Clone BS07567 Report

Search the DGRC for BS07567

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptnemy-RB
Protein status:BS07567.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07567.3prime Sequence

834 bp (827 high quality bases) assembled on 2006-01-06

> BS07567.3prime
ATGGTCTAGAAAGCTTCTAAATGCGCTCCGTGACGTAGACCTTCGCCGAG
GCGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAA
GATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGT
TCTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATC
AGTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAA
GCTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCT
CACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGC
ACGAACATGCCCATTGTCACGAAGCCCAGCCACGAGTGGAGGCTATAGAA
GTTGACCTTATGCAACGCGTCGTGGGAAGCGAAGACGGATATGAAACCCA
GGGCGATGCACGGAATGGCCACGGCGTGGAAGAACATGTGGATCAGCTTC
ACATAGATTTGCTTCACGCAGCGGCACAGACGATAGATCAAGATGGAAAA
TCCGGAGAGCGTGACGAAGCCAGCAATCATGAGGATGGGATGCAGATTGA
ACTGCTGCTTGGGACTCTCCGACCAGGCGAAGCCATCGCGGTAGAACATC
ACCCAGAAGAGGGTTAGCACCAGCACGCCCACCAGCAGGATCGTGGACAG
GATGACGATCAGCAAGTATTCGCACCAGGAGCAGCAATTCCAGGCATTAT
CTGGATCCTCCTCATAGCGCGATGTTGTCGTTCCTCCACGCGGCATTTTG
GCCAAGTGACGATCTCGCATGTCGACTGATAACT

BS07567.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PE 804 CG8776-RE 1..804 820..17 4020 100 Minus
CG8776-PB 804 CG8776-RB 1..804 820..17 4020 100 Minus
CG8776-PA 873 CG8776-RA 120..873 770..17 3770 100 Minus
CG8776-PD 633 CG8776-RD 1..633 649..17 3165 100 Minus
CG8776-PC 633 CG8776-RC 1..633 649..17 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 1804 CG8776-RB 254..1058 820..16 4025 100 Minus
nemy-RG 1849 CG8776-RG 299..1103 820..16 4025 100 Minus
nemy-RE 2224 CG8776-RE 766..1570 820..16 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 547..770 1120 100 Plus
2R 25286936 2R 12660678..12660900 324..546 1115 100 Plus
2R 25286936 2R 12660457..12660630 159..332 855 99.4 Plus
2R 25286936 2R 12660243..12660387 16..160 725 100 Plus
2R 25286936 2R 12664984..12665034 770..820 255 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:10:53 has no hits.

BS07567.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:41 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PB 1..804 17..820 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:07 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PB 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:22 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 760..1570 16..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:30 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 760..1570 16..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:30 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660243..12660385 16..158 100 <- Plus
2R 12660457..12660621 159..323 100 <- Plus
2R 12660678..12660900 324..546 100 <- Plus
2R 12660973..12661196 547..770 100 <- Plus
2R 12664985..12665040 771..826 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:22 Download gff for BS07567.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547748..8547890 16..158 100 <- Plus
arm_2R 8547962..8548126 159..323 100 <- Plus
arm_2R 8548183..8548405 324..546 100 <- Plus
arm_2R 8548478..8548701 547..770 100 <- Plus
arm_2R 8552490..8552545 771..826 96   Plus

BS07567.5prime Sequence

834 bp (792 high quality bases) assembled on 2006-01-06

> BS07567.5prime
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCT
ACGTCACGGAGCGCATTTAGAAGCTTTCTAGACC

BS07567.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PE 804 CG8776-RE 1..804 17..820 4020 100 Plus
CG8776-PB 804 CG8776-RB 1..804 17..820 4020 100 Plus
CG8776-PA 873 CG8776-RA 120..873 67..820 3770 100 Plus
CG8776-PD 633 CG8776-RD 1..633 188..820 3165 100 Plus
CG8776-PC 633 CG8776-RC 1..633 188..820 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 1804 CG8776-RB 254..1058 17..821 4025 100 Plus
nemy-RG 1849 CG8776-RG 299..1103 17..821 4025 100 Plus
nemy-RE 2224 CG8776-RE 766..1570 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 290..67 1120 100 Minus
2R 25286936 2R 12660678..12660900 513..291 1115 100 Minus
2R 25286936 2R 12660457..12660630 678..505 855 99.4 Minus
2R 25286936 2R 12660243..12660387 821..677 725 100 Minus
2R 25286936 2R 12664984..12665034 67..17 255 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:03:25 has no hits.

BS07567.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:42 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PB 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:08 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PB 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:56 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 760..1570 11..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:20 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 760..1570 11..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:20 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660243..12660385 679..821 100 <- Minus
2R 12660457..12660621 514..678 100 <- Minus
2R 12660678..12660900 291..513 100 <- Minus
2R 12660973..12661196 67..290 100 <- Minus
2R 12664985..12665040 11..66 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:56 Download gff for BS07567.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547748..8547890 679..821 100 <- Minus
arm_2R 8547962..8548126 514..678 100 <- Minus
arm_2R 8548183..8548405 291..513 100 <- Minus
arm_2R 8548478..8548701 67..290 100 <- Minus
arm_2R 8552490..8552545 11..66 96   Minus

BS07567.complete Sequence

836 bp (836 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635906

> BS07567.complete
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCT
ACGTCACGGAGCGCATTTAGAAGCTTTCTAGACCAT

BS07567.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 804 CG8776-PB 1..804 17..820 4020 100 Plus
nemy-RG 804 CG8776-PG 1..804 17..820 4020 100 Plus
nemy-RE 804 CG8776-PE 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 1804 CG8776-RB 254..1058 17..821 4025 100 Plus
nemy-RG 1849 CG8776-RG 299..1103 17..821 4025 100 Plus
nemy-RE 2224 CG8776-RE 766..1570 17..821 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 290..67 1120 100 Minus
2R 25286936 2R 12660678..12660900 513..291 1115 100 Minus
2R 25286936 2R 12660457..12660630 678..505 855 99.4 Minus
2R 25286936 2R 12660243..12660387 821..677 725 100 Minus
2R 25286936 2R 12664984..12665034 67..17 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:46:05 has no hits.

BS07567.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:02 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RB 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:20 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RB 246..1056 11..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:11 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 766..1569 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:02 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RB 246..1056 11..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:33 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RE 766..1569 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:33 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660244..12660385 679..820 100 <- Minus
2R 12660457..12660621 514..678 100 <- Minus
2R 12660678..12660900 291..513 100 <- Minus
2R 12660973..12661196 67..290 100 <- Minus
2R 12664985..12665034 17..66 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:11 Download gff for BS07567.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547749..8547890 679..820 100 <- Minus
arm_2R 8547962..8548126 514..678 100 <- Minus
arm_2R 8548183..8548405 291..513 100 <- Minus
arm_2R 8548478..8548701 67..290 100 <- Minus
arm_2R 8552490..8552539 17..66 100   Minus

BS07567.pep Sequence

Translation from 16 to 819

> BS07567.pep
MRDRHLAKMPRGGTTTSRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVL
VLTLFWVMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCR
CVKQIYVKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGF
VTMGMFVLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAI
ATSVTGLIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAV
RRSNAPASAKVYVTERI*

BS07567.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PB 267 CG8776-PB 1..267 1..267 1398 100 Plus
nemy-PG 267 CG8776-PG 1..267 1..267 1398 100 Plus
nemy-PE 267 CG8776-PE 1..267 1..267 1398 100 Plus
nemy-PK 266 CG8776-PK 1..266 1..267 1382 99.6 Plus
nemy-PA 290 CG8776-PA 41..290 18..267 1308 100 Plus