Clone Sequence Records
BS07562.3prime Sequence
933 bp (828 high quality bases) assembled on 2006-01-06
> BS07562.3prime
ATGGTCTAGAAAGCTTCTAGTTGGATAGCTGCTGCTCTGCCTCCGCGGGC
ACCACGTGCTCATGGTCCTCCTTGGGCATGCTGCGCTGCTCCTCCACCCT
CAGCTCCGCCTTCTTGGCTTGCTCCTGGCGCCGGGCCACGCCCTCCATCG
ACTCTCTCAGCGAATCGATGTCCAGCGCATTCTCGTCTTTGTCTCCACCC
TGCTCGTGCCTCTGACCGCCAGCGTACTTGGAGAAATAGGTGAGCGACTT
CATCAGCTGATAGCTCTTTGAGATGGGAATGTTGGAGTCGTAGACGCTCG
TGCTAGAGCTGCAGTCGACGTAGAACCACCAGTTGCACTTTAAGATCGTC
TGGTCGAAGAGTGTGTTCTCCGGGCAAAGGAACGACTTCCGCACCATGCC
GTCATCGGTTAGGGCGCATACGTGGAATACCATGCAGCCAAGGTCGGTGT
CAGCGTAGAGACCGGGGAAGTGCTTTTGCTTAGCGCAGGAGAAGCTTGTA
GGTGGCAGGTCCACCTTGGATTTGAAGTTGTCGTCAAAGTTCTTATCGTA
GCCCACTGGATAGTACTCTTTAGGGGCATTCATTACCTTGGACACCTTGT
GCTCCGCCAGCGACTTTTGTGGGCGCGGTGTAGTGGTTGTCGTTGTGGTC
GTCGTGGTCGTAGTCCTCACAGTGGAGGTGCGCATAAACTCTTCCCTTAG
CTTGGCCGCCAGTTGGGCCCGGTGTTCGGCCTTTAGCTGCTGCTCCCGGA
CGTAAATGGCGTGCTTGATAGTGTCCACTGTTACGTTAGCAGCGGCGGCC
AGCTCTTCAACGGTAACATCCTTTAGGTCGAACTTGGGCTCCTCGAACTG
AAAGTAATTCGGGTGACTGGACACCGTTCGGTGCTCCTTACCGACATTGG
CGATCCTGGCGATGGATTGGGGCATGTCGACTG
BS07562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7549-PC | 1692 | CG7549-RC | 784..1692 | 925..17 | 4520 | 99.8 | Minus |
CG7549-PA | 1563 | CG7549-RA | 655..1563 | 925..17 | 4520 | 99.8 | Minus |
CG7549-PB | 909 | CG7549-RB | 1..909 | 925..17 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1745 | 925..17 | 4530 | 99.9 | Minus |
mtg-RE | 2399 | CG7549-RE | 960..1868 | 925..17 | 4530 | 99.9 | Minus |
mtg-RH | 2233 | CG7549-RH | 794..1702 | 925..17 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260187 | 431..17 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 8259119..8259459 | 925..585 | 1690 | 99.7 | Minus |
3R | 32079331 | 3R | 8259545..8259705 | 588..428 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:52 has no hits.
BS07562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:31 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:52 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:54:34 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 953..1880 | 3..933 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:20 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 788..1715 | 3..933 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:20 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259113..8259457 | 587..933 | 98 | -> | Minus |
3R | 8259547..8259702 | 431..586 | 100 | -> | Minus |
3R | 8259774..8260200 | 3..430 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:54:34 Download gff for
BS07562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084835..4085179 | 587..933 | 98 | -> | Minus |
arm_3R | 4085269..4085424 | 431..586 | 100 | -> | Minus |
arm_3R | 4085496..4085922 | 3..430 | 98 | | Minus |
BS07562.5prime Sequence
923 bp (828 high quality bases) assembled on 2006-01-06
> BS07562.5prime
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACT
BS07562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7549-PC | 1692 | CG7549-RC | 784..1690 | 17..923 | 4535 | 100 | Plus |
CG7549-PA | 1563 | CG7549-RA | 655..1561 | 17..923 | 4535 | 100 | Plus |
CG7549-PB | 909 | CG7549-RB | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1743 | 17..923 | 4535 | 100 | Plus |
mtg-RE | 2399 | CG7549-RE | 960..1866 | 17..923 | 4535 | 100 | Plus |
mtg-RH | 2233 | CG7549-RH | 794..1700 | 17..923 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260185 | 511..923 | 2065 | 100 | Plus |
3R | 32079331 | 3R | 8259119..8259459 | 17..357 | 1705 | 100 | Plus |
3R | 32079331 | 3R | 8259545..8259705 | 354..514 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:49:08 has no hits.
BS07562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:32 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:07:54 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-PB | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:20:47 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 955..1865 | 10..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:42 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 790..1700 | 10..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:42 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259115..8259457 | 10..355 | 99 | -> | Plus |
3R | 8259547..8259702 | 356..511 | 100 | -> | Plus |
3R | 8259774..8260185 | 512..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:20:47 Download gff for
BS07562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084837..4085179 | 10..355 | 99 | -> | Plus |
arm_3R | 4085269..4085424 | 356..511 | 100 | -> | Plus |
arm_3R | 4085496..4085907 | 512..923 | 100 | | Plus |
BS07562.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635905
> BS07562.complete
GAAGTTATCAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCG
GTAAGGAGCACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAG
GAGCCCAAGTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGC
TGCTAACGTAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGC
AGCAGCTAAAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAA
GAGTTTATGCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAAC
GACAACCACTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGT
CCAAGGTAATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAG
AACTTTGACGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTT
CTCCTGCGCTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACC
TTGGCTGCATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTG
CGGAAGTCGTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTT
AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCT
ACGACTCCAACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTC
ACCTATTTCTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGA
CAAAGACGAGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGG
GCGTGGCCCGGCGCCAGGAGCAAGCCAAGAAGGCGGAGCTGAGGGTGGAG
GAGCAGCGCAGCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGA
GGCAGAGCAGCAGCTATCCAACTAGAAGCTTTCTAGACCAT
BS07562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 1548 | CG7549-PF | 640..1548 | 17..925 | 4545 | 100 | Plus |
mtg-RE | 1671 | CG7549-PE | 763..1671 | 17..925 | 4545 | 100 | Plus |
mtg-RH | 1164 | CG7549-PH | 256..1164 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-RF | 2276 | CG7549-RF | 837..1745 | 17..925 | 4545 | 100 | Plus |
mtg-RE | 2399 | CG7549-RE | 960..1868 | 17..925 | 4545 | 100 | Plus |
mtg-RH | 2233 | CG7549-RH | 794..1702 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8259773..8260187 | 511..925 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 8259119..8259459 | 17..357 | 1705 | 100 | Plus |
3R | 32079331 | 3R | 8259545..8259705 | 354..514 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:47:46 has no hits.
BS07562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:06:52 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:45:44 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 25..950 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:40 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RE | 959..1867 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:06:52 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7549-RB | 25..950 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:04 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtg-RH | 794..1702 | 17..925 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:04 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8259119..8259457 | 17..355 | 100 | -> | Plus |
3R | 8259547..8259702 | 356..511 | 100 | -> | Plus |
3R | 8259774..8260187 | 512..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:40 Download gff for
BS07562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4084841..4085179 | 17..355 | 100 | -> | Plus |
arm_3R | 4085269..4085424 | 356..511 | 100 | -> | Plus |
arm_3R | 4085496..4085909 | 512..925 | 100 | | Plus |
BS07562.pep Sequence
Translation from 16 to 924
> BS07562.pep
MPQSIARIANVGKEHRTVSSHPNYLQFEEPKFDLKDVTVEELAAAANVTV
DTIKHAIYVREQQLKAEHRAQLAAKLREEFMRTSTVRTTTTTTTTTTTTP
RPQKSLAEHKVSKVMNAPKEYYPVGYDKNFDDNFKSKVDLPPTSFSCAKQ
KHFPGLYADTDLGCMVFHVCALTDDGMVRKSFLCPENTLFDQTILKCNWW
FYVDCSSSTSVYDSNIPISKSYQLMKSLTYFSKYAGGQRHEQGGDKDENA
LDIDSLRESMEGVARRQEQAKKAELRVEEQRSMPKEDHEHVVPAEAEQQL
SN*
BS07562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtg-PH | 387 | CG7549-PH | 86..387 | 1..302 | 1583 | 100 | Plus |
mtg-PG | 387 | CG7549-PG | 86..387 | 1..302 | 1583 | 100 | Plus |
mtg-PF | 515 | CG7549-PF | 214..515 | 1..302 | 1583 | 100 | Plus |
mtg-PE | 556 | CG7549-PE | 255..556 | 1..302 | 1583 | 100 | Plus |
CG32036-PC | 173 | CG32036-PC | 26..160 | 110..235 | 178 | 29.6 | Plus |