Clone Sequence Records
BS07583.3prime Sequence
955 bp (796 high quality bases) assembled on 2006-01-06
> BS07583.3prime
ATGGTCTAGAAAGCTTCTAGTCTTGTGAATTCTGCCCAAGACTAATCTCC
CCCATTTCGGTACTGGAAAGGCTTGGCGACAAGGTCGTGGACCTGGAGTT
GCAAGCATTCTCATCCAGATTATAGTAATTCACTATTCGCTGTGGTGGTC
GGTTGGAGATGACCTCTACGATTTGATTCACAACCCATTTGGTCAATTTG
ATGACGGCCACGTGTGCCGCAAACTGCAGGATCATGGCTCCAAAGCCCTT
GTAGAGGCCACTAACTCCCTCGGAGACAATCGTTGTCTGATAGCAATCGA
CGACTCCTTGATAGTTTGTTAGAATGGGTACGACATCGTAGCCATTGTCG
AGGTTGTCGATTATAGTTCGTGTTCCCTGCAATTGCAGACGGTGTAGAAT
CGTTTCGAACGGGAAGAACATGACCTCAGTGGTTATGATAGCAATAAGGC
TGGCATAGATGTCCGCATTCTGTTGTTCCAGCGTGGTGTCCTGATACTTT
CCACCCTGGCCGTCCTGGGAATTCTTTATACGAAGCCGCATTATGCGTGA
GGACACGCCCCGTATCACGAGATTAAACAGATACTTGGTGATGCCAAAGG
AGACACTTGGCCCGATTAGAGCCCAGGCTGGTAGCATACGGCCCTTTTGC
GGAGAGCTCCAATAAAACAAGCGCAGACTTCCCTCCCGGAATACATCGAA
TAGACCGGGTTTCTCGCTGGCAATATCACTCTGCACCGTTTCGACGAGAG
AAGCTGCATAGAAGGGCACCACCAGGCCGATACTTATGCATTTGAGCAGG
AGATGCTGTCCGAAACGCTTTAGCGTGGTGCGACTATTCACATCCTTGGG
CCAGCTGGTCACCTTCGAGATAAAGTCGTCGATGGCCAGCGTCATGCCGC
GCACCAGTAGGCAGCTGCCCACGCCCTTTCACAGGGTCGTCAGTCCCTGC
CTTCT
BS07583.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 1266 | CG8931-RA | 328..1266 | 955..17 | 4670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 476..1414 | 955..17 | 4680 | 99.9 | Minus |
CG5755-RA | 1553 | CG5755-RA | 554..1306 | 946..185 | 300 | 70.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15985365 | 789..17 | 3865 | 100 | Minus |
X | 23542271 | X | 15984372..15984538 | 955..789 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 18097121..18097529 | 946..538 | 260 | 70.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:08:50 has no hits.
BS07583.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:08 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 328..1266 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:45 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 328..1266 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:03 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 476..1416 | 11..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:13 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 476..1416 | 11..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:13 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15984372..15984538 | 789..955 | 99 | -> | Minus |
X | 15984594..15985367 | 11..788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:03 Download gff for
BS07583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15878405..15878571 | 789..955 | 99 | -> | Minus |
arm_X | 15878627..15879400 | 11..788 | 99 | | Minus |
BS07583.5prime Sequence
881 bp (879 high quality bases) assembled on 2006-01-06
> BS07583.5prime
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGT
BS07583.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 1266 | CG8931-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 149..1013 | 17..881 | 4325 | 100 | Plus |
CG5755-RA | 1553 | CG5755-RA | 395..962 | 194..761 | 440 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15984964 | 510..881 | 1860 | 100 | Plus |
X | 23542271 | X | 15984188..15984538 | 160..510 | 1755 | 100 | Plus |
X | 23542271 | X | 15984014..15984127 | 49..162 | 570 | 100 | Plus |
2L | 23513712 | 2L | 18096962..18097529 | 194..761 | 425 | 71.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:17:19 has no hits.
BS07583.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:09 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:46 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:07 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 145..1013 | 10..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:35 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 145..1013 | 10..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:35 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15984014..15984127 | 49..162 | 100 | -> | Plus |
X | 15984191..15984538 | 163..510 | 100 | -> | Plus |
X | 15984594..15984964 | 511..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:07 Download gff for
BS07583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15878047..15878160 | 49..162 | 100 | -> | Plus |
arm_X | 15878224..15878571 | 163..510 | 100 | -> | Plus |
arm_X | 15878627..15878997 | 511..881 | 100 | | Plus |
BS07583.complete Sequence
1298 bp (1298 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635910
> BS07583.complete
GAAGTTATCAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAAT
TTCAAGCGGAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGG
ACTGGGGACCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACA
CTTGGGAAGCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCG
GCGTACAGTGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTT
GTGGTGCTGCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCA
TTTGCATCCCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGC
AGGGACTGACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGC
GGCATGACGCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCC
CAAGGATGTGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCC
TGCTCAAATGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCT
CTCGTCGAAACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATT
CGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGC
AAAAGGGCCGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCC
TTTGGCATCACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTC
ACGCATAATGCGGCTTCGTATAAAGAATTCCCAGGACGGCCAGGGTGGAA
AGTATCAGGACACCACGCTGGAACAACAGAATGCGGACATCTATGCCAGC
CTTATTGCTATCATAACCACTGAGGTCATGTTCTTCCCGTTCGAAACGAT
TCTACACCGTCTGCAATTGCAGGGAACACGAACTATAATCGACAACCTCG
ACAATGGCTACGATGTCGTACCCATTCTAACAAACTATCAAGGAGTCGTC
GATTGCTATCAGACAACGATTGTCTCCGAGGGAGTTAGTGGCCTCTACAA
GGGCTTTGGAGCCATGATCCTGCAGTTTGCGGCACACGTGGCCGTCATCA
AATTGACCAAATGGGTTGTGAATCAAATCGTAGAGGTCATCTCCAACCGA
CCACCACAGCGAATAGTGAATTACTATAATCTGGATGAGAATGCTTGCAA
CTCCAGGTCCACGACCTTGTCGCCAAGCCTTTCCAGTACCGAAATGGGGG
AGATTAGTCTTGGGCAGAATTCACAAGACTAGAAGCTTTCTAGACCAT
BS07583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1266 | CG8931-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG5755-RA | 1353 | CG5755-PA | 271..838 | 194..761 | 425 | 71.7 | Plus |
CG5755-RA | 1353 | CG5755-PA | 885..1182 | 817..1114 | 230 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-RA | 1454 | CG8931-RA | 149..1414 | 17..1282 | 6330 | 100 | Plus |
CG5755-RA | 1553 | CG5755-RA | 395..962 | 194..761 | 425 | 71.7 | Plus |
CG5755-RA | 1553 | CG5755-RA | 1009..1306 | 817..1114 | 230 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15984593..15985365 | 510..1282 | 3865 | 100 | Plus |
X | 23542271 | X | 15984188..15984538 | 160..510 | 1755 | 100 | Plus |
X | 23542271 | X | 15984014..15984127 | 49..162 | 570 | 100 | Plus |
2L | 23513712 | 2L | 18096962..18097529 | 194..761 | 425 | 71.7 | Plus |
2L | 23513712 | 2L | 18097576..18097873 | 817..1114 | 230 | 71.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:00 has no hits.
BS07583.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:27 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:28 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 143..1414 | 10..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:28 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 149..1414 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:27 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 143..1414 | 10..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:31 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8931-RA | 149..1414 | 17..1282 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:31 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15983920..15983951 | 17..48 | 100 | -> | Plus |
X | 15984014..15984127 | 49..162 | 100 | -> | Plus |
X | 15984191..15984538 | 163..510 | 100 | -> | Plus |
X | 15984594..15985365 | 511..1282 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:28 Download gff for
BS07583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15877953..15877984 | 17..48 | 100 | -> | Plus |
arm_X | 15878047..15878160 | 49..162 | 100 | -> | Plus |
arm_X | 15878224..15878571 | 163..510 | 100 | -> | Plus |
arm_X | 15878627..15879398 | 511..1282 | 100 | | Plus |
BS07583.pep Sequence
Translation from 16 to 1281
> BS07583.pep
MAGMNEYSSLKFQAEYETHDDHLGKEHRTGDRDQHLPVTYGPSKHLGSSL
EEREKAIVDVVGVQWVSLVTENLLSHPFVVLRRQCQVYNASRRYHLHPFQ
LLPSIVHLHRRQGLTTLWKGVGSCLLVRGMTLAIDDFISKVTSWPKDVNS
RTTLKRFGQHLLLKCISIGLVVPFYAASLVETVQSDIASEKPGLFDVFRE
GSLRLFYWSSPQKGRMLPAWALIGPSVSFGITKYLFNLVIRGVSSRIMRL
RIKNSQDGQGGKYQDTTLEQQNADIYASLIAIITTEVMFFPFETILHRLQ
LQGTRTIIDNLDNGYDVVPILTNYQGVVDCYQTTIVSEGVSGLYKGFGAM
ILQFAAHVAVIKLTKWVVNQIVEVISNRPPQRIVNYYNLDENACNSRSTT
LSPSLSSTEMGEISLGQNSQD*
BS07583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8931-PA | 421 | CG8931-PA | 1..421 | 1..421 | 2181 | 100 | Plus |
CG5755-PA | 450 | CG5755-PA | 2..449 | 6..421 | 1285 | 57.8 | Plus |