Clone Sequence Records
BS07581.3prime Sequence
838 bp (836 high quality bases) assembled on 2006-01-06
> BS07581.3prime
ATGGTCTAGAAAGCTTTTAGCACACCTTCTCAATCATTTTCACCAGTTCT
TTGTACAAAATACAATCCCGTCCTCGTGGTTTGCAGATCTCTCGATGATC
CAGACGAATACCGCAGACGTCGCCAATTCCAGGATCCGCTGAGTCCACTC
CCACAATGCGAAGATACAGCACTGACATGAGCGTCAAGGCGGTCTCCACG
AAACTAAACACCTCGATCTTAAGATGACCCAGATGATATAGTCCCGCAAA
TCTCCGATGTAAATCCAGCAGGTACTTGTTATTTTTTTCAATCTCTAGCA
ACTCCACGGAGCGGGAGAGTAGTGGCGCCTTGATGCTGGCCAAGTGGGAT
CCTCGATGGGGCACCGAGTAAAAGAAGCAACCGCGGGCAGATCGCCAAAG
CGGGGTCATCGCAGGACGACCGCTTTCCCAGGCGTCTACCATCAGTTGCT
TGATGAAGAGTCCACCCTTCGAGTGGCCCACATAGATAATAGGACGACCA
TGGCCAACGCGATGCTGAATGAGCAGCTCGGCCATCTCACGAGACCTTTG
GATTAAGCTGGAGCGCGGCTCCTTGCTTTTCCACAGCGGTCTCCAAAGGT
ACTGATCAGTGGTGTAGTTTAAGGCAATAACCCGCACGCCGGGACAATCC
AGTGGAAGCCAATCCCCAGGCCAGCACTTGGAGTAGTTTGGATCATTTGG
AGATGGCTTGCTCTTGCGGGCGGCCTTACGAGGCGTGGCTGGTGAGGGGG
GACGTGGGCGGTTATCCTTCCCATTGGTCCCCCCCTCTTCATTGCCATTG
GCCTGCAGCATGGACTCCAACTCTGCCTGTAGCAAACG
BS07581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-PA | 2067 | CG5455-RA | 1246..2067 | 838..17 | 4110 | 100 | Minus |
CG5455-PB | 2067 | CG5455-RB | 1246..2067 | 838..17 | 4110 | 100 | Minus |
CG5455-PC | 2067 | CG5455-RC | 1246..2067 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-RB | 2882 | CG5455-RB | 1455..2276 | 838..17 | 4110 | 100 | Minus |
CG5455-RA | 2890 | CG5455-RA | 1463..2284 | 838..17 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26468243..26468802 | 838..279 | 2785 | 99.8 | Minus |
3R | 32079331 | 3R | 26468857..26469003 | 282..136 | 735 | 100 | Minus |
3R | 32079331 | 3R | 26469283..26469402 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:52 has no hits.
BS07581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:04 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-PB | 1246..2067 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:40 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-PC | 1246..2067 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:45 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 1463..2286 | 13..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:39 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 1463..2286 | 13..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:39 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26468243..26468798 | 283..838 | 100 | -> | Minus |
3R | 26468857..26469003 | 136..282 | 100 | -> | Minus |
3R | 26469284..26469404 | 13..135 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:45 Download gff for
BS07581.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22293965..22294520 | 283..838 | 100 | -> | Minus |
arm_3R | 22294579..22294725 | 136..282 | 100 | -> | Minus |
arm_3R | 22295006..22295126 | 13..135 | 98 | | Minus |
BS07581.5prime Sequence
845 bp (815 high quality bases) assembled on 2006-01-06
> BS07581.5prime
GAAGTTATCAGTCGACATGTTTGTTAGCGATTCTGAGCCAGCTCAAGAAT
CATTTGCCTGCAATGGCAATCCCCCAGTGGCAAACGATGGCGCAGAAATC
AAGAACCTGAAGAACAATAACCGAAGCGAAAACAGAAGCGCCCATCTTGG
AGGTGGTGGAGAAGAAGACAACAGCTCACCACTGCAGGAAATCGATGAAC
ATTACGTCTGCGACATTGCCATGATGCGAATAGGTGGGGAGGAGAGCCTA
CCGGTGACACACAATGAGCCAGTGGATGAATCACCACCGCTGGCCCACAA
TGAAAGTACAAACAATGAGAACGAGGTGGAGATCGATCGCCAGGAGGAGG
AGCAGGCGGTCAGCGATCTGGTGCGATCGAGCAGTGCCGGTGCCCTCATG
GAGGCAGACAGCAAAAATGGGGGCAGCATGCGAGTGGTTTTTGGCATCCT
GGTGCGACTAGTTCTTCCACTGGCCAATGGAGTAGCCAGGGGCATCAAGG
GCATACGCGATGTTCGCGTGCTGAGGGTTCTCCAGAATCTGGCCTCCAGC
CGGCAGGCCCTCACCAATCTGGTGGCCTTTGCCGCCAACACTATATCACT
GAATCTTTCTTCGGTTCAGGTTTCCAATCGCATGGGGCCCCTGCTGAAGC
TCCTGAAAATGCGCAAATCACAGGATGGCCTTGAGAGTCTTCCCGACACA
TTGAGTGCGCCCTCCACTCCCTGCACTCCCTGTCCAACCAGCAATCCAAT
GCAGGGTCCGCCCTTTTACACCGTTCGCTCGGACGCACCGAACTGTTGTA
CAATAAACATCCTGGCCGAGCCGCCACCGGGTCAACCGATACGAG
BS07581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-PA | 2067 | CG5455-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
CG5455-PB | 2067 | CG5455-RB | 1..829 | 17..845 | 4145 | 100 | Plus |
CG5455-PC | 2067 | CG5455-RC | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-RB | 2882 | CG5455-RB | 210..1038 | 17..845 | 4145 | 100 | Plus |
CG5455-RA | 2890 | CG5455-RA | 218..1046 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26466682..26467070 | 17..405 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 26467543..26467768 | 620..845 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 26467132..26467346 | 406..620 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:16:06 has no hits.
BS07581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:05 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-PB | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:41 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-PC | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:31 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 215..1046 | 14..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:11 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 215..1046 | 14..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:11 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26466679..26467070 | 14..405 | 99 | -> | Plus |
3R | 26467132..26467346 | 406..620 | 100 | -> | Plus |
3R | 26467544..26467768 | 621..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:31 Download gff for
BS07581.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22292401..22292792 | 14..405 | 99 | -> | Plus |
arm_3R | 22292854..22293068 | 406..620 | 100 | -> | Plus |
arm_3R | 22293266..22293490 | 621..845 | 100 | | Plus |
BS07581.complete Sequence
2099 bp assembled on 2008-08-14
GenBank Submission: FJ635908
> BS07581.complete
GAAGTTATCAGTCGACATGTTTGTTAGCGATTCTGAGCCAGCTCAAGAAT
CATTTGCCTGCAATGGCAATCCCCCAGTGGCAAACGATGGCGCAGAAATC
AAGAACCTGAAGAACAATAACCGAAGCGAAAACAGAAGCGCCCATCTTGG
AGGTGGTGGAGAAGAAGACAACAGCTCACCACTGCAGGAAATCGATGAAC
ATTACGTCTGCGACATTGCCATGATGCGAATAGGTGGGGAGGAGAGCCTA
CCGGTGACACACAATGAGCCAGTGGATGAATCACCACCGCTGGCCCACAA
TGAAAGTACAAACAATGAGAACGAGGTGGAGATCGATCGCCAGGAGGAGG
AGCAGGCGGTCAGCGATCTGGTGCGATCGAGCAGTGCCGGTGCCCTCATG
GAGGCAGACAGCAAAAATGGGGGCAGCATGCGAGTGGTTTTTGGCATCCT
GGTGCGACTAGTTCTTCCACTGGCCAATGGAGTAGCCAGGGGCATCAAGG
GCATACGCGATGTTCGCGTGCTGAGGGTTCTCCAGAATCTGGCCTCCAGC
CGGCAGGCCCTCACCAATCTGGTGGCCTTTGCCGCCAACACTATATCACT
GAATCTTTCTTCGGTTCAGGTTTCCAATCGCATGGGGCCCCTGCTGAAGC
TCCTGAAAATGCGCAAATCACAGGATGGCCTTGAGAGTCTTCCCGACACA
TTGAGTGCGCCCTCCACTCCCTGCACTCCCTGTCCAACCAGCAATCCAAT
GCAGGGTCCGCCCTTTTACACCGTTCGCTCGGACGCACCGAACTGTTGTA
CAATAAACATCCTGGCCGAGCCGCCACCGGGTCAACCGATACGAGCAGAT
ATTGTGCTCATCCATGGTCTACATGGATCTTTGGTGAACACATGGAAACA
AGGACTCTGGCAGAACGATCGCCAGCCGGTGGAGTTTGAAAGACCACCAC
GTCCGCCAGTTCGTCCACCAAAACGACCTCGTCACTCCCGTAGTGCAGCG
ATTCATCCAGCTCCGCGGGAGAAGCGAGCAAAGTTTGCTTCCCTCAACCG
ATGTATGGACACCCCAGATGATTCTCCAGTGCGGCGAAGGACACGGCTCC
AGAAGTCTATGCCAATGCAGCCGGAAGACTTCCAGATTAATGCTTCCGAT
AGCGATGATAGCGACTATGCTTATGTTTGCGGAGAGCCTGAAGAAATCCA
GATTTGCGAGGGCATAGAGTACAGCTTTCCCACTTTTCGGCTCAGGATGC
AGGATAACAGCCGTTTGCTACAGGCAGAGTTGGAGTCCATGCTGCAGGCC
AATGGCAATGAAGAGGGGGGGACCAATGGGAAGGATAACCGCCCACGTCC
CCCCTCACCAGCCACGCCTCGTAAGGCCGCCCGCAAGAGCAAGCCATCTC
CAAATGATCCAAACTACTCCAAGTGCTGGCCTGGGGATTGGCTTCCACTG
GATTGTCCCGGCGTGCGGGTTATTGCCTTAAACTACACCACTGATCAGTA
CCTTTGGAGACCGCTGTGGAAAAGCAAGGAGCCGCGCTCCAGCTTAATCC
AAAGGTCTCGTGAGATGGCCGAGCTGCTCATTCAGCATCGCGTTGGCCAT
GGTCGTCCTATTATCTATGTGGGCCACTCGAAGGGTGGACTCTTCATCAA
GCAACTGATGGTAGACGCCTGGGAAAGCGGTCGTCCTGCGATGACCCCGC
TTTGGCGATCTGCCCGCGGTTGCTTCTTTTACTCGGTGCCCCATCGAGGA
TCCCACTTGGCCAGCATCAAGGCGCCACTACTCTCCCGCTCCGTGGAGTT
GCTAGAGATTGAAAAAAATAACAAGTACCTGCTGGATTTACATCGGAGAT
TTGCGGGACTATATCATCTGGGTCATCTTAAGATCGAGGTGTTTAGTTTC
GTGGAGACCGCCTTGACGCTCATGTCAGTGCTGTATCTTCGCATTGTGGG
AGTGGACTCAGCGGATCCTGGAATTGGCGACGTCTGCGGTATTCGTCTGG
ATCATCGAGAGATCTGCAAACCACGAGGACGGGATTGTATTTTGTACAAA
GAACTGGTGAAAATGATTGAGAAGGTGTGCTAAAAGCTTTCTAGACCAT
BS07581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-RB | 2067 | CG5455-PB | 1..2067 | 17..2083 | 10335 | 100 | Plus |
CG5455-RA | 2067 | CG5455-PA | 1..2067 | 17..2083 | 10335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-RB | 2882 | CG5455-RB | 210..2276 | 17..2083 | 10335 | 100 | Plus |
CG5455-RA | 2890 | CG5455-RA | 218..2284 | 17..2083 | 10335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26468146..26468802 | 1165..1821 | 3270 | 99.8 | Plus |
3R | 32079331 | 3R | 26467543..26468087 | 620..1164 | 2725 | 100 | Plus |
3R | 32079331 | 3R | 26466682..26467070 | 17..405 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 26467132..26467346 | 406..620 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 26468857..26469003 | 1818..1964 | 735 | 100 | Plus |
3R | 32079331 | 3R | 26469283..26469402 | 1964..2083 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:42:00 has no hits.
BS07581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:54 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RC | 128..2199 | 14..2087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:07 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 224..2282 | 23..2081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:05 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RC | 137..2195 | 23..2081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:02 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5455-RA | 224..2282 | 23..2081 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:02 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26467132..26467346 | 406..620 | 100 | -> | Plus |
3R | 26466688..26467070 | 23..405 | 100 | -> | Plus |
3R | 26467544..26468087 | 621..1164 | 100 | -> | Plus |
3R | 26468146..26468798 | 1165..1817 | 100 | -> | Plus |
3R | 26468857..26469003 | 1818..1964 | 100 | -> | Plus |
3R | 26469284..26469400 | 1965..2081 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:07 Download gff for
BS07581.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22292410..22292792 | 23..405 | 100 | -> | Plus |
arm_3R | 22292854..22293068 | 406..620 | 100 | -> | Plus |
arm_3R | 22293266..22293809 | 621..1164 | 100 | -> | Plus |
arm_3R | 22293868..22294520 | 1165..1817 | 100 | -> | Plus |
arm_3R | 22294579..22294725 | 1818..1964 | 100 | -> | Plus |
arm_3R | 22295006..22295122 | 1965..2081 | 100 | | Plus |
BS07581.pep Sequence
Translation from 16 to 2082
> BS07581.pep
MFVSDSEPAQESFACNGNPPVANDGAEIKNLKNNNRSENRSAHLGGGGEE
DNSSPLQEIDEHYVCDIAMMRIGGEESLPVTHNEPVDESPPLAHNESTNN
ENEVEIDRQEEEQAVSDLVRSSSAGALMEADSKNGGSMRVVFGILVRLVL
PLANGVARGIKGIRDVRVLRVLQNLASSRQALTNLVAFAANTISLNLSSV
QVSNRMGPLLKLLKMRKSQDGLESLPDTLSAPSTPCTPCPTSNPMQGPPF
YTVRSDAPNCCTINILAEPPPGQPIRADIVLIHGLHGSLVNTWKQGLWQN
DRQPVEFERPPRPPVRPPKRPRHSRSAAIHPAPREKRAKFASLNRCMDTP
DDSPVRRRTRLQKSMPMQPEDFQINASDSDDSDYAYVCGEPEEIQICEGI
EYSFPTFRLRMQDNSRLLQAELESMLQANGNEEGGTNGKDNRPRPPSPAT
PRKAARKSKPSPNDPNYSKCWPGDWLPLDCPGVRVIALNYTTDQYLWRPL
WKSKEPRSSLIQRSREMAELLIQHRVGHGRPIIYVGHSKGGLFIKQLMVD
AWESGRPAMTPLWRSARGCFFYSVPHRGSHLASIKAPLLSRSVELLEIEK
NNKYLLDLHRRFAGLYHLGHLKIEVFSFVETALTLMSVLYLRIVGVDSAD
PGIGDVCGIRLDHREICKPRGRDCILYKELVKMIEKVC*
BS07581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5455-PB | 688 | CG5455-PB | 1..688 | 1..688 | 3640 | 100 | Plus |
CG5455-PA | 688 | CG5455-PA | 1..688 | 1..688 | 3640 | 100 | Plus |
CG10383-PB | 784 | CG10383-PB | 504..732 | 467..686 | 324 | 32.3 | Plus |
CG10383-PA | 784 | CG10383-PA | 504..732 | 467..686 | 324 | 32.3 | Plus |