Clone Sequence Records
BS07586.5prime Sequence
969 bp (832 high quality bases) assembled on 2006-01-06
> BS07586.5prime
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTTGCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCCACTGCAA
BS07586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4979-PA | 1164 | sxe2-RA | 1..945 | 17..961 | 4675 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 273..1225 | 17..969 | 4705 | 99.6 | Plus |
sxe2-RA | 1583 | CG4979-RA | 229..1181 | 17..969 | 4705 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16086820 | 333..969 | 3125 | 99.4 | Plus |
3R | 32079331 | 3R | 16085878..16086122 | 93..337 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16085733..16085808 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:30:41 has no hits.
BS07586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:13 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:52 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4979-PA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:59 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1179 | 11..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:57 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1179 | 11..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:57 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16085729..16085808 | 11..92 | 95 | -> | Plus |
3R | 16085878..16086121 | 93..336 | 100 | -> | Plus |
3R | 16086188..16086818 | 337..967 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:59 Download gff for
BS07586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911451..11911530 | 11..92 | 95 | -> | Plus |
arm_3R | 11911600..11911843 | 93..336 | 100 | -> | Plus |
arm_3R | 11911910..11912540 | 337..967 | 99 | | Plus |
BS07586.3prime Sequence
941 bp (865 high quality bases) assembled on 2006-01-06
> BS07586.3prime
ATGGTCTAGAAAGCTTCTAGCCAATTGAACGCCGGTTTGCTGTCTCCCGA
ATAGTGGACGGCCGGGGTCGTTTAATGTGGACCAGCCCATCGCTGGTGCC
ATACGGAGACTGCGGCCGTGTGCTCAGATAAAAGATACCTCTTTTGGGGA
CTGCCGGTTCACCGCCCATGAACTCGTTGCCGGTGCATGTATTGACTGCA
TATTTTTCGCTGCCTCCGACGTTGCAGTTGCAGGTGGCCGATAGCACCGA
TTTCGCTGAGCTGCAGCGCAATGCGGCAAATGATTTCGGTTGCCGGACTG
ACTCGGCAAAGTAGAACATGGCCGCGAAGTGGTCGCAGACAAAATCAAAC
TCCGTGGCCGTGGCGTTGGGACAATGTGGCTGCCCGAGGCCCCAGTTGGC
AAAGAAGGAGGCATGACTGAGCTTAGTACTCGGATTGCCGAGCAGCGTTA
GATCCGTGTGAATTGACTCCACATACAGGGCATCGTTGACGTCCAGCCTC
TCTTCGGGTCCCAGGCTGAGTTGAGTGAGACCAGCGGGATCCAAGGCGAA
AATAGCACCAAGGCGATGCGGCCTTAACAGCTTTCCAGTCAATCCAGAGA
TGTGACTGCCGGCGCTGTGCCCAATCATATAGATTTGCTCGTAGGGAACT
CCTGTGTTGTCATGAAGAAACCGCAACATTTTGGCCACATTGGCAGCTAT
CGACGGAAGCTGCTTAGACACACGTGGATAGCTGATGTCCAACGACTGGC
GACTCCAGTCCAGAATTATGACGTTGTAATTGCCCCGGGACAGGTAGGCA
TCCTTGATGGCAGCATTCGAGCAGGTGACACTCTTTCCCGCCCAGCCATG
AATGGAGACCCTAACTGGGCATTTCGGATTGAAGTGCGAGTTCCTTAGCA
TGGTCAGATCTCCTGGTCGCAGCAGTTGACGCTCCTCCGGA
BS07586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4979-PA | 1164 | sxe2-RA | 240..1164 | 941..17 | 4600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 512..1437 | 941..16 | 4615 | 99.9 | Minus |
sxe2-RA | 1583 | CG4979-RA | 468..1393 | 941..16 | 4615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16087032 | 864..16 | 4245 | 100 | Minus |
3R | 32079331 | 3R | 16086041..16086122 | 941..860 | 395 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:46:58 has no hits.
BS07586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:12 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-PA | 241..1164 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:51 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4979-PA | 241..1164 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:34 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 469..1393 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:03 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 469..1393 | 16..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:03 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16086188..16087032 | 16..860 | 100 | | Minus |
3R | 16086042..16086121 | 861..940 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:34 Download gff for
BS07586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911764..11911843 | 861..940 | 98 | -> | Minus |
arm_3R | 11911910..11912754 | 16..860 | 100 | | Minus |
BS07586.complete Sequence
1196 bp (1196 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635911
> BS07586.complete
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCACCTGCAACTGCAACGTCGGAGGCAGCGAAAAATATGCA
GTCAATACATGCACCGGCAACGAGTTCATGGGCGGTGAACCGGCAGTCCC
CAAAAGAGGTATCTTTTATCTGAGCACACGGCCGCAGTCTCCGTATGGCA
CCAGCGATGGGCTGGTCCACATTAAACGACCCCGGCCGTCCACTATTCGG
GAGACAGCAAACCGGCGTTCAATTGGCTAGAAGCTTTCTAGACCAT
BS07586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1164 | CG4979-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
sxe2-RA | 1164 | CG4979-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-RB | 1627 | CG4979-RB | 273..1437 | 17..1181 | 5825 | 100 | Plus |
sxe2-RA | 1583 | CG4979-RA | 229..1393 | 17..1181 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16086184..16087032 | 333..1181 | 4245 | 100 | Plus |
3R | 32079331 | 3R | 16085878..16086122 | 93..337 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 16085733..16085808 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:37 has no hits.
BS07586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:25 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:24 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1393 | 11..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:19 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 229..1392 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:25 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 225..1393 | 11..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:39 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sxe2-RA | 229..1392 | 17..1180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:39 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16085733..16085808 | 17..92 | 100 | -> | Plus |
3R | 16085878..16086121 | 93..336 | 100 | -> | Plus |
3R | 16086188..16087031 | 337..1180 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:19 Download gff for
BS07586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11911455..11911530 | 17..92 | 100 | -> | Plus |
arm_3R | 11911600..11911843 | 93..336 | 100 | -> | Plus |
arm_3R | 11911910..11912753 | 337..1180 | 100 | | Plus |
BS07586.pep Sequence
Translation from 16 to 1179
> BS07586.pep
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIG*
BS07586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sxe2-PB | 387 | CG4979-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
sxe2-PA | 387 | CG4979-PA | 1..387 | 1..387 | 2052 | 100 | Plus |
CG4267-PB | 374 | CG4267-PB | 91..351 | 90..360 | 414 | 33.2 | Plus |
CG4267-PA | 374 | CG4267-PA | 91..351 | 90..360 | 414 | 33.2 | Plus |
CG6675-PC | 386 | CG6675-PC | 139..381 | 96..360 | 406 | 35.5 | Plus |