Clone BS07568 Report

Search the DGRC for BS07568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG1441-RA
Protein status:BS07568.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07568.3prime Sequence

979 bp (819 high quality bases) assembled on 2006-01-06

> BS07568.3prime
ATGGTCTAGAAAGCTTTTAGCCCGCGAAGAAACACCTATAGAGCATGTAG
AGGATGCCGAAGATCCAGATGCCCTTGTAGACCTTGTCCACCACCCACAT
CACCTTCATGTGCCTCCTTGCGGCCGGAATCGATTCGTCTGACTCCTTGA
GGATCAGTCGTCGGGCGCAGAGCACACAGTTGGTGAAGTAGTCGATAAGG
TCCAGCTCGATCTTCTCGATCACGTAGGTGCGCCGTTCCTTGTTGTTCAT
CAGCTTGCGCAGCTTCACCGCCTCCGAGTTGTCAAAGTTCCAAACGTTGT
TGGCATAGTACTCGAATACTTCGAATCCCTTGTAGATGCGGTTTTGAACG
CGGCACAATACCGGCGGATAGCGAAGTATCCAGAGCAGAGCGTCCACAAA
GAGAGCAGGCATCCACTGGAAGAGGACCATGCAGATGAAGTGCACCCAAT
AGTTGGACTTCATCGAACCACCTGGATACCAAGCTACGCCGTTAAGTGGC
ACCTTGTTCTCAATCACCCAGCGACCCAGCTCGATGATCTCCGCCCAGGA
CACTTTGATGTCGTTGGACGAGGTCATGTGTGCAACCCGATTGGTCTTAT
CTGTGCCCGCTGTGATGTTCCTCCAGCTGGCCACTAGTATACCGTTAACA
GCCACATCCACTGGCAGGAAATCGCCGTAGCCGGAGGAATTGCAGTACAT
GGTGCGGATGACACCCTTTCCGGCTCCGATAAGCAGGCCGGTGGGTCCGT
TGATGTTGTCCGTCCAGCCGGGAATGGGCTCCTTCCAGATGGGTATGACG
ATCGAGGGGCGCAGGATTACGGCGGGAAGCTCTTCGAACTTCTCCCACAC
CAGCGCCTCAGCCAGTGACTTGGTGTAGGCATACGTGTTTGGGATAGCCC
CGAGCACCTTGCGCTCGATGGTGGCCACCTCGTCGTCCGTCAGCCACTCG
CATGCCTGCATCACCTTGTGCGGATCTGC

BS07568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PA 1554 CG1441-RA 592..1554 979..17 4765 99.7 Minus
CG1441-PB 1554 CG1441-RB 592..1554 979..17 4765 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 724..1688 979..15 4795 99.8 Minus
CG1441-RA 1866 CG1441-RA 727..1691 979..15 4795 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9899349..9900227 101..979 4365 99.8 Plus
2R 25286936 2R 9899193..9899279 15..101 435 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:49:44 has no hits.

BS07568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:43 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PA 592..1554 17..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:09 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PB 592..1554 17..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:39 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 727..1697 9..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:20 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 727..1697 9..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:20 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9899187..9899279 9..101 96 <- Plus
2R 9899350..9900227 102..979 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:39 Download gff for BS07568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5786692..5786784 9..101 96 <- Plus
arm_2R 5786855..5787732 102..979 99   Plus

BS07568.5prime Sequence

869 bp (864 high quality bases) assembled on 2006-01-06

> BS07568.5prime
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAA

BS07568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PA 1554 CG1441-RA 1..853 17..869 4265 100 Plus
CG1441-PB 1554 CG1441-RB 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 133..985 17..869 4265 100 Plus
CG1441-RA 1866 CG1441-RA 136..988 17..869 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9899966..9900394 869..441 2145 100 Minus
2R 25286936 2R 9900976..9901142 183..17 835 100 Minus
2R 25286936 2R 9900513..9900677 441..277 825 100 Minus
2R 25286936 2R 9900776..9900870 277..183 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:06:24 has no hits.

BS07568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:16:44 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:10 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PB 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:47 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 133..988 14..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:24 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 133..988 14..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:24 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9899966..9900393 442..869 100 <- Minus
2R 9900513..9900676 278..441 100 <- Minus
2R 9900776..9900869 184..277 100 <- Minus
2R 9900976..9901145 14..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:47 Download gff for BS07568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5788281..5788374 184..277 100 <- Minus
arm_2R 5788481..5788650 14..183 99   Minus
arm_2R 5787471..5787898 442..869 100 <- Minus
arm_2R 5788018..5788181 278..441 100 <- Minus

BS07568.complete Sequence

1586 bp (1586 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635907

> BS07568.complete
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGCAATTC
CTCCGGCTACGGCGATTTCCTGCCAGTGGATGTGGCTGTTAACGGTATAC
TAGTGGCCAGCTGGAGGAACATCACAGCGGGCACAGATAAGACCAATCGG
GTTGCACACATGACCTCGTCCAACGACATCAAAGTGTCCTGGGCGGAGAT
CATCGAGCTGGGTCGCTGGGTGATTGAGAACAAGGTGCCACTTAACGGCG
TAGCTTGGTATCCAGGTGGTTCGATGAAGTCCAACTATTGGGTGCACTTC
ATCTGCATGGTCCTCTTCCAGTGGATGCCTGCTCTCTTTGTGGACGCTCT
GCTCTGGATACTTCGCTATCCGCCGGTATTGTGCCGCGTTCAAAACCGCA
TCTACAAGGGATTCGAAGTATTCGAGTACTATGCCAACAACGTTTGGAAC
TTTGACAACTCGGAGGCGGTGAAGCTGCGCAAGCTGATGAACAACAAGGA
ACGGCGCACCTACGTGATCGAGAAGATCGAGCTGGACCTTATCGACTACT
TCACCAACTGTGTGCTCTGCGCCCGACGACTGATCCTCAAGGAGTCAGAC
GAATCGATTCCGGCCGCAAGGAGGCACATGAAGGTGATGTGGGTGGTGGA
CAAGGTCTACAAGGGCATCTGGATCTTCGGCATCCTCTACATGCTCTATA
GGTGTTTCTTCGCGGGCTAAAAGCTTTCTAGACCAT

BS07568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1554 CG1441-PB 1..1554 17..1570 7770 100 Plus
CG1441-RA 1554 CG1441-PA 1..1554 17..1570 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 133..1688 17..1572 7780 100 Plus
CG1441-RA 1866 CG1441-RA 136..1691 17..1572 7780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9899349..9900394 1486..441 5230 100 Minus
2R 25286936 2R 9900976..9901142 183..17 835 100 Minus
2R 25286936 2R 9900513..9900677 441..277 825 100 Minus
2R 25286936 2R 9900776..9900870 277..183 475 100 Minus
2R 25286936 2R 9899193..9899279 1572..1486 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:12:54 has no hits.

BS07568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:23 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 1..1554 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:21 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 29..1593 14..1578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:58 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 136..1687 17..1568 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:23 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 29..1593 14..1578 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:54 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 136..1687 17..1568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:54 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9899197..9899279 1486..1568 100 <- Minus
2R 9899350..9900393 442..1485 100 <- Minus
2R 9900513..9900676 278..441 100 <- Minus
2R 9900776..9900869 184..277 100 <- Minus
2R 9900976..9901142 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:58 Download gff for BS07568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5786702..5786784 1486..1568 100 <- Minus
arm_2R 5786855..5787898 442..1485 100 <- Minus
arm_2R 5788018..5788181 278..441 100 <- Minus
arm_2R 5788281..5788374 184..277 100 <- Minus
arm_2R 5788481..5788647 17..183 100   Minus

BS07568.pep Sequence

Translation from 16 to 1569

> BS07568.pep
MTAKPKFVYEKDDRGTIGEIDDNEVDRIAECFKGRSLFITGGTGFLGKVL
VEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQNVLFDQVKQMRGEEH
ILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNA
VFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADP
HKVMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEELPA
VILRPSIVIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGD
FLPVDVAVNGILVASWRNITAGTDKTNRVAHMTSSNDIKVSWAEIIELGR
WVIENKVPLNGVAWYPGGSMKSNYWVHFICMVLFQWMPALFVDALLWILR
YPPVLCRVQNRIYKGFEVFEYYANNVWNFDNSEAVKLRKLMNNKERRTYV
IEKIELDLIDYFTNCVLCARRLILKESDESIPAARRHMKVMWVVDKVYKG
IWIFGILYMLYRCFFAG*

BS07568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PB 517 CG1441-PB 1..517 1..517 2751 100 Plus
CG1441-PA 517 CG1441-PA 1..517 1..517 2751 100 Plus
CG30427-PG 506 CG30427-PG 4..486 24..508 926 37.9 Plus
CG30427-PC 506 CG30427-PC 4..486 24..508 926 37.9 Plus
CG12268-PC 531 CG12268-PC 7..488 19..499 921 38.3 Plus