Clone Sequence Records
BS07595.3prime Sequence
914 bp (787 high quality bases) assembled on 2006-01-06
> BS07595.3prime
ATGGTCTAGAAAGCTTTTATTCAGCTTTAAGTTCGAGCTGCTGTACGAGG
CCCAGGACCTTTCGCCTCTGCAGTTTATCATTGGGTGTTTTTGGCAGACT
GTCGATGAAATACACACCTCCTCGAATGTGGTAGGCTCCGCTCAAGTGGT
GTTCCACAATGTTTCGGATGTGATCCGCCGTAAGGCGTTCCCCCTCCGGA
CTTTTGGTGCGGACCACGGCGCAGGCCGTAAGATTGGTGCTCACCGCGTC
GGGTATGCCGAAGACACAGGCCTCACTGACGCCGGGCAATCTGAGGATGA
ACTCCTCGATCTGCTCGGGATAGATCTGGAAGTTGTTGAACTTGAAGACA
TCGGTGTCACGGGTCTGGATGTACAGATACCCCTCGCTGTCAAGGTAACC
GATGTCTCCCGTGCGAAACCACATGCCGTCGGAGCTGAGGGCTCTTCGAG
TGGCCTCCGGGTTTCGGTAGTAGCCTGCCCACTTGAACCGCAAACGGGCG
TAGATGATGCCCACTTCATTGATGCCAAGTGGCATCTTCAGTTTGTCCAG
CACCCGCAGCTCAACATTCCGCATAACCTTGCCCTCGCAACCCACTGGTC
CACCCACGTTTTTGCTCAGTCCGCCCATCTCGGACAGCCCATAGCCCACA
ACAAATCTCTGGTTACCAATCAACTCGTACATCCTGCGACACACCGCCTT
GCACACTTTAGATCCAGCTCCAATCAAAACCCGTATGGATTGGAGCTGGG
CCTTCAGTTCCATCACATCACTGTCATGCTTGGATAGCAGGGCAATCTGA
TGGGAGGCCAGGAACAGAAAGGTCACCTTGTGCCTCGCCACCAGTTGGAG
CAGGTACTCCACGCTGTATGGACGATTGGTGATTATGCGACGACAACCAT
TGAGGAGCGAGGCC
BS07595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-PA | 1638 | CG17999-RA | 741..1638 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-RA | 1691 | CG17999-RA | 777..1676 | 914..15 | 4500 | 100 | Minus |
CG9993-RA | 1802 | CG9993-RA | 1297..1516 | 432..213 | 305 | 77 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20847995..20848894 | 15..914 | 4500 | 100 | Plus |
2R | 25286936 | 2R | 20850432..20850651 | 213..432 | 290 | 75.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:49:40 has no hits.
BS07595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:27 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-PA | 741..1638 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:10 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-PA | 741..1638 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:44 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 777..1676 | 15..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:38 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 777..1676 | 15..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:38 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20847995..20848894 | 15..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:44 Download gff for
BS07595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16735500..16736399 | 15..914 | 100 | | Plus |
BS07595.5prime Sequence
922 bp (807 high quality bases) assembled on 2006-01-06
> BS07595.5prime
GAAGTTATCAGTCGACATGAGCTGTGAGGTGCACTACGATGCCGCTTCGC
GGACTTGGTTTGGACCGCGTGGCAAGGACTTCTACGGTCCAGAAATGACC
CTGGGCGAGGTCATCATGCGCGTGCTGCAGATTAACGCAGATCAGGTGAT
GCAAATATGTGATACCACGGGTCAGGAGCTCACCGGTGCTCAGTTGGCTC
AGCAGAGTGCCCGCATAGCACAGGCCTTCAAGAGATTGGGTCTACGGAGG
GGCGATGTCGTTGGCATATCGGCCAATAACTCGACGTATTTAACCAGTGT
GATAATTGCGGCTTTGCTCCGTGGCATCCCCATTAATCCACTGCATCCGG
AGTTTACTGAAGAGACTGTCAAATACATGTACGACATTACCGAGCCGAAG
GTTATCTTCTGCGATGTAGAAAACTACCATATAATAAAGACGGTCAATGG
AAAACTACAAAATCCCGCCAAGATCTATCTGGTCAATGGAAAATTAGAAG
GAGTGCTGGACATAAGCGAGATGCTAAATGATGAAGACAGCATTACAGCA
GCCGCGTATGTTCCTTGTCCAAAACTACACGGCGATCACACCGCATTCAT
TGTGTGCTCCTCGGGAACCACGGGAATGCCAAAAGGCGTCACTCGATCCC
ATCGAAGTTTACTCTGTAACTGCAAGAATCCGAACACCTACACCCGAGAT
AGCGTGCTGCTCTCGTTCAGTCCCCTCTACTGGATATCGGGAACCATAAT
CCTTCTGGCCTCGCTCCTCAATGGTTGTCGTCGCATAATCACCAATCGTC
CATACAGCGTGGAGTACCTGCTCCAACTGGTGGCGAGGCACAAGGTGACC
TTTCTGTTCCTGGCCTCCATCAGATTGCCCTGCTATCCCAGCATGACAGT
GATGTGATGGGACTGAAGGCCC
BS07595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-PA | 1638 | CG17999-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG17999-PA | 1638 | CG17999-RA | 852..907 | 867..922 | 230 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-RA | 1691 | CG17999-RA | 37..943 | 17..922 | 4480 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20849558..20849903 | 362..17 | 1730 | 100 | Minus |
2R | 25286936 | 2R | 20848728..20848972 | 922..679 | 1145 | 98.8 | Minus |
2R | 25286936 | 2R | 20849289..20849490 | 562..361 | 995 | 99.5 | Minus |
2R | 25286936 | 2R | 20849111..20849233 | 678..556 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:51:48 has no hits.
BS07595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:28 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:12 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:08 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 37..943 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:31 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 37..943 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:31 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20848728..20848972 | 679..922 | 98 | <- | Minus |
2R | 20849111..20849233 | 556..678 | 100 | <- | Minus |
2R | 20849296..20849488 | 363..555 | 100 | <- | Minus |
2R | 20849558..20849903 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:08 Download gff for
BS07595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16736233..16736477 | 679..922 | 98 | <- | Minus |
arm_2R | 16736616..16736738 | 556..678 | 100 | <- | Minus |
arm_2R | 16736801..16736993 | 363..555 | 100 | <- | Minus |
arm_2R | 16737063..16737408 | 17..362 | 100 | | Minus |
BS07595.complete Sequence
1670 bp (1670 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635913
> BS07595.complete
GAAGTTATCAGTCGACATGAGCTGTGAGGTGCACTACGATGCCGCTTCGC
GGACTTGGTTTGGACCGCGTGGCAAGGACTTCTACGGTCCAGAAATGACC
CTGGGCGAGGTCATCATGCGCGTGCTGCAGATTAACGCAGATCAGGTGAT
GCAAATATGTGATACCACGGGTCAGGAGCTCACCGGTGCTCAGTTGGCTC
AGCAGAGTGCCCGCATAGCACAGGCCTTCAAGAGATTGGGTCTACGGAGG
GGCGATGTCGTTGGCATATCGGCCAATAACTCGACGTATTTAACCAGTGT
GATAATTGCGGCTTTGCTCCGTGGCATCCCCATTAATCCACTGCATCCGG
AGTTTACTGAAGAGACTGTCAAATACATGTACGACATTACCGAGCCGAAG
GTTATCTTCTGCGATGTAGAAAACTACCATATAATAAAGACGGTCAATGG
AAAACTACAAAATCCCGCCAAGATCTATCTGGTCAATGGAAAATTAGAAG
GAGTGCTGGACATAAGCGAGATGCTAAATGATGAAGACAGCATTACAGCA
GCCGCGTATGTTCCTTGTCCAAAACTACACGGCGATCACACCGCATTCAT
TGTGTGCTCCTCGGGAACCACGGGAATGCCAAAAGGCGTCACTCGATCCC
ATCGAAGTTTACTCTGTAACTGCAAGAATCCGAACACCTACACCCGAGAT
AGCGTGCTGCTCTCGTTCAGTCCCCTCTACTGGATATCGGGAACCATAAT
CCTTCTGGCCTCGCTCCTCAATGGTTGTCGTCGCATAATCACCAATCGTC
CATACAGCGTGGAGTACCTGCTCCAACTGGTGGCGAGGCACAAGGTGACC
TTTCTGTTCCTGGCCTCCCATCAGATTGCCCTGCTATCCAAGCATGACAG
TGATGTGATGGAACTGAAGGCCCAGCTCCAATCCATACGGGTTTTGATTG
GAGCTGGATCTAAAGTGTGCAAGGCGGTGTGTCGCAGGATGTACGAGTTG
ATTGGTAACCAGAGATTTGTTGTGGGCTATGGGCTGTCCGAGATGGGCGG
ACTGAGCAAAAACGTGGGTGGACCAGTGGGTTGCGAGGGCAAGGTTATGC
GGAATGTTGAGCTGCGGGTGCTGGACAAACTGAAGATGCCACTTGGCATC
AATGAAGTGGGCATCATCTACGCCCGTTTGCGGTTCAAGTGGGCAGGCTA
CTACCGAAACCCGGAGGCCACTCGAAGAGCCCTCAGCTCCGACGGCATGT
GGTTTCGCACGGGAGACATCGGTTACCTTGACAGCGAGGGGTATCTGTAC
ATCCAGACCCGTGACACCGATGTCTTCAAGTTCAACAACTTCCAGATCTA
TCCCGAGCAGATCGAGGAGTTCATCCTCAGATTGCCCGGCGTCAGTGAGG
CCTGTGTCTTCGGCATACCCGACGCGGTGAGCACCAATCTTACGGCCTGC
GCCGTGGTCCGCACCAAAAGTCCGGAGGGGGAACGCCTTACGGCGGATCA
CATCCGAAACATTGTGGAACACCACTTGAGCGGAGCCTACCACATTCGAG
GAGGTGTGTATTTCATCGACAGTCTGCCAAAAACACCCAATGATAAACTG
CAGAGGCGAAAGGTCCTGGGCCTCGTACAGCAGCTCGAACTTAAAGCTGA
ATAAAAGCTTTCTAGACCAT
BS07595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-RA | 1638 | CG17999-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
CG9993-RA | 1632 | CG9993-PA | 1220..1439 | 1239..1458 | 290 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-RA | 1691 | CG17999-RA | 37..1676 | 17..1656 | 8200 | 100 | Plus |
CG9993-RA | 1802 | CG9993-RA | 1297..1516 | 1239..1458 | 290 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20847995..20848972 | 1656..679 | 4890 | 100 | Minus |
2R | 25286936 | 2R | 20849558..20849903 | 362..17 | 1730 | 100 | Minus |
2R | 25286936 | 2R | 20849289..20849490 | 562..361 | 995 | 99.5 | Minus |
2R | 25286936 | 2R | 20849111..20849233 | 678..556 | 615 | 100 | Minus |
2R | 25286936 | 2R | 20850432..20850651 | 1458..1239 | 290 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:50:46 has no hits.
BS07595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:12 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:09 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 17..1656 | 17..1656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:28 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 37..1672 | 17..1652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:12 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 17..1656 | 17..1656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:58 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17999-RA | 37..1672 | 17..1652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:58 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20849296..20849488 | 363..555 | 100 | <- | Minus |
2R | 20849111..20849233 | 556..678 | 100 | <- | Minus |
2R | 20847999..20848972 | 679..1652 | 100 | <- | Minus |
2R | 20849558..20849903 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:28 Download gff for
BS07595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16737063..16737408 | 17..362 | 100 | | Minus |
arm_2R | 16735504..16736477 | 679..1652 | 100 | <- | Minus |
arm_2R | 16736616..16736738 | 556..678 | 100 | <- | Minus |
arm_2R | 16736801..16736993 | 363..555 | 100 | <- | Minus |
BS07595.pep Sequence
Translation from 16 to 1653
> BS07595.pep
MSCEVHYDAASRTWFGPRGKDFYGPEMTLGEVIMRVLQINADQVMQICDT
TGQELTGAQLAQQSARIAQAFKRLGLRRGDVVGISANNSTYLTSVIIAAL
LRGIPINPLHPEFTEETVKYMYDITEPKVIFCDVENYHIIKTVNGKLQNP
AKIYLVNGKLEGVLDISEMLNDEDSITAAAYVPCPKLHGDHTAFIVCSSG
TTGMPKGVTRSHRSLLCNCKNPNTYTRDSVLLSFSPLYWISGTIILLASL
LNGCRRIITNRPYSVEYLLQLVARHKVTFLFLASHQIALLSKHDSDVMEL
KAQLQSIRVLIGAGSKVCKAVCRRMYELIGNQRFVVGYGLSEMGGLSKNV
GGPVGCEGKVMRNVELRVLDKLKMPLGINEVGIIYARLRFKWAGYYRNPE
ATRRALSSDGMWFRTGDIGYLDSEGYLYIQTRDTDVFKFNNFQIYPEQIE
EFILRLPGVSEACVFGIPDAVSTNLTACAVVRTKSPEGERLTADHIRNIV
EHHLSGAYHIRGGVYFIDSLPKTPNDKLQRRKVLGLVQQLELKAE*
BS07595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17999-PA | 545 | CG17999-PA | 1..545 | 1..545 | 2835 | 100 | Plus |
CG9993-PA | 543 | CG9993-PA | 6..532 | 7..533 | 1550 | 55.9 | Plus |
CG11453-PA | 539 | CG11453-PA | 8..522 | 7..532 | 785 | 35 | Plus |
CG4830-PA | 534 | CG4830-PA | 8..533 | 7..543 | 700 | 32.2 | Plus |
CG8834-PA | 535 | CG8834-PA | 8..521 | 7..531 | 699 | 33.5 | Plus |