Clone BS07601 Report

Search the DGRC for BS07601

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRagC-D-RA
Protein status:BS07601.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07601.3prime Sequence

946 bp (846 high quality bases) assembled on 2006-01-06

> BS07601.3prime
ATGGTCTAGAAAGCTTCTAATTAATTGGCTGCGCTCGCGAAATTCCACCT
GCGTCGTGGCCATGGCGAATCAGGGTCTGCTCATCGACCAGATCATCGTC
GTCCTGGTCGTTGTTCTCCAGCTGCTTCTGGCGCTTTAGCCGCAGCTCGA
ATACCTCGCTGATGGCGTCGCGGAAACAGATGAAATTGTAGTCGATGACG
CCCTGCCGGTTGAAGTTCTCCTCGCGCAGGATGCAGACCAGGGCCAGGAA
CTTGTTCACCTCCCGCAGGTAGAGTATCGTGTTGTTGTTTAACTTGATGA
GACTAGAGCTCCCGCTGTCAAAGGCGGTTTCTTCGGAGCTGTATATGCTG
GACAGATCAATGACCACGTCAATCATATCGCAGCAGAGCTCATACGTCTG
CATATCGACTGGTGACGAGTCCGTGGCTATGTAAATTTTGGAAACCACAT
CGAACAGAAAGGCTTTTTCTATTCCGGAGTTTGGTATAAAAATGTTCAGC
AGATTCTCCAGCGTCGGAAGCTGGGGAATCAGCTTCTGCACCACCTTGGA
GAAGGCCTCGAAGATGGAGTGGTCGTATATGGAGGTCAGATGGAAACTCA
GGTGGATCTGATCGAGGCCAGCCTCGTTAAGGTCATCCGACGACCGCTGG
TGTATGTCCCGCTGCGATTCCATTTTCGAGTCGTCGCTAATTCCATCCAC
CTTGTGTATAAACACCTCGAACTTGATGCGCTTGTTCACTTTGTAGGCCT
GCAGCACTGTGTTCTTGAACTTGGTCAGCGCCTCGTTGTAGTCATCCTTG
GCATCGATGACAAAGACCAGGGCTCCACAGCCTCCAAAGATCATGTCAGA
ATCAAAGGTCGGCTCGAAGAAGTCAATCTGGCCGGGGAAGTCCCAGATCT
GGAACTGCACAAAGCTGGAGTTGTTGATGTCGTCCTTCACGATCTT

BS07601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8707-PA 1158 CG8707-RA 229..1158 946..17 4650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 405..1334 946..17 4650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8161903..8162227 17..341 1625 100 Plus
2R 25286936 2R 8162768..8163015 699..946 1240 100 Plus
2R 25286936 2R 8162488..8162708 482..702 1105 100 Plus
2R 25286936 2R 8162286..8162428 339..481 715 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:17:35 has no hits.

BS07601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:31 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 229..1158 17..946 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:16 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 229..1158 17..946 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:36:25 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 405..1336 13..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:03 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 405..1336 13..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:03 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8161899..8162224 13..338 99 <- Plus
2R 8162286..8162428 339..481 100 <- Plus
2R 8162488..8162706 482..700 100 <- Plus
2R 8162770..8163015 701..946 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:36:25 Download gff for BS07601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049404..4049729 13..338 99 <- Plus
arm_2R 4049791..4049933 339..481 100 <- Plus
arm_2R 4049993..4050211 482..700 100 <- Plus
arm_2R 4050275..4050520 701..946 100   Plus

BS07601.5prime Sequence

926 bp (790 high quality bases) assembled on 2006-01-06

> BS07601.5prime
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATAC
AGCTCCGAAGAAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTT
AAAACACAACACGATACTCTACCTGC

BS07601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8707-PA 1158 CG8707-RA 1..910 17..926 4500 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 176..1086 16..926 4525 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8162768..8163241 492..19 2370 100 Minus
2R 25286936 2R 8162488..8162708 709..489 1105 100 Minus
2R 25286936 2R 8162286..8162428 852..710 715 100 Minus
2R 25286936 2R 8162151..8162227 926..850 355 97.4 Minus
Blast to na_te.dros performed on 2015-02-12 20:02:46 has no hits.

BS07601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:32 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:17 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8707-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:53 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 168..1086 8..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:12 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 168..1086 8..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:12 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8162488..8162706 491..709 100 <- Minus
2R 8162151..8162224 853..926 97 <- Minus
2R 8162286..8162428 710..852 100 <- Minus
2R 8162770..8163243 16..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:53 Download gff for BS07601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049656..4049729 853..926 97 <- Minus
arm_2R 4049791..4049933 710..852 100 <- Minus
arm_2R 4049993..4050211 491..709 100 <- Minus
arm_2R 4050275..4050748 16..490 99   Minus

BS07601.complete Sequence

1190 bp (1190 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635914

> BS07601.complete
GAAGTTATCAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACA
CGTTCCCCAAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAA
CTGGAGCCCAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCT
GATGGGAATGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCC
ACAAGATGTCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATC
GTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA
CTTCCCCGGCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGA
TCTTTGGAGGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGAC
TACAACGAGGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAA
AGTGAACAAGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAA
TTAGCGACGACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCG
TCGGATGACCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCA
TCTGACCTCCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGG
TGCAGAAGCTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATT
TTTATACCAAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTC
CAAAATTTACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATG
AGCTCTGCTGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATAC
AGCTCCGAAGAAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTT
AAACAACAACACGATACTCTACCTGCGGGAGGTGAACAAGTTCCTGGCCC
TGGTCTGCATCCTGCGCGAGGAGAACTTCAACCGGCAGGGCGTCATCGAC
TACAATTTCATCTGTTTCCGCGACGCCATCAGCGAGGTATTCGAGCTGCG
GCTAAAGCGCCAGAAGCAGCTGGAGAACAACGACCAGGACGACGATGATC
TGGTCGATGAGCAGACCCTGATTCGCCATGGCCACGACGCAGGTGGAATT
TCGCGAGCGCAGCCAATTAATTAGAAGCTTTCTAGACCAT

BS07601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1158 CG8707-PA 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-RA 1558 CG8707-RA 176..1334 16..1174 5795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8162768..8163241 492..19 2370 100 Minus
2R 25286936 2R 8161903..8162227 1174..850 1625 100 Minus
2R 25286936 2R 8162488..8162708 709..489 1105 100 Minus
2R 25286936 2R 8162286..8162428 852..710 715 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:14:05 has no hits.

BS07601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:31 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 1..1158 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:32 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 181..1349 8..1178 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:22 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 177..1334 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:31 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
CG8707-RA 181..1349 8..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:33 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
RagC-D-RA 177..1334 17..1174 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:33 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8161903..8162224 853..1174 100 <- Minus
2R 8162286..8162428 710..852 100 <- Minus
2R 8162488..8162706 491..709 100 <- Minus
2R 8162770..8163242 17..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:22 Download gff for BS07601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4049408..4049729 853..1174 100 <- Minus
arm_2R 4049791..4049933 710..852 100 <- Minus
arm_2R 4049993..4050211 491..709 100 <- Minus
arm_2R 4050275..4050747 17..490 99   Minus

BS07601.pep Sequence

Translation from 16 to 1173

> BS07601.pep
MSYDDDDYPADTFPKDFGYRAYNQDGLELEPNATGSSETKPRILLMGMRR
SGKSSIQKVVFHKMSPNETLFLESTSKIVKDDINNSSFVQFQIWDFPGQI
DFFEPTFDSDMIFGGCGALVFVIDAKDDYNEALTKFKNTVLQAYKVNKRI
KFEVFIHKVDGISDDSKMESQRDIHQRSSDDLNEAGLDQIHLSFHLTSIY
DHSIFEAFSKVVQKLIPQLPTLENLLNIFIPNSGIEKAFLFDVVSKIYIA
TDSSPVDMQTYELCCDMIDVVIDLSSIYSSEETAFDSGSSSLIKLNNNTI
LYLREVNKFLALVCILREENFNRQGVIDYNFICFRDAISEVFELRLKRQK
QLENNDQDDDDLVDEQTLIRHGHDAGGISRAQPIN*

BS07601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
RagC-D-PA 385 CG8707-PA 1..385 1..385 1990 100 Plus