Clone BS07586 Report

Search the DGRC for BS07586

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptsxe2-RA
Protein status:BS07586.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07586.5prime Sequence

969 bp (832 high quality bases) assembled on 2006-01-06

> BS07586.5prime
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTTGCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCCACTGCAA

BS07586.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4979-PA 1164 sxe2-RA 1..945 17..961 4675 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 273..1225 17..969 4705 99.6 Plus
sxe2-RA 1583 CG4979-RA 229..1181 17..969 4705 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16086820 333..969 3125 99.4 Plus
3R 32079331 3R 16085878..16086122 93..337 1225 100 Plus
3R 32079331 3R 16085733..16085808 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:30:41 has no hits.

BS07586.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:13 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-PA 1..951 17..967 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:52 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4979-PA 1..951 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:33:59 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1179 11..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:57 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1179 11..967 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:57 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16085729..16085808 11..92 95 -> Plus
3R 16085878..16086121 93..336 100 -> Plus
3R 16086188..16086818 337..967 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:33:59 Download gff for BS07586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911451..11911530 11..92 95 -> Plus
arm_3R 11911600..11911843 93..336 100 -> Plus
arm_3R 11911910..11912540 337..967 99   Plus

BS07586.3prime Sequence

941 bp (865 high quality bases) assembled on 2006-01-06

> BS07586.3prime
ATGGTCTAGAAAGCTTCTAGCCAATTGAACGCCGGTTTGCTGTCTCCCGA
ATAGTGGACGGCCGGGGTCGTTTAATGTGGACCAGCCCATCGCTGGTGCC
ATACGGAGACTGCGGCCGTGTGCTCAGATAAAAGATACCTCTTTTGGGGA
CTGCCGGTTCACCGCCCATGAACTCGTTGCCGGTGCATGTATTGACTGCA
TATTTTTCGCTGCCTCCGACGTTGCAGTTGCAGGTGGCCGATAGCACCGA
TTTCGCTGAGCTGCAGCGCAATGCGGCAAATGATTTCGGTTGCCGGACTG
ACTCGGCAAAGTAGAACATGGCCGCGAAGTGGTCGCAGACAAAATCAAAC
TCCGTGGCCGTGGCGTTGGGACAATGTGGCTGCCCGAGGCCCCAGTTGGC
AAAGAAGGAGGCATGACTGAGCTTAGTACTCGGATTGCCGAGCAGCGTTA
GATCCGTGTGAATTGACTCCACATACAGGGCATCGTTGACGTCCAGCCTC
TCTTCGGGTCCCAGGCTGAGTTGAGTGAGACCAGCGGGATCCAAGGCGAA
AATAGCACCAAGGCGATGCGGCCTTAACAGCTTTCCAGTCAATCCAGAGA
TGTGACTGCCGGCGCTGTGCCCAATCATATAGATTTGCTCGTAGGGAACT
CCTGTGTTGTCATGAAGAAACCGCAACATTTTGGCCACATTGGCAGCTAT
CGACGGAAGCTGCTTAGACACACGTGGATAGCTGATGTCCAACGACTGGC
GACTCCAGTCCAGAATTATGACGTTGTAATTGCCCCGGGACAGGTAGGCA
TCCTTGATGGCAGCATTCGAGCAGGTGACACTCTTTCCCGCCCAGCCATG
AATGGAGACCCTAACTGGGCATTTCGGATTGAAGTGCGAGTTCCTTAGCA
TGGTCAGATCTCCTGGTCGCAGCAGTTGACGCTCCTCCGGA

BS07586.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4979-PA 1164 sxe2-RA 240..1164 941..17 4600 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 512..1437 941..16 4615 99.9 Minus
sxe2-RA 1583 CG4979-RA 468..1393 941..16 4615 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16087032 864..16 4245 100 Minus
3R 32079331 3R 16086041..16086122 941..860 395 98.8 Minus
Blast to na_te.dros performed on 2015-02-02 18:46:58 has no hits.

BS07586.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:12 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-PA 241..1164 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:51 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4979-PA 241..1164 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:34 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 469..1393 16..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:03 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 469..1393 16..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:03 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16086188..16087032 16..860 100   Minus
3R 16086042..16086121 861..940 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:34 Download gff for BS07586.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911764..11911843 861..940 98 -> Minus
arm_3R 11911910..11912754 16..860 100   Minus

BS07586.complete Sequence

1196 bp (1196 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635911

> BS07586.complete
GAAGTTATCAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACT
GGTTGCTGTGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCG
TCAGTTGACTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTC
GGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAA
GGCCCCGTCCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCC
CTCAATCCGGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCT
AAGGAACTCGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATG
GCTGGGCGGGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCC
TACCTGTCCCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCA
GTCGTTGGACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAG
CTGCCAATGTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTT
CCCTACGAGCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTC
TGGATTGACTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCG
CCTTGGATCCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGG
CTGGACGTCAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAAC
GCTGCTCGGCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCA
ACTGGGGCCTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTT
GATTTTGTCTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGT
CCGGCAACCGAAATCATTTGCCGCATTGCGCTGCAGCTCAGCGAAATCGG
TGCTATCGGCCACCTGCAACTGCAACGTCGGAGGCAGCGAAAAATATGCA
GTCAATACATGCACCGGCAACGAGTTCATGGGCGGTGAACCGGCAGTCCC
CAAAAGAGGTATCTTTTATCTGAGCACACGGCCGCAGTCTCCGTATGGCA
CCAGCGATGGGCTGGTCCACATTAAACGACCCCGGCCGTCCACTATTCGG
GAGACAGCAAACCGGCGTTCAATTGGCTAGAAGCTTTCTAGACCAT

BS07586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1164 CG4979-PB 1..1164 17..1180 5820 100 Plus
sxe2-RA 1164 CG4979-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-RB 1627 CG4979-RB 273..1437 17..1181 5825 100 Plus
sxe2-RA 1583 CG4979-RA 229..1393 17..1181 5825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16086184..16087032 333..1181 4245 100 Plus
3R 32079331 3R 16085878..16086122 93..337 1225 100 Plus
3R 32079331 3R 16085733..16085808 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:37 has no hits.

BS07586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:25 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:24 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1393 11..1181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:19 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 229..1392 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:25 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 225..1393 11..1181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:39 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
sxe2-RA 229..1392 17..1180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:39 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16085733..16085808 17..92 100 -> Plus
3R 16085878..16086121 93..336 100 -> Plus
3R 16086188..16087031 337..1180 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:19 Download gff for BS07586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11911455..11911530 17..92 100 -> Plus
arm_3R 11911600..11911843 93..336 100 -> Plus
arm_3R 11911910..11912753 337..1180 100   Plus

BS07586.pep Sequence

Translation from 16 to 1179

> BS07586.pep
MGSLTGMHISHWLLWTCLLLLGAAGTDASVDYFAYAPGKCEVSISDVIQG
MITTEAGVILGRPRPSQTKLLRYDLYTPLNPEERQLLRPGDLTMLRNSHF
NPKWPVRVSIHGWAGKSVTCSNAAIKDAYLSRGNYNVIILDWSRQSLDIS
YPRVSKQLPSIAANVAKMLRFLHDNTGVPYEQIYMIGHSAGSHISGLTGK
LLRPHRLGAIFALDPAGLTQLSLGPEERLDVNDALYVESIHTDLTLLGNP
STKLSHASFFANWGLGQPHCPNATATEFDFVCDHFAAMFYFAESVRQPKS
FAALRCSSAKSVLSATCNCNVGGSEKYAVNTCTGNEFMGGEPAVPKRGIF
YLSTRPQSPYGTSDGLVHIKRPRPSTIRETANRRSIG*

BS07586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
sxe2-PB 387 CG4979-PB 1..387 1..387 2052 100 Plus
sxe2-PA 387 CG4979-PA 1..387 1..387 2052 100 Plus
CG4267-PB 374 CG4267-PB 91..351 90..360 414 33.2 Plus
CG4267-PA 374 CG4267-PA 91..351 90..360 414 33.2 Plus
CG6675-PC 386 CG6675-PC 139..381 96..360 406 35.5 Plus