Clone Sequence Records
BS07568.3prime Sequence
979 bp (819 high quality bases) assembled on 2006-01-06
> BS07568.3prime
ATGGTCTAGAAAGCTTTTAGCCCGCGAAGAAACACCTATAGAGCATGTAG
AGGATGCCGAAGATCCAGATGCCCTTGTAGACCTTGTCCACCACCCACAT
CACCTTCATGTGCCTCCTTGCGGCCGGAATCGATTCGTCTGACTCCTTGA
GGATCAGTCGTCGGGCGCAGAGCACACAGTTGGTGAAGTAGTCGATAAGG
TCCAGCTCGATCTTCTCGATCACGTAGGTGCGCCGTTCCTTGTTGTTCAT
CAGCTTGCGCAGCTTCACCGCCTCCGAGTTGTCAAAGTTCCAAACGTTGT
TGGCATAGTACTCGAATACTTCGAATCCCTTGTAGATGCGGTTTTGAACG
CGGCACAATACCGGCGGATAGCGAAGTATCCAGAGCAGAGCGTCCACAAA
GAGAGCAGGCATCCACTGGAAGAGGACCATGCAGATGAAGTGCACCCAAT
AGTTGGACTTCATCGAACCACCTGGATACCAAGCTACGCCGTTAAGTGGC
ACCTTGTTCTCAATCACCCAGCGACCCAGCTCGATGATCTCCGCCCAGGA
CACTTTGATGTCGTTGGACGAGGTCATGTGTGCAACCCGATTGGTCTTAT
CTGTGCCCGCTGTGATGTTCCTCCAGCTGGCCACTAGTATACCGTTAACA
GCCACATCCACTGGCAGGAAATCGCCGTAGCCGGAGGAATTGCAGTACAT
GGTGCGGATGACACCCTTTCCGGCTCCGATAAGCAGGCCGGTGGGTCCGT
TGATGTTGTCCGTCCAGCCGGGAATGGGCTCCTTCCAGATGGGTATGACG
ATCGAGGGGCGCAGGATTACGGCGGGAAGCTCTTCGAACTTCTCCCACAC
CAGCGCCTCAGCCAGTGACTTGGTGTAGGCATACGTGTTTGGGATAGCCC
CGAGCACCTTGCGCTCGATGGTGGCCACCTCGTCGTCCGTCAGCCACTCG
CATGCCTGCATCACCTTGTGCGGATCTGC
BS07568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PA | 1554 | CG1441-RA | 592..1554 | 979..17 | 4765 | 99.7 | Minus |
CG1441-PB | 1554 | CG1441-RB | 592..1554 | 979..17 | 4765 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 724..1688 | 979..15 | 4795 | 99.8 | Minus |
CG1441-RA | 1866 | CG1441-RA | 727..1691 | 979..15 | 4795 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9899349..9900227 | 101..979 | 4365 | 99.8 | Plus |
2R | 25286936 | 2R | 9899193..9899279 | 15..101 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:49:44 has no hits.
BS07568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:43 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PA | 592..1554 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:09 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PB | 592..1554 | 17..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:39 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 727..1697 | 9..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:20 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 727..1697 | 9..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:20 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9899187..9899279 | 9..101 | 96 | <- | Plus |
2R | 9899350..9900227 | 102..979 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:39 Download gff for
BS07568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5786692..5786784 | 9..101 | 96 | <- | Plus |
arm_2R | 5786855..5787732 | 102..979 | 99 | | Plus |
BS07568.5prime Sequence
869 bp (864 high quality bases) assembled on 2006-01-06
> BS07568.5prime
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAA
BS07568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PA | 1554 | CG1441-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
CG1441-PB | 1554 | CG1441-RB | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 133..985 | 17..869 | 4265 | 100 | Plus |
CG1441-RA | 1866 | CG1441-RA | 136..988 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9899966..9900394 | 869..441 | 2145 | 100 | Minus |
2R | 25286936 | 2R | 9900976..9901142 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 9900513..9900677 | 441..277 | 825 | 100 | Minus |
2R | 25286936 | 2R | 9900776..9900870 | 277..183 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:06:24 has no hits.
BS07568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:44 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:10 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PB | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:47 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 133..988 | 14..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:24 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 133..988 | 14..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:24 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9899966..9900393 | 442..869 | 100 | <- | Minus |
2R | 9900513..9900676 | 278..441 | 100 | <- | Minus |
2R | 9900776..9900869 | 184..277 | 100 | <- | Minus |
2R | 9900976..9901145 | 14..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:47 Download gff for
BS07568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5788281..5788374 | 184..277 | 100 | <- | Minus |
arm_2R | 5788481..5788650 | 14..183 | 99 | | Minus |
arm_2R | 5787471..5787898 | 442..869 | 100 | <- | Minus |
arm_2R | 5788018..5788181 | 278..441 | 100 | <- | Minus |
BS07568.complete Sequence
1586 bp (1586 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635907
> BS07568.complete
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGCAATTC
CTCCGGCTACGGCGATTTCCTGCCAGTGGATGTGGCTGTTAACGGTATAC
TAGTGGCCAGCTGGAGGAACATCACAGCGGGCACAGATAAGACCAATCGG
GTTGCACACATGACCTCGTCCAACGACATCAAAGTGTCCTGGGCGGAGAT
CATCGAGCTGGGTCGCTGGGTGATTGAGAACAAGGTGCCACTTAACGGCG
TAGCTTGGTATCCAGGTGGTTCGATGAAGTCCAACTATTGGGTGCACTTC
ATCTGCATGGTCCTCTTCCAGTGGATGCCTGCTCTCTTTGTGGACGCTCT
GCTCTGGATACTTCGCTATCCGCCGGTATTGTGCCGCGTTCAAAACCGCA
TCTACAAGGGATTCGAAGTATTCGAGTACTATGCCAACAACGTTTGGAAC
TTTGACAACTCGGAGGCGGTGAAGCTGCGCAAGCTGATGAACAACAAGGA
ACGGCGCACCTACGTGATCGAGAAGATCGAGCTGGACCTTATCGACTACT
TCACCAACTGTGTGCTCTGCGCCCGACGACTGATCCTCAAGGAGTCAGAC
GAATCGATTCCGGCCGCAAGGAGGCACATGAAGGTGATGTGGGTGGTGGA
CAAGGTCTACAAGGGCATCTGGATCTTCGGCATCCTCTACATGCTCTATA
GGTGTTTCTTCGCGGGCTAAAAGCTTTCTAGACCAT
BS07568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1554 | CG1441-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG1441-RA | 1554 | CG1441-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 133..1688 | 17..1572 | 7780 | 100 | Plus |
CG1441-RA | 1866 | CG1441-RA | 136..1691 | 17..1572 | 7780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9899349..9900394 | 1486..441 | 5230 | 100 | Minus |
2R | 25286936 | 2R | 9900976..9901142 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 9900513..9900677 | 441..277 | 825 | 100 | Minus |
2R | 25286936 | 2R | 9900776..9900870 | 277..183 | 475 | 100 | Minus |
2R | 25286936 | 2R | 9899193..9899279 | 1572..1486 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:12:54 has no hits.
BS07568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:23 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:21 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 29..1593 | 14..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:58 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 136..1687 | 17..1568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:23 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 29..1593 | 14..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:54 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 136..1687 | 17..1568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:54 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9899197..9899279 | 1486..1568 | 100 | <- | Minus |
2R | 9899350..9900393 | 442..1485 | 100 | <- | Minus |
2R | 9900513..9900676 | 278..441 | 100 | <- | Minus |
2R | 9900776..9900869 | 184..277 | 100 | <- | Minus |
2R | 9900976..9901142 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:58 Download gff for
BS07568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5786702..5786784 | 1486..1568 | 100 | <- | Minus |
arm_2R | 5786855..5787898 | 442..1485 | 100 | <- | Minus |
arm_2R | 5788018..5788181 | 278..441 | 100 | <- | Minus |
arm_2R | 5788281..5788374 | 184..277 | 100 | <- | Minus |
arm_2R | 5788481..5788647 | 17..183 | 100 | | Minus |
BS07568.pep Sequence
Translation from 16 to 1569
> BS07568.pep
MTAKPKFVYEKDDRGTIGEIDDNEVDRIAECFKGRSLFITGGTGFLGKVL
VEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQNVLFDQVKQMRGEEH
ILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNA
VFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADP
HKVMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEELPA
VILRPSIVIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGD
FLPVDVAVNGILVASWRNITAGTDKTNRVAHMTSSNDIKVSWAEIIELGR
WVIENKVPLNGVAWYPGGSMKSNYWVHFICMVLFQWMPALFVDALLWILR
YPPVLCRVQNRIYKGFEVFEYYANNVWNFDNSEAVKLRKLMNNKERRTYV
IEKIELDLIDYFTNCVLCARRLILKESDESIPAARRHMKVMWVVDKVYKG
IWIFGILYMLYRCFFAG*
BS07568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PB | 517 | CG1441-PB | 1..517 | 1..517 | 2751 | 100 | Plus |
CG1441-PA | 517 | CG1441-PA | 1..517 | 1..517 | 2751 | 100 | Plus |
CG30427-PG | 506 | CG30427-PG | 4..486 | 24..508 | 926 | 37.9 | Plus |
CG30427-PC | 506 | CG30427-PC | 4..486 | 24..508 | 926 | 37.9 | Plus |
CG12268-PC | 531 | CG12268-PC | 7..488 | 19..499 | 921 | 38.3 | Plus |