Clone BS07595 Report

Search the DGRC for BS07595

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:75
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG17999-RA
Protein status:BS07595.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07595.3prime Sequence

914 bp (787 high quality bases) assembled on 2006-01-06

> BS07595.3prime
ATGGTCTAGAAAGCTTTTATTCAGCTTTAAGTTCGAGCTGCTGTACGAGG
CCCAGGACCTTTCGCCTCTGCAGTTTATCATTGGGTGTTTTTGGCAGACT
GTCGATGAAATACACACCTCCTCGAATGTGGTAGGCTCCGCTCAAGTGGT
GTTCCACAATGTTTCGGATGTGATCCGCCGTAAGGCGTTCCCCCTCCGGA
CTTTTGGTGCGGACCACGGCGCAGGCCGTAAGATTGGTGCTCACCGCGTC
GGGTATGCCGAAGACACAGGCCTCACTGACGCCGGGCAATCTGAGGATGA
ACTCCTCGATCTGCTCGGGATAGATCTGGAAGTTGTTGAACTTGAAGACA
TCGGTGTCACGGGTCTGGATGTACAGATACCCCTCGCTGTCAAGGTAACC
GATGTCTCCCGTGCGAAACCACATGCCGTCGGAGCTGAGGGCTCTTCGAG
TGGCCTCCGGGTTTCGGTAGTAGCCTGCCCACTTGAACCGCAAACGGGCG
TAGATGATGCCCACTTCATTGATGCCAAGTGGCATCTTCAGTTTGTCCAG
CACCCGCAGCTCAACATTCCGCATAACCTTGCCCTCGCAACCCACTGGTC
CACCCACGTTTTTGCTCAGTCCGCCCATCTCGGACAGCCCATAGCCCACA
ACAAATCTCTGGTTACCAATCAACTCGTACATCCTGCGACACACCGCCTT
GCACACTTTAGATCCAGCTCCAATCAAAACCCGTATGGATTGGAGCTGGG
CCTTCAGTTCCATCACATCACTGTCATGCTTGGATAGCAGGGCAATCTGA
TGGGAGGCCAGGAACAGAAAGGTCACCTTGTGCCTCGCCACCAGTTGGAG
CAGGTACTCCACGCTGTATGGACGATTGGTGATTATGCGACGACAACCAT
TGAGGAGCGAGGCC

BS07595.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-PA 1638 CG17999-RA 741..1638 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-RA 1691 CG17999-RA 777..1676 914..15 4500 100 Minus
CG9993-RA 1802 CG9993-RA 1297..1516 432..213 305 77 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20847995..20848894 15..914 4500 100 Plus
2R 25286936 2R 20850432..20850651 213..432 290 75.5 Plus
Blast to na_te.dros performed on 2015-02-06 11:49:40 has no hits.

BS07595.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:27 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-PA 741..1638 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:10 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-PA 741..1638 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:38:44 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 777..1676 15..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:38 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 777..1676 15..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:38 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20847995..20848894 15..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:38:44 Download gff for BS07595.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16735500..16736399 15..914 100   Plus

BS07595.5prime Sequence

922 bp (807 high quality bases) assembled on 2006-01-06

> BS07595.5prime
GAAGTTATCAGTCGACATGAGCTGTGAGGTGCACTACGATGCCGCTTCGC
GGACTTGGTTTGGACCGCGTGGCAAGGACTTCTACGGTCCAGAAATGACC
CTGGGCGAGGTCATCATGCGCGTGCTGCAGATTAACGCAGATCAGGTGAT
GCAAATATGTGATACCACGGGTCAGGAGCTCACCGGTGCTCAGTTGGCTC
AGCAGAGTGCCCGCATAGCACAGGCCTTCAAGAGATTGGGTCTACGGAGG
GGCGATGTCGTTGGCATATCGGCCAATAACTCGACGTATTTAACCAGTGT
GATAATTGCGGCTTTGCTCCGTGGCATCCCCATTAATCCACTGCATCCGG
AGTTTACTGAAGAGACTGTCAAATACATGTACGACATTACCGAGCCGAAG
GTTATCTTCTGCGATGTAGAAAACTACCATATAATAAAGACGGTCAATGG
AAAACTACAAAATCCCGCCAAGATCTATCTGGTCAATGGAAAATTAGAAG
GAGTGCTGGACATAAGCGAGATGCTAAATGATGAAGACAGCATTACAGCA
GCCGCGTATGTTCCTTGTCCAAAACTACACGGCGATCACACCGCATTCAT
TGTGTGCTCCTCGGGAACCACGGGAATGCCAAAAGGCGTCACTCGATCCC
ATCGAAGTTTACTCTGTAACTGCAAGAATCCGAACACCTACACCCGAGAT
AGCGTGCTGCTCTCGTTCAGTCCCCTCTACTGGATATCGGGAACCATAAT
CCTTCTGGCCTCGCTCCTCAATGGTTGTCGTCGCATAATCACCAATCGTC
CATACAGCGTGGAGTACCTGCTCCAACTGGTGGCGAGGCACAAGGTGACC
TTTCTGTTCCTGGCCTCCATCAGATTGCCCTGCTATCCCAGCATGACAGT
GATGTGATGGGACTGAAGGCCC

BS07595.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-PA 1638 CG17999-RA 1..852 17..868 4260 100 Plus
CG17999-PA 1638 CG17999-RA 852..907 867..922 230 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-RA 1691 CG17999-RA 37..943 17..922 4480 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20849558..20849903 362..17 1730 100 Minus
2R 25286936 2R 20848728..20848972 922..679 1145 98.8 Minus
2R 25286936 2R 20849289..20849490 562..361 995 99.5 Minus
2R 25286936 2R 20849111..20849233 678..556 615 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:51:48 has no hits.

BS07595.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:28 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-PA 1..907 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:12 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-PA 1..907 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:08 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 37..943 17..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:31 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 37..943 17..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:31 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20848728..20848972 679..922 98 <- Minus
2R 20849111..20849233 556..678 100 <- Minus
2R 20849296..20849488 363..555 100 <- Minus
2R 20849558..20849903 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:08 Download gff for BS07595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16736233..16736477 679..922 98 <- Minus
arm_2R 16736616..16736738 556..678 100 <- Minus
arm_2R 16736801..16736993 363..555 100 <- Minus
arm_2R 16737063..16737408 17..362 100   Minus

BS07595.complete Sequence

1670 bp (1670 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635913

> BS07595.complete
GAAGTTATCAGTCGACATGAGCTGTGAGGTGCACTACGATGCCGCTTCGC
GGACTTGGTTTGGACCGCGTGGCAAGGACTTCTACGGTCCAGAAATGACC
CTGGGCGAGGTCATCATGCGCGTGCTGCAGATTAACGCAGATCAGGTGAT
GCAAATATGTGATACCACGGGTCAGGAGCTCACCGGTGCTCAGTTGGCTC
AGCAGAGTGCCCGCATAGCACAGGCCTTCAAGAGATTGGGTCTACGGAGG
GGCGATGTCGTTGGCATATCGGCCAATAACTCGACGTATTTAACCAGTGT
GATAATTGCGGCTTTGCTCCGTGGCATCCCCATTAATCCACTGCATCCGG
AGTTTACTGAAGAGACTGTCAAATACATGTACGACATTACCGAGCCGAAG
GTTATCTTCTGCGATGTAGAAAACTACCATATAATAAAGACGGTCAATGG
AAAACTACAAAATCCCGCCAAGATCTATCTGGTCAATGGAAAATTAGAAG
GAGTGCTGGACATAAGCGAGATGCTAAATGATGAAGACAGCATTACAGCA
GCCGCGTATGTTCCTTGTCCAAAACTACACGGCGATCACACCGCATTCAT
TGTGTGCTCCTCGGGAACCACGGGAATGCCAAAAGGCGTCACTCGATCCC
ATCGAAGTTTACTCTGTAACTGCAAGAATCCGAACACCTACACCCGAGAT
AGCGTGCTGCTCTCGTTCAGTCCCCTCTACTGGATATCGGGAACCATAAT
CCTTCTGGCCTCGCTCCTCAATGGTTGTCGTCGCATAATCACCAATCGTC
CATACAGCGTGGAGTACCTGCTCCAACTGGTGGCGAGGCACAAGGTGACC
TTTCTGTTCCTGGCCTCCCATCAGATTGCCCTGCTATCCAAGCATGACAG
TGATGTGATGGAACTGAAGGCCCAGCTCCAATCCATACGGGTTTTGATTG
GAGCTGGATCTAAAGTGTGCAAGGCGGTGTGTCGCAGGATGTACGAGTTG
ATTGGTAACCAGAGATTTGTTGTGGGCTATGGGCTGTCCGAGATGGGCGG
ACTGAGCAAAAACGTGGGTGGACCAGTGGGTTGCGAGGGCAAGGTTATGC
GGAATGTTGAGCTGCGGGTGCTGGACAAACTGAAGATGCCACTTGGCATC
AATGAAGTGGGCATCATCTACGCCCGTTTGCGGTTCAAGTGGGCAGGCTA
CTACCGAAACCCGGAGGCCACTCGAAGAGCCCTCAGCTCCGACGGCATGT
GGTTTCGCACGGGAGACATCGGTTACCTTGACAGCGAGGGGTATCTGTAC
ATCCAGACCCGTGACACCGATGTCTTCAAGTTCAACAACTTCCAGATCTA
TCCCGAGCAGATCGAGGAGTTCATCCTCAGATTGCCCGGCGTCAGTGAGG
CCTGTGTCTTCGGCATACCCGACGCGGTGAGCACCAATCTTACGGCCTGC
GCCGTGGTCCGCACCAAAAGTCCGGAGGGGGAACGCCTTACGGCGGATCA
CATCCGAAACATTGTGGAACACCACTTGAGCGGAGCCTACCACATTCGAG
GAGGTGTGTATTTCATCGACAGTCTGCCAAAAACACCCAATGATAAACTG
CAGAGGCGAAAGGTCCTGGGCCTCGTACAGCAGCTCGAACTTAAAGCTGA
ATAAAAGCTTTCTAGACCAT

BS07595.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-RA 1638 CG17999-PA 1..1638 17..1654 8190 100 Plus
CG9993-RA 1632 CG9993-PA 1220..1439 1239..1458 290 75.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-RA 1691 CG17999-RA 37..1676 17..1656 8200 100 Plus
CG9993-RA 1802 CG9993-RA 1297..1516 1239..1458 290 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20847995..20848972 1656..679 4890 100 Minus
2R 25286936 2R 20849558..20849903 362..17 1730 100 Minus
2R 25286936 2R 20849289..20849490 562..361 995 99.5 Minus
2R 25286936 2R 20849111..20849233 678..556 615 100 Minus
2R 25286936 2R 20850432..20850651 1458..1239 290 75.5 Minus
Blast to na_te.dros performed on 2014-11-27 12:50:46 has no hits.

BS07595.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:12 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 1..1638 17..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:09 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 17..1656 17..1656 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:28 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 37..1672 17..1652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:12 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 17..1656 17..1656 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:58 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
CG17999-RA 37..1672 17..1652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:58 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20849296..20849488 363..555 100 <- Minus
2R 20849111..20849233 556..678 100 <- Minus
2R 20847999..20848972 679..1652 100 <- Minus
2R 20849558..20849903 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:28 Download gff for BS07595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16737063..16737408 17..362 100   Minus
arm_2R 16735504..16736477 679..1652 100 <- Minus
arm_2R 16736616..16736738 556..678 100 <- Minus
arm_2R 16736801..16736993 363..555 100 <- Minus

BS07595.pep Sequence

Translation from 16 to 1653

> BS07595.pep
MSCEVHYDAASRTWFGPRGKDFYGPEMTLGEVIMRVLQINADQVMQICDT
TGQELTGAQLAQQSARIAQAFKRLGLRRGDVVGISANNSTYLTSVIIAAL
LRGIPINPLHPEFTEETVKYMYDITEPKVIFCDVENYHIIKTVNGKLQNP
AKIYLVNGKLEGVLDISEMLNDEDSITAAAYVPCPKLHGDHTAFIVCSSG
TTGMPKGVTRSHRSLLCNCKNPNTYTRDSVLLSFSPLYWISGTIILLASL
LNGCRRIITNRPYSVEYLLQLVARHKVTFLFLASHQIALLSKHDSDVMEL
KAQLQSIRVLIGAGSKVCKAVCRRMYELIGNQRFVVGYGLSEMGGLSKNV
GGPVGCEGKVMRNVELRVLDKLKMPLGINEVGIIYARLRFKWAGYYRNPE
ATRRALSSDGMWFRTGDIGYLDSEGYLYIQTRDTDVFKFNNFQIYPEQIE
EFILRLPGVSEACVFGIPDAVSTNLTACAVVRTKSPEGERLTADHIRNIV
EHHLSGAYHIRGGVYFIDSLPKTPNDKLQRRKVLGLVQQLELKAE*

BS07595.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17999-PA 545 CG17999-PA 1..545 1..545 2835 100 Plus
CG9993-PA 543 CG9993-PA 6..532 7..533 1550 55.9 Plus
CG11453-PA 539 CG11453-PA 8..522 7..532 785 35 Plus
CG4830-PA 534 CG4830-PA 8..533 7..543 700 32.2 Plus
CG8834-PA 535 CG8834-PA 8..521 7..531 699 33.5 Plus