Clone Sequence Records
BS07601.3prime Sequence
946 bp (846 high quality bases) assembled on 2006-01-06
> BS07601.3prime
ATGGTCTAGAAAGCTTCTAATTAATTGGCTGCGCTCGCGAAATTCCACCT
GCGTCGTGGCCATGGCGAATCAGGGTCTGCTCATCGACCAGATCATCGTC
GTCCTGGTCGTTGTTCTCCAGCTGCTTCTGGCGCTTTAGCCGCAGCTCGA
ATACCTCGCTGATGGCGTCGCGGAAACAGATGAAATTGTAGTCGATGACG
CCCTGCCGGTTGAAGTTCTCCTCGCGCAGGATGCAGACCAGGGCCAGGAA
CTTGTTCACCTCCCGCAGGTAGAGTATCGTGTTGTTGTTTAACTTGATGA
GACTAGAGCTCCCGCTGTCAAAGGCGGTTTCTTCGGAGCTGTATATGCTG
GACAGATCAATGACCACGTCAATCATATCGCAGCAGAGCTCATACGTCTG
CATATCGACTGGTGACGAGTCCGTGGCTATGTAAATTTTGGAAACCACAT
CGAACAGAAAGGCTTTTTCTATTCCGGAGTTTGGTATAAAAATGTTCAGC
AGATTCTCCAGCGTCGGAAGCTGGGGAATCAGCTTCTGCACCACCTTGGA
GAAGGCCTCGAAGATGGAGTGGTCGTATATGGAGGTCAGATGGAAACTCA
GGTGGATCTGATCGAGGCCAGCCTCGTTAAGGTCATCCGACGACCGCTGG
TGTATGTCCCGCTGCGATTCCATTTTCGAGTCGTCGCTAATTCCATCCAC
CTTGTGTATAAACACCTCGAACTTGATGCGCTTGTTCACTTTGTAGGCCT
GCAGCACTGTGTTCTTGAACTTGGTCAGCGCCTCGTTGTAGTCATCCTTG
GCATCGATGACAAAGACCAGGGCTCCACAGCCTCCAAAGATCATGTCAGA
ATCAAAGGTCGGCTCGAAGAAGTCAATCTGGCCGGGGAAGTCCCAGATCT
GGAACTGCACAAAGCTGGAGTTGTTGATGTCGTCCTTCACGATCTT
BS07601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8707-PA | 1158 | CG8707-RA | 229..1158 | 946..17 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagC-D-RA | 1558 | CG8707-RA | 405..1334 | 946..17 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8161903..8162227 | 17..341 | 1625 | 100 | Plus |
2R | 25286936 | 2R | 8162768..8163015 | 699..946 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 8162488..8162708 | 482..702 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 8162286..8162428 | 339..481 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:35 has no hits.
BS07601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:31 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-PA | 229..1158 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:16 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-PA | 229..1158 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:25 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 405..1336 | 13..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:03 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 405..1336 | 13..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:03 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8161899..8162224 | 13..338 | 99 | <- | Plus |
2R | 8162286..8162428 | 339..481 | 100 | <- | Plus |
2R | 8162488..8162706 | 482..700 | 100 | <- | Plus |
2R | 8162770..8163015 | 701..946 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:25 Download gff for
BS07601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4049404..4049729 | 13..338 | 99 | <- | Plus |
arm_2R | 4049791..4049933 | 339..481 | 100 | <- | Plus |
arm_2R | 4049993..4050211 | 482..700 | 100 | <- | Plus |
arm_2R | 4050275..4050520 | 701..946 | 100 | | Plus |
BS07601.5prime Sequence
926 bp (790 high quality bases) assembled on 2006-01-06
> BS07601.5prime
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATAC
AGCTCCGAAGAAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTT
AAAACACAACACGATACTCTACCTGC
BS07601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8707-PA | 1158 | CG8707-RA | 1..910 | 17..926 | 4500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagC-D-RA | 1558 | CG8707-RA | 176..1086 | 16..926 | 4525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8162768..8163241 | 492..19 | 2370 | 100 | Minus |
2R | 25286936 | 2R | 8162488..8162708 | 709..489 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 8162286..8162428 | 852..710 | 715 | 100 | Minus |
2R | 25286936 | 2R | 8162151..8162227 | 926..850 | 355 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:02:46 has no hits.
BS07601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:32 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:17 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:53 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 168..1086 | 8..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:12 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 168..1086 | 8..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:12 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8162488..8162706 | 491..709 | 100 | <- | Minus |
2R | 8162151..8162224 | 853..926 | 97 | <- | Minus |
2R | 8162286..8162428 | 710..852 | 100 | <- | Minus |
2R | 8162770..8163243 | 16..490 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:53 Download gff for
BS07601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4049656..4049729 | 853..926 | 97 | <- | Minus |
arm_2R | 4049791..4049933 | 710..852 | 100 | <- | Minus |
arm_2R | 4049993..4050211 | 491..709 | 100 | <- | Minus |
arm_2R | 4050275..4050748 | 16..490 | 99 | | Minus |
BS07601.complete Sequence
1190 bp (1190 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635914
> BS07601.complete
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATAC
AGCTCCGAAGAAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTT
AAACAACAACACGATACTCTACCTGCGGGAGGTGAACAAGTTCCTGGCCC
TGGTCTGCATCCTGCGCGAGGAGAACTTCAACCGGCAGGGCGTCATCGAC
TACAATTTCATCTGTTTCCGCGACGCCATCAGCGAGGTATTCGAGCTGCG
GCTAAAGCGCCAGAAGCAGCTGGAGAACAACGACCAGGACGACGATGATC
TGGTCGATGAGCAGACCCTGATTCGCCATGGCCACGACGCAGGTGGAATT
TCGCGAGCGCAGCCAATTAATTAGAAGCTTTCTAGACCAT
BS07601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagC-D-RA | 1158 | CG8707-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagC-D-RA | 1558 | CG8707-RA | 176..1334 | 16..1174 | 5795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8162768..8163241 | 492..19 | 2370 | 100 | Minus |
2R | 25286936 | 2R | 8161903..8162227 | 1174..850 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 8162488..8162708 | 709..489 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 8162286..8162428 | 852..710 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:05 has no hits.
BS07601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:31 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-RA | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:32 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-RA | 181..1349 | 8..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:22 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 177..1334 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:31 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8707-RA | 181..1349 | 8..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:33 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagC-D-RA | 177..1334 | 17..1174 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:33 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8161903..8162224 | 853..1174 | 100 | <- | Minus |
2R | 8162286..8162428 | 710..852 | 100 | <- | Minus |
2R | 8162488..8162706 | 491..709 | 100 | <- | Minus |
2R | 8162770..8163242 | 17..490 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:22 Download gff for
BS07601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4049408..4049729 | 853..1174 | 100 | <- | Minus |
arm_2R | 4049791..4049933 | 710..852 | 100 | <- | Minus |
arm_2R | 4049993..4050211 | 491..709 | 100 | <- | Minus |
arm_2R | 4050275..4050747 | 17..490 | 99 | | Minus |
BS07601.pep Sequence
Translation from 16 to 1173
> BS07601.pep
MSYDDDDYPADTFPKDFGYRAYNQDGLELEPNATGSSETKPRILLMGMRR
SGKSSIQKVVFHKMSPNETLFLESTSKIVKDDINNSSFVQFQIWDFPGQI
DFFEPTFDSDMIFGGCGALVFVIDAKDDYNEALTKFKNTVLQAYKVNKRI
KFEVFIHKVDGISDDSKMESQRDIHQRSSDDLNEAGLDQIHLSFHLTSIY
DHSIFEAFSKVVQKLIPQLPTLENLLNIFIPNSGIEKAFLFDVVSKIYIA
TDSSPVDMQTYELCCDMIDVVIDLSSIYSSEETAFDSGSSSLIKLNNNTI
LYLREVNKFLALVCILREENFNRQGVIDYNFICFRDAISEVFELRLKRQK
QLENNDQDDDDLVDEQTLIRHGHDAGGISRAQPIN*
BS07601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagC-D-PA | 385 | CG8707-PA | 1..385 | 1..385 | 1990 | 100 | Plus |