Clone Sequence Records
BS07603.3prime Sequence
853 bp (757 high quality bases) assembled on 2006-01-06
> BS07603.3prime
ATGGTCTAGAAAGCTTTTAGCTAAACTCCCCCCTTAGACTATTTAGCACA
AGGAGTGCCATTGCATGCAGCATCACCATATTCCACCACGTGCTGTGCCA
TCCAACCGCACCACCATGATGCAGTTCGGCGAAGCTTTCGCCGTTCAGAA
TGTGAACCACTATGGTGAAGTTCTGGAACTCACTGATGGAGCATGTGTAG
TTGCCGGAATCCGTTTTACTGATCTTCGCTATCGAGAGCGTCGAGTTGGC
TCCATCCTCCATCAGTTCGGTTTTGACGCTCACTCCCCCGCGAGTAACGT
CGTAGTTAAGGATGTTGTCCATGTGCTTCCAGAAGACCACGGAACTGGTC
ATGGCCACGTTTCGCACCACACAGGAGAGCTGTAGCGTGGAATCGATCTC
GTAGTACTTCTCCTGCAGCGGATCACCCACCTCGTCCACTATCATCACTT
TCGGAGCATTAACGTGCAGGTTGATTTGAATGACGCGTGGCGGATGCGTT
GAGATCTGGCACTCGTAGATAGCCTCGTCGTCCTTCTTCACATTGGTTAT
CTTCAGTCGCCAGTTGTTTGGGTACTGGAACTCCATCTTGTAGCGCTTAT
CACCCGTATACGTGTGCATGCCCACTGTCAGCAGGTCCAGGGCGTTGCCA
TTGTCCTTGCCCTCGTCCTGCGTGTTGTGCCGCACCCAAGAGACAGTCTT
ATCCTGCAGCAGTGAGATCCTGCAGTTCAGGTGAATGCTGGAGCCCGCCT
GCACGGTGAGATTGGTGGCCTGACCAATCCGCTGCACATCCTCGAAGTGG
GGGCCATACCTCTGATCGTGATGATGGTGCTTATTGGGCGAAGAGAACGT
GTC
BS07603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12191-PA | 1578 | dpr20-RA | 742..1578 | 853..17 | 4160 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 1320..2156 | 853..17 | 4170 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 853906..854143 | 457..694 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 853670..853848 | 279..457 | 895 | 100 | Plus |
3L | 28110227 | 3L | 853468..853607 | 141..280 | 700 | 100 | Plus |
3L | 28110227 | 3L | 853281..853406 | 17..142 | 630 | 100 | Plus |
3L | 28110227 | 3L | 854294..854412 | 693..811 | 595 | 100 | Plus |
3L | 28110227 | 3L | 854585..854630 | 808..853 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:35:04 has no hits.
BS07603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:35 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-PA | 742..1578 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:22 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12191-PA | 742..1578 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:31 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1320..2164 | 11..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:07 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1320..2164 | 11..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:07 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 854296..854410 | 695..809 | 100 | <- | Plus |
3L | 853906..854143 | 457..694 | 100 | <- | Plus |
3L | 854587..854630 | 810..853 | 97 | | Plus |
3L | 853273..853405 | 11..141 | 97 | <- | Plus |
3L | 853469..853605 | 142..278 | 100 | <- | Plus |
3L | 853670..853847 | 279..456 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:31 Download gff for
BS07603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 853906..854143 | 457..694 | 100 | <- | Plus |
arm_3L | 854296..854410 | 695..809 | 100 | <- | Plus |
arm_3L | 854587..854630 | 810..853 | 97 | | Plus |
arm_3L | 853273..853405 | 11..141 | 97 | <- | Plus |
arm_3L | 853469..853605 | 142..278 | 100 | <- | Plus |
arm_3L | 853670..853847 | 279..456 | 100 | <- | Plus |
BS07603.5prime Sequence
908 bp (807 high quality bases) assembled on 2006-01-06
> BS07603.5prime
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAAG
BS07603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12191-PA | 1578 | dpr20-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 579..1468 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 854585..855044 | 803..344 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 856343..856670 | 344..17 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 854306..854412 | 906..800 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:00 has no hits.
BS07603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:36 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-PA | 1..891 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:23 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12191-PA | 1..891 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:30 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..1469 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:00 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..1469 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:00 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 856343..856670 | 17..344 | 100 | | Minus |
3L | 854304..854410 | 802..908 | 99 | <- | Minus |
3L | 854587..855043 | 345..801 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:30 Download gff for
BS07603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 854304..854410 | 802..908 | 99 | <- | Minus |
arm_3L | 854587..855043 | 345..801 | 100 | <- | Minus |
arm_3L | 856343..856670 | 17..344 | 100 | | Minus |
BS07603.complete Sequence
1610 bp (1610 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635915
> BS07603.complete
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAGGATAAGACTGTCTCTTGGGTGCGGCACAACACGCAGGACGAGG
GCAAGGACAATGGCAACGCCCTGGACCTGCTGACAGTGGGCATGCACACG
TATACGGGTGATAAGCGCTACAAGATGGAGTTCCAGTACCCAAACAACTG
GCGACTGAAGATAACCAATGTGAAGAAGGACGACGAGGCTATCTACGAGT
GCCAGATCTCAACGCATCCGCCACGCGTCATTCAAATCAACCTGCACGTT
AATGCTCCGAAAGTGATGATAGTGGACGAGGTGGGTGATCCGCTGCAGGA
GAAGTACTACGAGATCGATTCCACGCTACAGCTCTCCTGTGTGGTGCGAA
ACGTGGCCATGACCAGTTCCGTGGTCTTCTGGAAGCACATGGACAACATC
CTTAACTACGACGTTACTCGCGGGGGAGTGAGCGTCAAAACCGAACTGAT
GGAGGATGGAGCCAACTCGACGCTCTCGATAGCGAAGATCAGTAAAACGG
ATTCCGGCAACTACACATGCTCCATCAGTGAGTTCCAGAACTTCACCATA
GTGGTTCACATTCTGAACGGCGAAAGCTTCGCCGAACTGCATCATGGTGG
TGCGGTTGGATGGCACAGCACGTGGTGGAATATGGTGATGCTGCATGCAA
TGGCACTCCTTGTGCTAAATAGTCTAAGGGGGGAGTTTAGCTAAAAGCTT
TCTAGACCAT
BS07603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 1578 | CG12191-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-RA | 2717 | CG12191-RA | 579..2156 | 17..1594 | 7890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 854585..855044 | 803..344 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 856343..856670 | 344..17 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 853906..854143 | 1154..917 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 853670..853848 | 1332..1154 | 895 | 100 | Minus |
3L | 28110227 | 3L | 853468..853607 | 1470..1331 | 700 | 100 | Minus |
3L | 28110227 | 3L | 853281..853406 | 1594..1469 | 630 | 100 | Minus |
3L | 28110227 | 3L | 854294..854412 | 918..800 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:30:32 has no hits.
BS07603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:14 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 1..1578 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:12 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 570..2155 | 17..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:24 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..2154 | 17..1592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:14 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 570..2155 | 17..1600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:04 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr20-RA | 579..2154 | 17..1592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:04 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 856343..856670 | 17..344 | 100 | | Minus |
3L | 853283..853405 | 1470..1592 | 100 | <- | Minus |
3L | 853469..853605 | 1333..1469 | 100 | <- | Minus |
3L | 853670..853847 | 1155..1332 | 100 | <- | Minus |
3L | 853906..854143 | 917..1154 | 100 | <- | Minus |
3L | 854296..854410 | 802..916 | 100 | <- | Minus |
3L | 854587..855043 | 345..801 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:24 Download gff for
BS07603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 853283..853405 | 1470..1592 | 100 | <- | Minus |
arm_3L | 853469..853605 | 1333..1469 | 100 | <- | Minus |
arm_3L | 853670..853847 | 1155..1332 | 100 | <- | Minus |
arm_3L | 853906..854143 | 917..1154 | 100 | <- | Minus |
arm_3L | 854296..854410 | 802..916 | 100 | <- | Minus |
arm_3L | 854587..855043 | 345..801 | 100 | <- | Minus |
arm_3L | 856343..856670 | 17..344 | 100 | | Minus |
BS07603.pep Sequence
Translation from 16 to 1593
> BS07603.pep
MRLNEPAARTRPRTKSTTDATKFSSSRGDLHLDCAVPNLIRLLLLIATIM
GSGLVQAKTIYDSVNMIQSLDALVEPRETTKVPLQTTPATPPTAHAHIHN
QVSTLRSSYEDSDDGVDGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQ
AGSGTVSPKSSPDSSGHKKNASFQQIGSQNVNALVPATVATTSSGLPSSS
NASLATPTEPARNRSTGLVRNSAVKVDSKHPLSKGQKTDAPMLNYIFDTF
SSANKHHHHDQRYGPHFEDVQRIGQATNLTVQAGSSIHLNCRISLLQDKT
VSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKIT
NVKKDDEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEI
DSTLQLSCVVRNVAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGAN
STLSIAKISKTDSGNYTCSISEFQNFTIVVHILNGESFAELHHGGAVGWH
STWWNMVMLHAMALLVLNSLRGEFS*
BS07603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr20-PA | 525 | CG12191-PA | 1..525 | 1..525 | 2723 | 100 | Plus |
dpr14-PB | 340 | CG10946-PB | 83..317 | 278..520 | 527 | 41.6 | Plus |
dpr14-PA | 340 | CG10946-PA | 83..317 | 278..520 | 527 | 41.6 | Plus |
dpr6-PC | 390 | CG14162-PC | 82..302 | 278..514 | 358 | 36.6 | Plus |
dpr6-PE | 283 | CG14162-PE | 82..280 | 278..491 | 339 | 37.2 | Plus |