Clone Sequence Records
BS07567.3prime Sequence
834 bp (827 high quality bases) assembled on 2006-01-06
> BS07567.3prime
ATGGTCTAGAAAGCTTCTAAATGCGCTCCGTGACGTAGACCTTCGCCGAG
GCGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAA
GATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGT
TCTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATC
AGTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAA
GCTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCT
CACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGC
ACGAACATGCCCATTGTCACGAAGCCCAGCCACGAGTGGAGGCTATAGAA
GTTGACCTTATGCAACGCGTCGTGGGAAGCGAAGACGGATATGAAACCCA
GGGCGATGCACGGAATGGCCACGGCGTGGAAGAACATGTGGATCAGCTTC
ACATAGATTTGCTTCACGCAGCGGCACAGACGATAGATCAAGATGGAAAA
TCCGGAGAGCGTGACGAAGCCAGCAATCATGAGGATGGGATGCAGATTGA
ACTGCTGCTTGGGACTCTCCGACCAGGCGAAGCCATCGCGGTAGAACATC
ACCCAGAAGAGGGTTAGCACCAGCACGCCCACCAGCAGGATCGTGGACAG
GATGACGATCAGCAAGTATTCGCACCAGGAGCAGCAATTCCAGGCATTAT
CTGGATCCTCCTCATAGCGCGATGTTGTCGTTCCTCCACGCGGCATTTTG
GCCAAGTGACGATCTCGCATGTCGACTGATAACT
BS07567.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PE | 804 | CG8776-RE | 1..804 | 820..17 | 4020 | 100 | Minus |
CG8776-PB | 804 | CG8776-RB | 1..804 | 820..17 | 4020 | 100 | Minus |
CG8776-PA | 873 | CG8776-RA | 120..873 | 770..17 | 3770 | 100 | Minus |
CG8776-PD | 633 | CG8776-RD | 1..633 | 649..17 | 3165 | 100 | Minus |
CG8776-PC | 633 | CG8776-RC | 1..633 | 649..17 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RB | 1804 | CG8776-RB | 254..1058 | 820..16 | 4025 | 100 | Minus |
nemy-RG | 1849 | CG8776-RG | 299..1103 | 820..16 | 4025 | 100 | Minus |
nemy-RE | 2224 | CG8776-RE | 766..1570 | 820..16 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 547..770 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 12660678..12660900 | 324..546 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12660457..12660630 | 159..332 | 855 | 99.4 | Plus |
2R | 25286936 | 2R | 12660243..12660387 | 16..160 | 725 | 100 | Plus |
2R | 25286936 | 2R | 12664984..12665034 | 770..820 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:10:53 has no hits.
BS07567.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:41 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PB | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:07 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PB | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:22 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 760..1570 | 16..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:30 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 760..1570 | 16..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:30 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660243..12660385 | 16..158 | 100 | <- | Plus |
2R | 12660457..12660621 | 159..323 | 100 | <- | Plus |
2R | 12660678..12660900 | 324..546 | 100 | <- | Plus |
2R | 12660973..12661196 | 547..770 | 100 | <- | Plus |
2R | 12664985..12665040 | 771..826 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:22 Download gff for
BS07567.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547748..8547890 | 16..158 | 100 | <- | Plus |
arm_2R | 8547962..8548126 | 159..323 | 100 | <- | Plus |
arm_2R | 8548183..8548405 | 324..546 | 100 | <- | Plus |
arm_2R | 8548478..8548701 | 547..770 | 100 | <- | Plus |
arm_2R | 8552490..8552545 | 771..826 | 96 | | Plus |
BS07567.5prime Sequence
834 bp (792 high quality bases) assembled on 2006-01-06
> BS07567.5prime
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCT
ACGTCACGGAGCGCATTTAGAAGCTTTCTAGACC
BS07567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PE | 804 | CG8776-RE | 1..804 | 17..820 | 4020 | 100 | Plus |
CG8776-PB | 804 | CG8776-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG8776-PA | 873 | CG8776-RA | 120..873 | 67..820 | 3770 | 100 | Plus |
CG8776-PD | 633 | CG8776-RD | 1..633 | 188..820 | 3165 | 100 | Plus |
CG8776-PC | 633 | CG8776-RC | 1..633 | 188..820 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RB | 1804 | CG8776-RB | 254..1058 | 17..821 | 4025 | 100 | Plus |
nemy-RG | 1849 | CG8776-RG | 299..1103 | 17..821 | 4025 | 100 | Plus |
nemy-RE | 2224 | CG8776-RE | 766..1570 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 290..67 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 513..291 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 678..505 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660243..12660387 | 821..677 | 725 | 100 | Minus |
2R | 25286936 | 2R | 12664984..12665034 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:03:25 has no hits.
BS07567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:42 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PB | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:08 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PB | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:56 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 760..1570 | 11..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:20 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 760..1570 | 11..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:20 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660243..12660385 | 679..821 | 100 | <- | Minus |
2R | 12660457..12660621 | 514..678 | 100 | <- | Minus |
2R | 12660678..12660900 | 291..513 | 100 | <- | Minus |
2R | 12660973..12661196 | 67..290 | 100 | <- | Minus |
2R | 12664985..12665040 | 11..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:56 Download gff for
BS07567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547748..8547890 | 679..821 | 100 | <- | Minus |
arm_2R | 8547962..8548126 | 514..678 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 291..513 | 100 | <- | Minus |
arm_2R | 8548478..8548701 | 67..290 | 100 | <- | Minus |
arm_2R | 8552490..8552545 | 11..66 | 96 | | Minus |
BS07567.complete Sequence
836 bp (836 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635906
> BS07567.complete
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCT
ACGTCACGGAGCGCATTTAGAAGCTTTCTAGACCAT
BS07567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RB | 804 | CG8776-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
nemy-RG | 804 | CG8776-PG | 1..804 | 17..820 | 4020 | 100 | Plus |
nemy-RE | 804 | CG8776-PE | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RB | 1804 | CG8776-RB | 254..1058 | 17..821 | 4025 | 100 | Plus |
nemy-RG | 1849 | CG8776-RG | 299..1103 | 17..821 | 4025 | 100 | Plus |
nemy-RE | 2224 | CG8776-RE | 766..1570 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 290..67 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 513..291 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 678..505 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660243..12660387 | 821..677 | 725 | 100 | Minus |
2R | 25286936 | 2R | 12664984..12665034 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:46:05 has no hits.
BS07567.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:05:02 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RB | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:43:20 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RB | 246..1056 | 11..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:11 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 766..1569 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:05:02 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RB | 246..1056 | 11..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:33 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RE | 766..1569 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:33 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660244..12660385 | 679..820 | 100 | <- | Minus |
2R | 12660457..12660621 | 514..678 | 100 | <- | Minus |
2R | 12660678..12660900 | 291..513 | 100 | <- | Minus |
2R | 12660973..12661196 | 67..290 | 100 | <- | Minus |
2R | 12664985..12665034 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:11 Download gff for
BS07567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547749..8547890 | 679..820 | 100 | <- | Minus |
arm_2R | 8547962..8548126 | 514..678 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 291..513 | 100 | <- | Minus |
arm_2R | 8548478..8548701 | 67..290 | 100 | <- | Minus |
arm_2R | 8552490..8552539 | 17..66 | 100 | | Minus |
BS07567.pep Sequence
Translation from 16 to 819
> BS07567.pep
MRDRHLAKMPRGGTTTSRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVL
VLTLFWVMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCR
CVKQIYVKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGF
VTMGMFVLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAI
ATSVTGLIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAV
RRSNAPASAKVYVTERI*
BS07567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-PB | 267 | CG8776-PB | 1..267 | 1..267 | 1398 | 100 | Plus |
nemy-PG | 267 | CG8776-PG | 1..267 | 1..267 | 1398 | 100 | Plus |
nemy-PE | 267 | CG8776-PE | 1..267 | 1..267 | 1398 | 100 | Plus |
nemy-PK | 266 | CG8776-PK | 1..266 | 1..267 | 1382 | 99.6 | Plus |
nemy-PA | 290 | CG8776-PA | 41..290 | 18..267 | 1308 | 100 | Plus |