Clone Sequence Records
BS07587.3prime Sequence
924 bp (817 high quality bases) assembled on 2006-01-06
> BS07587.3prime
ATGGTCTAGAAAGCTTTTAGTCTCGACTTAGGGCTAGTTGCACTAGGGGC
AGCACCTTGATAGAGGACAAGTCTGCCAGAATCGCTTCGATGCTATCCAA
CGAGGCCACCTGCATGATGCTCTCCTTTCGAAAGCTAAGAATGATGATGG
CGAATAGAGGAAGGATCTCCAAGCTATCAAAGCCAAGGATCAGATCCCAG
AGGACCAGCAATTGATCGGGAGGCAAATGTCCGGAAAACGCTCGCATAAG
CCATTTGAAGACCACCCGCAGGGGCTGTATCTGAAGCTCTCGGAAATGGG
ACCATAACTGCGGTTCGTATGTCTGCAGCAGCTTCTCGAAGAGCAGGCAC
AGACTGACAATCCCTTGAGGATGCGTGTTTATGGTGGTCAAGCGATGGCA
GTACCGGATATAGAAGGCCCGGAATGTATAGTATAGACTCACCGGCGAGT
CATACAGATAACAAAAGGGGGCGGCAAACATGCAGATGCCGTGGAAGGGC
ACCACACCCGATGGAGGACCTTCGTAGGTCTTGCCCTTCACCGGAAACGT
CTCGTATTCCACACATCCACCGATATCGGTGTCCCGAGAAAAGCAGAGCA
GCACCTGGTAGAGCACGTCCTCGAACACAAAGTACTGGTCGTCGTTGGAG
GCCGTCAACTGAATGTCCTTGAAGACCAGTTTGTCAACGATGTGATCCGT
AGTCCAAACGGCATTGCGCAGCTTTTGCCAGTACTCAATATCGTAGTCAT
GTAGCTTGCTGTCCAGCACCGAAGCCCAGAGAGCTCCCCTATAAGGTGCG
GGTGTGCAGCCCTTCTTCAGAAACTGCTGGCACATGGGCGCATGCCTGGC
CTCCAGAATCCTCTGGCACTGAACCGTAAGATCCGGCACTCCCAAATAGC
TATCACTTCGCAGCAGATCCGCGT
BS07587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PA | 1530 | CG7742-RA | 623..1530 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 893..1803 | 924..14 | 4555 | 100 | Minus |
CG7742-RB | 1429 | CG7742-RB | 428..1338 | 924..14 | 4555 | 100 | Minus |
CG7742-RD | 2119 | CG7742-RD | 1118..2028 | 924..14 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5212863..5213332 | 273..742 | 2350 | 100 | Plus |
2L | 23513712 | 2L | 5213387..5213569 | 742..924 | 915 | 100 | Plus |
2L | 23513712 | 2L | 5212486..5212663 | 14..191 | 890 | 100 | Plus |
2L | 23513712 | 2L | 5212715..5212796 | 191..272 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:05:01 has no hits.
BS07587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:14 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 623..1530 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:54 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 623..1530 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:51:57 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 767..1677 | 14..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:18 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RD | 1118..2028 | 14..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:18 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5212486..5212662 | 14..190 | 100 | <- | Plus |
2L | 5212715..5212796 | 191..272 | 100 | <- | Plus |
2L | 5212863..5213332 | 273..742 | 100 | <- | Plus |
2L | 5213388..5213569 | 743..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:51:57 Download gff for
BS07587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5212486..5212662 | 14..190 | 100 | <- | Plus |
arm_2L | 5212715..5212796 | 191..272 | 100 | <- | Plus |
arm_2L | 5212863..5213332 | 273..742 | 100 | <- | Plus |
arm_2L | 5213388..5213569 | 743..924 | 100 | | Plus |
BS07587.5prime Sequence
939 bp (832 high quality bases) assembled on 2006-01-06
> BS07587.5prime
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCCTCAACGACGACCAGTACTTTGTGTT
BS07587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PA | 1530 | CG7742-RA | 1..923 | 17..939 | 4565 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 266..1193 | 12..939 | 4595 | 99.7 | Plus |
CG7742-RD | 2119 | CG7742-RD | 491..1418 | 12..939 | 4595 | 99.7 | Plus |
CG7742-RA | 1768 | CG7742-RA | 140..1067 | 12..939 | 4595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5214317..5214591 | 286..12 | 1360 | 99.6 | Minus |
2L | 23513712 | 2L | 5213387..5213640 | 821..568 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 5213837..5214024 | 473..286 | 940 | 100 | Minus |
2L | 23513712 | 2L | 5213214..5213332 | 939..821 | 565 | 98.3 | Minus |
2L | 23513712 | 2L | 5213690..5213784 | 567..473 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:15:46 has no hits.
BS07587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:15 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:08:55 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:32 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 135..1067 | 3..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:30 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 135..1067 | 3..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:30 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
2L | 5213214..5213332 | 821..939 | 98 | <- | Minus |
2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
2L | 5214317..5214596 | 3..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:32 Download gff for
BS07587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5213214..5213332 | 821..939 | 98 | <- | Minus |
arm_2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
arm_2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
arm_2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
arm_2L | 5214317..5214596 | 3..286 | 98 | | Minus |
BS07587.complete Sequence
1562 bp (1562 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635912
> BS07587.complete
GAAGTTATCAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATA
TGACCGCAAAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCC
ATCTACAAGGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCA
CGATATGCGCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGA
CGGAGATCCGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAA
ACAGATGACAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAG
TGATCCACTTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGG
TTAGGAAGAGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCAT
GGACAACCAAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAA
CGAACTGAGCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACG
CTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAA
ACCACTGAAAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGC
ACTACCTGTGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGC
TGCGAAGTGATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAG
AGGATTCTGGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAA
GGGCTGCACACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGG
ACAGCAAGCTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAAT
GCCGTTTGGACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACAT
TCAGTTGACGGCCTCCAACGACGACCAGTACTTTGTGTTCGAGGACGTGC
TCTACCAGGTGCTGCTCTGCTTTTCTCGGGACACCGATATCGGTGGATGT
GTGGAATACGAGACGTTTCCGGTGAAGGGCAAGACCTACGAAGGTCCTCC
ATCGGGTGTGGTGCCCTTCCACGGCATCTGCATGTTTGCCGCCCCCTTTT
GTTATCTGTATGACTCGCCGGTGAGTCTATACTATACATTCCGGGCCTTC
TATATCCGGTACTGCCATCGCTTGACCACCATAAACACGCATCCTCAAGG
GATTGTCAGTCTGTGCCTGCTCTTCGAGAAGCTGCTGCAGACATACGAAC
CGCAGTTATGGTCCCATTTCCGAGAGCTTCAGATACAGCCCCTGCGGGTG
GTCTTCAAATGGCTTATGCGAGCGTTTTCCGGACATTTGCCTCCCGATCA
ATTGCTGGTCCTCTGGGATCTGATCCTTGGCTTTGATAGCTTGGAGATCC
TTCCTCTATTCGCCATCATCATTCTTAGCTTTCGAAAGGAGAGCATCATG
CAGGTGGCCTCGTTGGATAGCATCGAAGCGATTCTGGCAGACTTGTCCTC
TATCAAGGTGCTGCCCCTAGTGCAACTAGCCCTAAGTCGAGACTAAAAGC
TTTCTAGACCAT
BS07587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1530 | CG7742-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
CG7742-RD | 1530 | CG7742-PD | 1..1530 | 17..1546 | 7650 | 100 | Plus |
CG7742-RA | 1530 | CG7742-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-RC | 1894 | CG7742-RC | 266..1803 | 12..1549 | 7675 | 99.9 | Plus |
CG7742-RD | 2119 | CG7742-RD | 491..2028 | 12..1549 | 7675 | 99.9 | Plus |
CG7742-RA | 1768 | CG7742-RA | 140..1677 | 12..1549 | 7675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5212863..5213332 | 1290..821 | 2350 | 100 | Minus |
2L | 23513712 | 2L | 5214317..5214591 | 286..12 | 1360 | 99.6 | Minus |
2L | 23513712 | 2L | 5213387..5213640 | 821..568 | 1270 | 100 | Minus |
2L | 23513712 | 2L | 5213837..5214024 | 473..286 | 940 | 100 | Minus |
2L | 23513712 | 2L | 5212486..5212663 | 1549..1372 | 890 | 100 | Minus |
2L | 23513712 | 2L | 5213690..5213784 | 567..473 | 475 | 100 | Minus |
2L | 23513712 | 2L | 5212715..5212796 | 1372..1291 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:35:51 has no hits.
BS07587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:28 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 1..1530 | 17..1546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:30 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 82..1624 | 3..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:15 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 145..1672 | 17..1544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:28 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 82..1624 | 3..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:57 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7742-RA | 145..1672 | 17..1544 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:57 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5214317..5214586 | 17..286 | 100 | | Minus |
2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
2L | 5212491..5212662 | 1373..1544 | 100 | <- | Minus |
2L | 5212715..5212796 | 1291..1372 | 100 | <- | Minus |
2L | 5212863..5213332 | 821..1290 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:15 Download gff for
BS07587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5212491..5212662 | 1373..1544 | 100 | <- | Minus |
arm_2L | 5212715..5212796 | 1291..1372 | 100 | <- | Minus |
arm_2L | 5212863..5213332 | 821..1290 | 100 | <- | Minus |
arm_2L | 5213388..5213640 | 568..820 | 100 | <- | Minus |
arm_2L | 5213690..5213783 | 474..567 | 100 | <- | Minus |
arm_2L | 5213837..5214023 | 287..473 | 100 | <- | Minus |
arm_2L | 5214317..5214586 | 17..286 | 100 | | Minus |
BS07587.pep Sequence
Translation from 16 to 1545
> BS07587.pep
MEELQDASIHHMTAKVIAAIKNTKSYEPIYKELQKLVCNPSVDTHDMRNT
LEDAIKSAGLETEIRNIVYNLVRTRLSKTDDKNLANKQGAKPTVSDPLGY
LKRAGVLWDRRVRKSLNAMCTELKVPLHGQPRISADREDFMAKWNELSNY
NMDLANYRPVYAPKDLLEVLLSLKGPAKTTENTDQIPQWEFSHIALPVKN
LFELRAHYADLLRSDSYLGVPDLTVQCQRILEARHAPMCQQFLKKGCTPA
PYRGALWASVLDSKLHDYDIEYWQKLRNAVWTTDHIVDKLVFKDIQLTAS
NDDQYFVFEDVLYQVLLCFSRDTDIGGCVEYETFPVKGKTYEGPPSGVVP
FHGICMFAAPFCYLYDSPVSLYYTFRAFYIRYCHRLTTINTHPQGIVSLC
LLFEKLLQTYEPQLWSHFRELQIQPLRVVFKWLMRAFSGHLPPDQLLVLW
DLILGFDSLEILPLFAIIILSFRKESIMQVASLDSIEAILADLSSIKVLP
LVQLALSRD*
BS07587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7742-PC | 509 | CG7742-PC | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PD | 509 | CG7742-PD | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PA | 509 | CG7742-PA | 1..509 | 1..509 | 2682 | 100 | Plus |
CG7742-PB | 441 | CG7742-PB | 1..441 | 67..509 | 2232 | 95.9 | Plus |