Clone Sequence Records
BS07582.3prime Sequence
866 bp (814 high quality bases) assembled on 2006-01-06
> BS07582.3prime
ATGGTCTAGAAAGCTTTTAAGAGAGTCCCAGCTGCGGCTTCTCCTTGAAG
AAGTACACCTCGTCACAATCGCAGGCGTGATCCGCTTCCCATTCAAGCAG
CGCTCGCTTAACAATGGGCAGGATGTGCTTTCTGGTGGCCTGGACGTTGT
GTTGGCGCAAGAAGCAGCCGCCCATAAAGCGGGTGTCCACCTCGTGAGGT
CGCAACTCCAATTTTGGATCGTTAGACTCCATCAGTGCTTGCTGGACGCG
TTGAACGAATTGGCCTTGGCCGGAGAGAGAGATCAAGGCCAGGTCACGCT
GCACCTGGCCATCGGCAGGTGATACATACATTCCCAGGATAACCAAAAGG
TTACTCTCCACGCCAAACTCGCGAACGGCTTTTTCGGCGCCGCTTTTCTC
CACAAAATCTCTGACTAGGATGGGCATTCCAGCTAAGGGAACCACCTGAC
GATCGGTTTGCAAGACCTTCATATCCTTGCGCAAAACTTCGGTGAGAGTT
AGCTTACTAATATCAGCCCTTGCAGCCACTAGCTCATCAAAAAGGCTACT
TCTTTGAGCGTCCTTACGGTTAAGCTCGCTCTCCAACTTCTGTACCATGG
CTTCGTCCTTTGGCCCGTAGCGCTTGGCCGCGGGTGCAAAATTAATTGTG
TCCAGCACGATGGTGGCGTGCAGCAGCTGGGCCACGCTAGTGGATCGGGG
TTGGTCCTCTGCCAAATACCGCTGGGCCACCAGAGTGGCGCAGGAACCCA
CCGAGGCATCTATGTCCAGTTGGCAGAGTGTTGGCAGCTGCTTGAAGGAT
GGACTGCTGTCCTCCAAGGGCCTGTGATCCAAAATTTCAGTAACATTTGG
CGCCAGCGGGCTTACA
BS07582.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3461-PA | 1218 | pn-RA | 369..1218 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 458..1307 | 866..17 | 4235 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181736..2182585 | 866..17 | 4235 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:33:26 has no hits.
BS07582.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:17:06 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:43 Download gff for
BS07582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3461-PA | 370..1218 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:17 Download gff for
BS07582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 459..1316 | 9..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:32 Download gff for
BS07582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 459..1316 | 9..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:32 Download gff for
BS07582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181737..2182594 | 9..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:17 Download gff for
BS07582.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075770..2076627 | 9..865 | 99 | | Minus |
BS07582.5prime Sequence
864 bp (771 high quality bases) assembled on 2006-01-06
> BS07582.5prime
GAAGTTATCAGTCGACATGTGCTTTCTACGATTTTTGGCCCAGGCCAGGG
GCACCTTGGGACGGCATCTGGCGGAGGCCTCACCAGTTGCCTGGGCTGCT
GCTCCCGACGTTTCCGGCCGGAAATTACATCTGGTAATGGGCAACGAATC
GTGTGACTTGGACTCCGCCGTTTCGGCCGTCACTTTGGCTTTTGTCTACG
CGCAGCGTCATCGGGAGCACGACTATGTACCTATACTGAACATTCCTCGC
CGGGACTACCCGTTGAAAACCGAGGTGGGCCACTTGTTTGTGAAATGTGG
GATTGCCGAGCCCGTGTTGCTCTTCCGAGACGATATTCCCCGGGAAGTGG
TCCAGGATGTGAACGTTATTCTCGTGGACCACCATGTAAGCCCGCTGGCG
CCAAATGTTACTGAAATTTTGGATCACAGGCCCTTGGAGGACAGCAGTCC
ATCCTTCAAGCAGCTGCCAACACTCTGCCAACTGGACATAGATGCCTCGG
TGGGTTCCTGCGCCACTCTGGTGGCCCAGCGGTATTTGGCAGAGGACCAA
CCCCGATCCACTAGCGTGGCCCAGCTGCTGCACGCCACCATCGTGCTGGA
CACAATTAATTTTGCACCCGCGGCCAAGCGCTACGGGCCAAAGGACGAAG
CCATGGTACAGAAGTTGGAGAGCGAGCTTAACCGTAAGGACGCTCAAAGA
AGTAGCCTTTTTGATGAGCTAGTGGCTGCAAGGGCTGATATTAGTAAGCT
AACTCTCACCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCAAACCGATC
GTCAGGTGGTTCCCTTAGCTGGAATGCCCATCCTAGTCAGAGATTTTGTG
GAGAAAAGCGGCGC
BS07582.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3461-PA | 1218 | pn-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 90..937 | 17..864 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181415..2182215 | 64..864 | 3990 | 99.9 | Plus |
| X | 23542271 | X | 2181300..2181347 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:32:39 has no hits.
BS07582.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 09:17:07 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:44 Download gff for
BS07582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3461-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:38 Download gff for
BS07582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..937 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:24 Download gff for
BS07582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..937 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:24 Download gff for
BS07582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181300..2181347 | 17..64 | 100 | -> | Plus |
| X | 2181416..2182215 | 65..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:38 Download gff for
BS07582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075333..2075380 | 17..64 | 100 | -> | Plus |
| arm_X | 2075449..2076248 | 65..864 | 99 | | Plus |
BS07582.complete Sequence
1250 bp (1250 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635909
> BS07582.complete
GAAGTTATCAGTCGACATGTGCTTTCTACGATTTTTGGCCCAGGCCAGGG
GCACCTTGGGACGGCATCTGGCGGAGGCCTCACCAGTTGCCTGGGCTGCT
GCTCCCGACGTTTCCGGCCGGAAATTACATCTGGTAATGGGCAACGAATC
GTGTGACTTGGACTCCGCCGTTTCGGCCGTCACTTTGGCTTTTGTCTACG
CGCAGCGTCATCGGGAGCACGACTATGTACCTATACTGAACATTCCTCGC
CGGGACTACCCGTTGAAAACCGAGGTGGGCCACTTGTTTGTGAAATGTGG
GATTGCCGAGCCCGTGTTGCTCTTCCGAGACGATATTCCCCGGGAAGTGG
TCCAGGATGTGAACGTTATTCTCGTGGACCACCATGTAAGCCCGCTGGCG
CCAAATGTTACTGAAATTTTGGATCACAGGCCCTTGGAGGACAGCAGTCC
ATCCTTCAAGCAGCTGCCAACACTCTGCCAACTGGACATAGATGCCTCGG
TGGGTTCCTGCGCCACTCTGGTGGCCCAGCGGTATTTGGCAGAGGACCAA
CCCCGATCCACTAGCGTGGCCCAGCTGCTGCACGCCACCATCGTGCTGGA
CACAATTAATTTTGCACCCGCGGCCAAGCGCTACGGGCCAAAGGACGAAG
CCATGGTACAGAAGTTGGAGAGCGAGCTTAACCGTAAGGACGCTCAAAGA
AGTAGCCTTTTTGATGAGCTAGTGGCTGCAAGGGCTGATATTAGTAAGCT
AACTCTCACCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCAAACCGATC
GTCAGGTGGTTCCCTTAGCTGGAATGCCCATCCTAGTCAGAGATTTTGTG
GAGAAAAGCGGCGCCGAAAAAGCCGTTCGCGAGTTTGGCGTGGAGAGTAA
CCTTTTGGTTATCCTGGGAATGTATGTATCACCTGCCGATGGCCAGGTGC
AGCGTGACCTGGCCTTGATCTCTCTCTCCGGCCAAGGCCAATTCGTTCAA
CGCGTCCAGCAAGCACTGATGGAGTCTAACGATCCAAAATTGGAGTTGCG
ACCTCACGAGGTGGACACCCGCTTTATGGGCGGCTGCTTCTTGCGCCAAC
ACAACGTCCAGGCCACCAGAAAGCACATCCTGCCCATTGTTAAGCGAGCG
CTGCTTGAATGGGAAGCGGATCACGCCTGCGATTGTGACGAGGTGTACTT
CTTCAAGGAGAAGCCGCAGCTGGGACTCTCTTAAAAGCTTTCTAGACCAT
BS07582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1218 | CG3461-PA | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 90..1307 | 17..1234 | 6075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181415..2182585 | 64..1234 | 5840 | 99.9 | Plus |
| X | 23542271 | X | 2181300..2181347 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:27 has no hits.
BS07582.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:24 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 1..1218 | 17..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:22 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 207..1433 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:21 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1305 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:24 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 207..1433 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:12 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1305 | 17..1232 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:12 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181300..2181347 | 17..64 | 100 | -> | Plus |
| X | 2181416..2182583 | 65..1232 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:21 Download gff for
BS07582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075333..2075380 | 17..64 | 100 | -> | Plus |
| arm_X | 2075449..2076616 | 65..1232 | 99 | | Plus |
BS07582.pep Sequence
Translation from 16 to 1233
> BS07582.pep
MCFLRFLAQARGTLGRHLAEASPVAWAAAPDVSGRKLHLVMGNESCDLDS
AVSAVTLAFVYAQRHREHDYVPILNIPRRDYPLKTEVGHLFVKCGIAEPV
LLFRDDIPREVVQDVNVILVDHHVSPLAPNVTEILDHRPLEDSSPSFKQL
PTLCQLDIDASVGSCATLVAQRYLAEDQPRSTSVAQLLHATIVLDTINFA
PAAKRYGPKDEAMVQKLESELNRKDAQRSSLFDELVAARADISKLTLTEV
LRKDMKVLQTDRQVVPLAGMPILVRDFVEKSGAEKAVREFGVESNLLVIL
GMYVSPADGQVQRDLALISLSGQGQFVQRVQQALMESNDPKLELRPHEVD
TRFMGGCFLRQHNVQATRKHILPIVKRALLEWEADHACDCDEVYFFKEKP
QLGLS*
BS07582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-PA | 405 | CG3461-PA | 1..405 | 1..405 | 2070 | 100 | Plus |
