Clone BS07581 Report

Search the DGRC for BS07581

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG5455-RA
Protein status:BS07581.pep: full length peptide match
Sequenced Size:2099

Clone Sequence Records

BS07581.3prime Sequence

838 bp (836 high quality bases) assembled on 2006-01-06

> BS07581.3prime
ATGGTCTAGAAAGCTTTTAGCACACCTTCTCAATCATTTTCACCAGTTCT
TTGTACAAAATACAATCCCGTCCTCGTGGTTTGCAGATCTCTCGATGATC
CAGACGAATACCGCAGACGTCGCCAATTCCAGGATCCGCTGAGTCCACTC
CCACAATGCGAAGATACAGCACTGACATGAGCGTCAAGGCGGTCTCCACG
AAACTAAACACCTCGATCTTAAGATGACCCAGATGATATAGTCCCGCAAA
TCTCCGATGTAAATCCAGCAGGTACTTGTTATTTTTTTCAATCTCTAGCA
ACTCCACGGAGCGGGAGAGTAGTGGCGCCTTGATGCTGGCCAAGTGGGAT
CCTCGATGGGGCACCGAGTAAAAGAAGCAACCGCGGGCAGATCGCCAAAG
CGGGGTCATCGCAGGACGACCGCTTTCCCAGGCGTCTACCATCAGTTGCT
TGATGAAGAGTCCACCCTTCGAGTGGCCCACATAGATAATAGGACGACCA
TGGCCAACGCGATGCTGAATGAGCAGCTCGGCCATCTCACGAGACCTTTG
GATTAAGCTGGAGCGCGGCTCCTTGCTTTTCCACAGCGGTCTCCAAAGGT
ACTGATCAGTGGTGTAGTTTAAGGCAATAACCCGCACGCCGGGACAATCC
AGTGGAAGCCAATCCCCAGGCCAGCACTTGGAGTAGTTTGGATCATTTGG
AGATGGCTTGCTCTTGCGGGCGGCCTTACGAGGCGTGGCTGGTGAGGGGG
GACGTGGGCGGTTATCCTTCCCATTGGTCCCCCCCTCTTCATTGCCATTG
GCCTGCAGCATGGACTCCAACTCTGCCTGTAGCAAACG

BS07581.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-PA 2067 CG5455-RA 1246..2067 838..17 4110 100 Minus
CG5455-PB 2067 CG5455-RB 1246..2067 838..17 4110 100 Minus
CG5455-PC 2067 CG5455-RC 1246..2067 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-RB 2882 CG5455-RB 1455..2276 838..17 4110 100 Minus
CG5455-RA 2890 CG5455-RA 1463..2284 838..17 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26468243..26468802 838..279 2785 99.8 Minus
3R 32079331 3R 26468857..26469003 282..136 735 100 Minus
3R 32079331 3R 26469283..26469402 136..17 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:53:52 has no hits.

BS07581.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:04 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-PB 1246..2067 17..838 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:40 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-PC 1246..2067 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:45 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 1463..2286 13..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:39 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 1463..2286 13..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:39 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26468243..26468798 283..838 100 -> Minus
3R 26468857..26469003 136..282 100 -> Minus
3R 26469284..26469404 13..135 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:45 Download gff for BS07581.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22293965..22294520 283..838 100 -> Minus
arm_3R 22294579..22294725 136..282 100 -> Minus
arm_3R 22295006..22295126 13..135 98   Minus

BS07581.5prime Sequence

845 bp (815 high quality bases) assembled on 2006-01-06

> BS07581.5prime
GAAGTTATCAGTCGACATGTTTGTTAGCGATTCTGAGCCAGCTCAAGAAT
CATTTGCCTGCAATGGCAATCCCCCAGTGGCAAACGATGGCGCAGAAATC
AAGAACCTGAAGAACAATAACCGAAGCGAAAACAGAAGCGCCCATCTTGG
AGGTGGTGGAGAAGAAGACAACAGCTCACCACTGCAGGAAATCGATGAAC
ATTACGTCTGCGACATTGCCATGATGCGAATAGGTGGGGAGGAGAGCCTA
CCGGTGACACACAATGAGCCAGTGGATGAATCACCACCGCTGGCCCACAA
TGAAAGTACAAACAATGAGAACGAGGTGGAGATCGATCGCCAGGAGGAGG
AGCAGGCGGTCAGCGATCTGGTGCGATCGAGCAGTGCCGGTGCCCTCATG
GAGGCAGACAGCAAAAATGGGGGCAGCATGCGAGTGGTTTTTGGCATCCT
GGTGCGACTAGTTCTTCCACTGGCCAATGGAGTAGCCAGGGGCATCAAGG
GCATACGCGATGTTCGCGTGCTGAGGGTTCTCCAGAATCTGGCCTCCAGC
CGGCAGGCCCTCACCAATCTGGTGGCCTTTGCCGCCAACACTATATCACT
GAATCTTTCTTCGGTTCAGGTTTCCAATCGCATGGGGCCCCTGCTGAAGC
TCCTGAAAATGCGCAAATCACAGGATGGCCTTGAGAGTCTTCCCGACACA
TTGAGTGCGCCCTCCACTCCCTGCACTCCCTGTCCAACCAGCAATCCAAT
GCAGGGTCCGCCCTTTTACACCGTTCGCTCGGACGCACCGAACTGTTGTA
CAATAAACATCCTGGCCGAGCCGCCACCGGGTCAACCGATACGAG

BS07581.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-PA 2067 CG5455-RA 1..829 17..845 4145 100 Plus
CG5455-PB 2067 CG5455-RB 1..829 17..845 4145 100 Plus
CG5455-PC 2067 CG5455-RC 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-RB 2882 CG5455-RB 210..1038 17..845 4145 100 Plus
CG5455-RA 2890 CG5455-RA 218..1046 17..845 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26466682..26467070 17..405 1945 100 Plus
3R 32079331 3R 26467543..26467768 620..845 1130 100 Plus
3R 32079331 3R 26467132..26467346 406..620 1075 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:16:06 has no hits.

BS07581.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:05 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-PB 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:41 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-PC 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:31 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 215..1046 14..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:11 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 215..1046 14..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:11 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26466679..26467070 14..405 99 -> Plus
3R 26467132..26467346 406..620 100 -> Plus
3R 26467544..26467768 621..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:31 Download gff for BS07581.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22292401..22292792 14..405 99 -> Plus
arm_3R 22292854..22293068 406..620 100 -> Plus
arm_3R 22293266..22293490 621..845 100   Plus

BS07581.complete Sequence

2099 bp assembled on 2008-08-14

GenBank Submission: FJ635908

> BS07581.complete
GAAGTTATCAGTCGACATGTTTGTTAGCGATTCTGAGCCAGCTCAAGAAT
CATTTGCCTGCAATGGCAATCCCCCAGTGGCAAACGATGGCGCAGAAATC
AAGAACCTGAAGAACAATAACCGAAGCGAAAACAGAAGCGCCCATCTTGG
AGGTGGTGGAGAAGAAGACAACAGCTCACCACTGCAGGAAATCGATGAAC
ATTACGTCTGCGACATTGCCATGATGCGAATAGGTGGGGAGGAGAGCCTA
CCGGTGACACACAATGAGCCAGTGGATGAATCACCACCGCTGGCCCACAA
TGAAAGTACAAACAATGAGAACGAGGTGGAGATCGATCGCCAGGAGGAGG
AGCAGGCGGTCAGCGATCTGGTGCGATCGAGCAGTGCCGGTGCCCTCATG
GAGGCAGACAGCAAAAATGGGGGCAGCATGCGAGTGGTTTTTGGCATCCT
GGTGCGACTAGTTCTTCCACTGGCCAATGGAGTAGCCAGGGGCATCAAGG
GCATACGCGATGTTCGCGTGCTGAGGGTTCTCCAGAATCTGGCCTCCAGC
CGGCAGGCCCTCACCAATCTGGTGGCCTTTGCCGCCAACACTATATCACT
GAATCTTTCTTCGGTTCAGGTTTCCAATCGCATGGGGCCCCTGCTGAAGC
TCCTGAAAATGCGCAAATCACAGGATGGCCTTGAGAGTCTTCCCGACACA
TTGAGTGCGCCCTCCACTCCCTGCACTCCCTGTCCAACCAGCAATCCAAT
GCAGGGTCCGCCCTTTTACACCGTTCGCTCGGACGCACCGAACTGTTGTA
CAATAAACATCCTGGCCGAGCCGCCACCGGGTCAACCGATACGAGCAGAT
ATTGTGCTCATCCATGGTCTACATGGATCTTTGGTGAACACATGGAAACA
AGGACTCTGGCAGAACGATCGCCAGCCGGTGGAGTTTGAAAGACCACCAC
GTCCGCCAGTTCGTCCACCAAAACGACCTCGTCACTCCCGTAGTGCAGCG
ATTCATCCAGCTCCGCGGGAGAAGCGAGCAAAGTTTGCTTCCCTCAACCG
ATGTATGGACACCCCAGATGATTCTCCAGTGCGGCGAAGGACACGGCTCC
AGAAGTCTATGCCAATGCAGCCGGAAGACTTCCAGATTAATGCTTCCGAT
AGCGATGATAGCGACTATGCTTATGTTTGCGGAGAGCCTGAAGAAATCCA
GATTTGCGAGGGCATAGAGTACAGCTTTCCCACTTTTCGGCTCAGGATGC
AGGATAACAGCCGTTTGCTACAGGCAGAGTTGGAGTCCATGCTGCAGGCC
AATGGCAATGAAGAGGGGGGGACCAATGGGAAGGATAACCGCCCACGTCC
CCCCTCACCAGCCACGCCTCGTAAGGCCGCCCGCAAGAGCAAGCCATCTC
CAAATGATCCAAACTACTCCAAGTGCTGGCCTGGGGATTGGCTTCCACTG
GATTGTCCCGGCGTGCGGGTTATTGCCTTAAACTACACCACTGATCAGTA
CCTTTGGAGACCGCTGTGGAAAAGCAAGGAGCCGCGCTCCAGCTTAATCC
AAAGGTCTCGTGAGATGGCCGAGCTGCTCATTCAGCATCGCGTTGGCCAT
GGTCGTCCTATTATCTATGTGGGCCACTCGAAGGGTGGACTCTTCATCAA
GCAACTGATGGTAGACGCCTGGGAAAGCGGTCGTCCTGCGATGACCCCGC
TTTGGCGATCTGCCCGCGGTTGCTTCTTTTACTCGGTGCCCCATCGAGGA
TCCCACTTGGCCAGCATCAAGGCGCCACTACTCTCCCGCTCCGTGGAGTT
GCTAGAGATTGAAAAAAATAACAAGTACCTGCTGGATTTACATCGGAGAT
TTGCGGGACTATATCATCTGGGTCATCTTAAGATCGAGGTGTTTAGTTTC
GTGGAGACCGCCTTGACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGG
AGTGGACTCAGCGGATCCTGGAATTGGCGACGTCTGCGGTATTCGTCTGG
ATCATCGAGAGATCTGCAAACCACGAGGACGGGATTGTATTTTGTACAAA
GAACTGGTGAAAATGATTGAGAAGGTGTGCTAAAAGCTTTCTAGACCAT

BS07581.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-RB 2067 CG5455-PB 1..2067 17..2083 10335 100 Plus
CG5455-RA 2067 CG5455-PA 1..2067 17..2083 10335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-RB 2882 CG5455-RB 210..2276 17..2083 10335 100 Plus
CG5455-RA 2890 CG5455-RA 218..2284 17..2083 10335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26468146..26468802 1165..1821 3270 99.8 Plus
3R 32079331 3R 26467543..26468087 620..1164 2725 100 Plus
3R 32079331 3R 26466682..26467070 17..405 1945 100 Plus
3R 32079331 3R 26467132..26467346 406..620 1075 100 Plus
3R 32079331 3R 26468857..26469003 1818..1964 735 100 Plus
3R 32079331 3R 26469283..26469402 1964..2083 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:42:00 has no hits.

BS07581.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:54 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
CG5455-RC 128..2199 14..2087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:07 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 224..2282 23..2081 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:05 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
CG5455-RC 137..2195 23..2081 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:02 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
CG5455-RA 224..2282 23..2081 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:02 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26467132..26467346 406..620 100 -> Plus
3R 26466688..26467070 23..405 100 -> Plus
3R 26467544..26468087 621..1164 100 -> Plus
3R 26468146..26468798 1165..1817 100 -> Plus
3R 26468857..26469003 1818..1964 100 -> Plus
3R 26469284..26469400 1965..2081 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:07 Download gff for BS07581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22292410..22292792 23..405 100 -> Plus
arm_3R 22292854..22293068 406..620 100 -> Plus
arm_3R 22293266..22293809 621..1164 100 -> Plus
arm_3R 22293868..22294520 1165..1817 100 -> Plus
arm_3R 22294579..22294725 1818..1964 100 -> Plus
arm_3R 22295006..22295122 1965..2081 100   Plus

BS07581.pep Sequence

Translation from 16 to 2082

> BS07581.pep
MFVSDSEPAQESFACNGNPPVANDGAEIKNLKNNNRSENRSAHLGGGGEE
DNSSPLQEIDEHYVCDIAMMRIGGEESLPVTHNEPVDESPPLAHNESTNN
ENEVEIDRQEEEQAVSDLVRSSSAGALMEADSKNGGSMRVVFGILVRLVL
PLANGVARGIKGIRDVRVLRVLQNLASSRQALTNLVAFAANTISLNLSSV
QVSNRMGPLLKLLKMRKSQDGLESLPDTLSAPSTPCTPCPTSNPMQGPPF
YTVRSDAPNCCTINILAEPPPGQPIRADIVLIHGLHGSLVNTWKQGLWQN
DRQPVEFERPPRPPVRPPKRPRHSRSAAIHPAPREKRAKFASLNRCMDTP
DDSPVRRRTRLQKSMPMQPEDFQINASDSDDSDYAYVCGEPEEIQICEGI
EYSFPTFRLRMQDNSRLLQAELESMLQANGNEEGGTNGKDNRPRPPSPAT
PRKAARKSKPSPNDPNYSKCWPGDWLPLDCPGVRVIALNYTTDQYLWRPL
WKSKEPRSSLIQRSREMAELLIQHRVGHGRPIIYVGHSKGGLFIKQLMVD
AWESGRPAMTPLWRSARGCFFYSVPHRGSHLASIKAPLLSRSVELLEIEK
NNKYLLDLHRRFAGLYHLGHLKIEVFSFVETALTLMSVLYLRIVGVDSAD
PGIGDVCGIRLDHREICKPRGRDCILYKELVKMIEKVC*

BS07581.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5455-PB 688 CG5455-PB 1..688 1..688 3640 100 Plus
CG5455-PA 688 CG5455-PA 1..688 1..688 3640 100 Plus
CG10383-PB 784 CG10383-PB 504..732 467..686 324 32.3 Plus
CG10383-PA 784 CG10383-PA 504..732 467..686 324 32.3 Plus