGTTCTTATCGTA
GCCCACTGGATAGTACTCTTTAGGGGCATTCATTACCTTGGACACCTTGT
GCTCCGCCAGCGACTTTTGTGGGCGCGGTGTAGTGGTTGTCGTTGTGGTC
GTCGTGGTCGTAGTCCTCACAGTGGAGGTGCGCATAAACTCTTCCCTTAG
CTTGGCCGCCAGTTGGGCCCGGTGTTCGGCCTTTAGCTGCTGCTCCCGGA
CGTAAATGGCGTGCTTGATAGTGTCCACTGTTACGTTAGCAGCGGCGGCC
AGCTCTTCAACGGTAACATCCTTTAGGTCGAACTTGGGCTCCTCGAACTG
AAAGTAATTCGGGTGACTGGACACCGTTCGGTGCTCCTTACCGACATTGG
CGATCCTGGCGATGGATTGGGGCATGTCGACTG

BS07562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7549-PC 1692 CG7549-RC 784..1692 925..17 4520 99.8 Minus
CG7549-PA 1563 CG7549-RA 655..1563 925..17 4520 99.8 Minus
CG7549-PB 909 CG7549-RB 1..909 925..17 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1745 925..17 4530 99.9 Minus
mtg-RE 2399 CG7549-RE 960..1868 925..17 4530 99.9 Minus
mtg-RH 2233 CG7549-RH 794..1702 925..17 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260187 431..17 2075 100 Minus
3R 32079331 3R 8259119..8259459 925..585 1690 99.7 Minus
3R 32079331 3R 8259545..8259705 588..428 805 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:51:52 has no hits.

BS07562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:31 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:52 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..909 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:34 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 953..1880 3..933 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:20 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 788..1715 3..933 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:20 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8259113..8259457 587..933 98 -> Minus
3R 8259547..8259702 431..586 100 -> Minus
3R 8259774..8260200 3..430 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:34 Download gff for BS07562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084835..4085179 587..933 98 -> Minus
arm_3R 4085269..4085424 431..586 100 -> Minus
arm_3R 4085496..4085922 3..430 98   Minus

BS07562.5prime Sequence

923 bp (828 high quality bases) assembled on 2006-01-06

> BS07562.5prime
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACT

BS07562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7549-PC 1692 CG7549-RC 784..1690 17..923 4535 100 Plus
CG7549-PA 1563 CG7549-RA 655..1561 17..923 4535 100 Plus
CG7549-PB 909 CG7549-RB 1..907 17..923 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1743 17..923 4535 100 Plus
mtg-RE 2399 CG7549-RE 960..1866 17..923 4535 100 Plus
mtg-RH 2233 CG7549-RH 794..1700 17..923 4535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260185 511..923 2065 100 Plus
3R 32079331 3R 8259119..8259459 17..357 1705 100 Plus
3R 32079331 3R 8259545..8259705 354..514 805 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:49:08 has no hits.

BS07562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:32 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:54 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7549-PB 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:20:47 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 955..1865 10..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:42 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 790..1700 10..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:42 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8259115..8259457 10..355 99 -> Plus
3R 8259547..8259702 356..511 100 -> Plus
3R 8259774..8260185 512..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:20:47 Download gff for BS07562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084837..4085179 10..355 99 -> Plus
arm_3R 4085269..4085424 356..511 100 -> Plus
arm_3R 4085496..4085907 512..923 100   Plus

BS07562.complete Sequence

941 bp (941 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635905

> BS07562.complete
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACTAGAAGCTTTCTAGACCAT

BS07562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 1548 CG7549-PF 640..1548 17..925 4545 100 Plus
mtg-RE 1671 CG7549-PE 763..1671 17..925 4545 100 Plus
mtg-RH 1164 CG7549-PH 256..1164 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-RF 2276 CG7549-RF 837..1745 17..925 4545 100 Plus
mtg-RE 2399 CG7549-RE 960..1868 17..925 4545 100 Plus
mtg-RH 2233 CG7549-RH 794..1702 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8259773..8260187 511..925 2075 100 Plus
3R 32079331 3R 8259119..8259459 17..357 1705 100 Plus
3R 32079331 3R 8259545..8259705 354..514 805 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:46 has no hits.

BS07562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:52 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:44 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 25..950 10..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:40 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RE 959..1867 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:52 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
CG7549-RB 25..950 10..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:04 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
mtg-RH 794..1702 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:04 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8259119..8259457 17..355 100 -> Plus
3R 8259547..8259702 356..511 100 -> Plus
3R 8259774..8260187 512..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:40 Download gff for BS07562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4084841..4085179 17..355 100 -> Plus
arm_3R 4085269..4085424 356..511 100 -> Plus
arm_3R 4085496..4085909 512..925 100   Plus

BS07562.pep Sequence

Translation from 16 to 924

> BS07562.pep
MPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEELAAAANVTV
DTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTTTTTTTTTTP
RPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLPPTSFSCAKQ
KHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFDQTILKCNWW
FYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHEQGGDKDENA
LDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHVVPAEAEQQL
SN*

BS07562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
mtg-PH 387 CG7549-PH 86..387 1..302 1583 100 Plus
mtg-PG 387 CG7549-PG 86..387 1..302 1583 100 Plus
mtg-PF 515 CG7549-PF 214..515 1..302 1583 100 Plus
mtg-PE 556 CG7549-PE 255..556 1..302 1583 100 Plus
CG32036-PC 173 CG32036-PC 26..160 110..235 178 29.6 Plus