Clone BS07587 Report

Search the DGRC for BS07587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG7742-RA
Protein status:BS07587.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07587.3prime Sequence

924 bp (817 high quality bases) assembled on 2006-01-06

> BS07587.3prime
ATGGTCTAGAAAGCTTTTAGTCTCGACTTAGGGCTAGTTGCACTAGGGGC
AGCACCTTGATAGAGGACAAGTCTGCCAGAATCGCTTCGATGCTATCCAA
CGAGGCCACCTGCATGATGCTCTCCTTTCGAAAGCTAAGAATGATGATGG
CGAATAGAGGAAGGATCTCCAAGCTATCAAAGCCAAGGATCAGATCCCAG
AGGACCAGCAATTGATCGGGAGGCAAATGTCCGGAAAACGCTCGCATAAG
CCATTTGAAGACCACCCGCAGGGGCTGTATCTGAAGCTCTCGGAAATGGG
ACCATAACTGCGGTTCGTATGTCTGCAGCAGCTTCTCGAAGAGCAGGCAC
AGACTGACAATCCCTTGAGGATGCGTGTTTATGGTGGTCAAGCGATGGCA
GTACCGGATATAGAAGGCCCGGAATGTATAGTATAGACTCACCGGCGAGT
CATACAGATAACAAAAGGGGGCGGCAAACATGCAGATGCCGTGGAAGGGC
ACCACACCCGATGGAGGACCTTCGTAGGTCTTGCCCTTCACCGGAAACGT
CTCGTATTCCACACATCCACCGATATCGGTGTCCCGAGAAAAGCAGAGCA
GCACCTGGTAGAGCACGTCCTCGAACACAAAGTACTGGTCGTCGTTGGAG
GCCGTCAACTGAATGTCCTTGAAGACCAGTTTGTCAACGATGTGATCCGT
AGTCCAAACGGCATTGCGCAGCTTTTGCCAGTACTCAATATCGTAGTCAT
GTAGCTTGCTGTCCAGCACCGAAGCCCAGAGAGCTCCCCTATAAGGTGCG
GGTGTGCAGCCCTTCTTCAGAAACTGCTGGCACATGGGCGCATGCCTGGC
CTCCAGAATCCTCTGGCACTGAACCGTAAGATCCGGCACTCCCAAATAGC
TATCACTTCGCAGCAGATCCGCGT

BS07587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PA 1530 CG7742-RA 623..1530 924..17 4540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 893..1803 924..14 4555 100 Minus
CG7742-RB 1429 CG7742-RB 428..1338 924..14 4555 100 Minus
CG7742-RD 2119 CG7742-RD 1118..2028 924..14 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5212863..5213332 273..742 2350 100 Plus
2L 23513712 2L 5213387..5213569 742..924 915 100 Plus
2L 23513712 2L 5212486..5212663 14..191 890 100 Plus
2L 23513712 2L 5212715..5212796 191..272 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:05:01 has no hits.

BS07587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:14 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 623..1530 17..924 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:54 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 623..1530 17..924 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:51:57 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 767..1677 14..924 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:18 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RD 1118..2028 14..924 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:18 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5212486..5212662 14..190 100 <- Plus
2L 5212715..5212796 191..272 100 <- Plus
2L 5212863..5213332 273..742 100 <- Plus
2L 5213388..5213569 743..924 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:51:57 Download gff for BS07587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5212486..5212662 14..190 100 <- Plus
arm_2L 5212715..5212796 191..272 100 <- Plus
arm_2L 5212863..5213332 273..742 100 <- Plus
arm_2L 5213388..5213569 743..924 100   Plus

BS07587.5prime Sequence

939 bp (832 high quality bases) assembled on 2006-01-06

> BS07587.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCCTCAACGACGACCAGTACTTTGTGTT

BS07587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PA 1530 CG7742-RA 1..923 17..939 4565 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 266..1193 12..939 4595 99.7 Plus
CG7742-RD 2119 CG7742-RD 491..1418 12..939 4595 99.7 Plus
CG7742-RA 1768 CG7742-RA 140..1067 12..939 4595 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5214317..5214591 286..12 1360 99.6 Minus
2L 23513712 2L 5213387..5213640 821..568 1270 100 Minus
2L 23513712 2L 5213837..5214024 473..286 940 100 Minus
2L 23513712 2L 5213214..5213332 939..821 565 98.3 Minus
2L 23513712 2L 5213690..5213784 567..473 475 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:15:46 has no hits.

BS07587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:15 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:55 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:32 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 135..1067 3..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:30 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 135..1067 3..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:30 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5213690..5213783 474..567 100 <- Minus
2L 5213214..5213332 821..939 98 <- Minus
2L 5213388..5213640 568..820 100 <- Minus
2L 5213837..5214023 287..473 100 <- Minus
2L 5214317..5214596 3..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:32 Download gff for BS07587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5213214..5213332 821..939 98 <- Minus
arm_2L 5213388..5213640 568..820 100 <- Minus
arm_2L 5213690..5213783 474..567 100 <- Minus
arm_2L 5213837..5214023 287..473 100 <- Minus
arm_2L 5214317..5214596 3..286 98   Minus

BS07587.complete Sequence

1562 bp (1562 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635912

> BS07587.complete
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACCAGTACTTTGTGTTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGGACACCGATATCGGTGGATGT
GTGGAATACGAGACGTTTCCGGTGAAGGGCAAGACCTACGAAGGTCCTCC
ATCGGGTGTGGTGCCCTTCCACGGCATCTGCATGTTTGCCGCCCCCTTTT
GTTATCTGTATGACTCGCCGGTGAGTCTATACTATACATTCCGGGCCTTC
TATATCCGGTACTGCCATCGCTTGACCACCATAAACACGCATCCTCAAGG
GATTGTCAGTCTGTGCCTGCTCTTCGAGAAGCTGCTGCAGACATACGAAC
CGCAGTTATGGTCCCATTTCCGAGAGCTTCAGATACAGCCCCTGCGGGTG
GTCTTCAAATGGCTTATGCGAGCGTTTTCCGGACATTTGCCTCCCGATCA
ATTGCTGGTCCTCTGGGATCTGATCCTTGGCTTTGATAGCTTGGAGATCC
TTCCTCTATTCGCCATCATCATTCTTAGCTTTCGAAAGGAGAGCATCATG
CAGGTGGCCTCGTTGGATAGCATCGAAGCGATTCTGGCAGACTTGTCCTC
TATCAAGGTGCTGCCCCTAGTGCAACTAGCCCTAAGTCGAGACTAAAAGC
TTTCTAGACCAT

BS07587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1530 CG7742-PC 1..1530 17..1546 7650 100 Plus
CG7742-RD 1530 CG7742-PD 1..1530 17..1546 7650 100 Plus
CG7742-RA 1530 CG7742-PA 1..1530 17..1546 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-RC 1894 CG7742-RC 266..1803 12..1549 7675 99.9 Plus
CG7742-RD 2119 CG7742-RD 491..2028 12..1549 7675 99.9 Plus
CG7742-RA 1768 CG7742-RA 140..1677 12..1549 7675 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5212863..5213332 1290..821 2350 100 Minus
2L 23513712 2L 5214317..5214591 286..12 1360 99.6 Minus
2L 23513712 2L 5213387..5213640 821..568 1270 100 Minus
2L 23513712 2L 5213837..5214024 473..286 940 100 Minus
2L 23513712 2L 5212486..5212663 1549..1372 890 100 Minus
2L 23513712 2L 5213690..5213784 567..473 475 100 Minus
2L 23513712 2L 5212715..5212796 1372..1291 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:35:51 has no hits.

BS07587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:28 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:30 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 82..1624 3..1549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:15 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 145..1672 17..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:28 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 82..1624 3..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:57 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
CG7742-RA 145..1672 17..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:57 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5214317..5214586 17..286 100   Minus
2L 5213388..5213640 568..820 100 <- Minus
2L 5213690..5213783 474..567 100 <- Minus
2L 5213837..5214023 287..473 100 <- Minus
2L 5212491..5212662 1373..1544 100 <- Minus
2L 5212715..5212796 1291..1372 100 <- Minus
2L 5212863..5213332 821..1290 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:15 Download gff for BS07587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5212491..5212662 1373..1544 100 <- Minus
arm_2L 5212715..5212796 1291..1372 100 <- Minus
arm_2L 5212863..5213332 821..1290 100 <- Minus
arm_2L 5213388..5213640 568..820 100 <- Minus
arm_2L 5213690..5213783 474..567 100 <- Minus
arm_2L 5213837..5214023 287..473 100 <- Minus
arm_2L 5214317..5214586 17..286 100   Minus

BS07587.pep Sequence

Translation from 16 to 1545

> BS07587.pep
MEELQDASIHHMTAKVIAAIKNTKSYEPIYKELQKLVCNPSVDTHDMRNT
LEDAIKSAGLETEIRNIVYNLVRTRLSKTDDKNLANKQGAKPTVSDPLGY
LKRAGVLWDRRVRKSLNAMCTELKVPLHGQPRISADREDFMAKWNELSNY
NMDLANYRPVYAPKDLLEVLLSLKGPAKTTENTDQIPQWEFSHIALPVKN
LFELRAHYADLLRSDSYLGVPDLTVQCQRILEARHAPMCQQFLKKGCTPA
PYRGALWASVLDSKLHDYDIEYWQKLRNAVWTTDHIVDKLVFKDIQLTAS
NDDQYFVFEDVLYQVLLCFSRDTDIGGCVEYETFPVKGKTYEGPPSGVVP
FHGICMFAAPFCYLYDSPVSLYYTFRAFYIRYCHRLTTINTHPQGIVSLC
LLFEKLLQTYEPQLWSHFRELQIQPLRVVFKWLMRAFSGHLPPDQLLVLW
DLILGFDSLEILPLFAIIILSFRKESIMQVASLDSIEAILADLSSIKVLP
LVQLALSRD*

BS07587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7742-PC 509 CG7742-PC 1..509 1..509 2682 100 Plus
CG7742-PD 509 CG7742-PD 1..509 1..509 2682 100 Plus
CG7742-PA 509 CG7742-PA 1..509 1..509 2682 100 Plus
CG7742-PB 441 CG7742-PB 1..441 67..509 2232 95.9 Plus