Clone BS07603 Report

Search the DGRC for BS07603

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptdpr20-RA
Protein status:BS07603.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07603.3prime Sequence

853 bp (757 high quality bases) assembled on 2006-01-06

> BS07603.3prime
ATGGTCTAGAAAGCTTTTAGCTAAACTCCCCCCTTAGACTATTTAGCACA
AGGAGTGCCATTGCATGCAGCATCACCATATTCCACCACGTGCTGTGCCA
TCCAACCGCACCACCATGATGCAGTTCGGCGAAGCTTTCGCCGTTCAGAA
TGTGAACCACTATGGTGAAGTTCTGGAACTCACTGATGGAGCATGTGTAG
TTGCCGGAATCCGTTTTACTGATCTTCGCTATCGAGAGCGTCGAGTTGGC
TCCATCCTCCATCAGTTCGGTTTTGACGCTCACTCCCCCGCGAGTAACGT
CGTAGTTAAGGATGTTGTCCATGTGCTTCCAGAAGACCACGGAACTGGTC
ATGGCCACGTTTCGCACCACACAGGAGAGCTGTAGCGTGGAATCGATCTC
GTAGTACTTCTCCTGCAGCGGATCACCCACCTCGTCCACTATCATCACTT
TCGGAGCATTAACGTGCAGGTTGATTTGAATGACGCGTGGCGGATGCGTT
GAGATCTGGCACTCGTAGATAGCCTCGTCGTCCTTCTTCACATTGGTTAT
CTTCAGTCGCCAGTTGTTTGGGTACTGGAACTCCATCTTGTAGCGCTTAT
CACCCGTATACGTGTGCATGCCCACTGTCAGCAGGTCCAGGGCGTTGCCA
TTGTCCTTGCCCTCGTCCTGCGTGTTGTGCCGCACCCAAGAGACAGTCTT
ATCCTGCAGCAGTGAGATCCTGCAGTTCAGGTGAATGCTGGAGCCCGCCT
GCACGGTGAGATTGGTGGCCTGACCAATCCGCTGCACATCCTCGAAGTGG
GGGCCATACCTCTGATCGTGATGATGGTGCTTATTGGGCGAAGAGAACGT
GTC

BS07603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12191-PA 1578 dpr20-RA 742..1578 853..17 4160 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 1320..2156 853..17 4170 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 853906..854143 457..694 1190 100 Plus
3L 28110227 3L 853670..853848 279..457 895 100 Plus
3L 28110227 3L 853468..853607 141..280 700 100 Plus
3L 28110227 3L 853281..853406 17..142 630 100 Plus
3L 28110227 3L 854294..854412 693..811 595 100 Plus
3L 28110227 3L 854585..854630 808..853 215 97.8 Plus
Blast to na_te.dros performed on 2015-02-12 12:35:04 has no hits.

BS07603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:35 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-PA 742..1578 17..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:22 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12191-PA 742..1578 17..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:31 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1320..2164 11..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:07 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1320..2164 11..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:07 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 854296..854410 695..809 100 <- Plus
3L 853906..854143 457..694 100 <- Plus
3L 854587..854630 810..853 97   Plus
3L 853273..853405 11..141 97 <- Plus
3L 853469..853605 142..278 100 <- Plus
3L 853670..853847 279..456 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:31 Download gff for BS07603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 853906..854143 457..694 100 <- Plus
arm_3L 854296..854410 695..809 100 <- Plus
arm_3L 854587..854630 810..853 97   Plus
arm_3L 853273..853405 11..141 97 <- Plus
arm_3L 853469..853605 142..278 100 <- Plus
arm_3L 853670..853847 279..456 100 <- Plus

BS07603.5prime Sequence

908 bp (807 high quality bases) assembled on 2006-01-06

> BS07603.5prime
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAAG

BS07603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12191-PA 1578 dpr20-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 579..1468 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 854585..855044 803..344 2300 100 Minus
3L 28110227 3L 856343..856670 344..17 1640 100 Minus
3L 28110227 3L 854306..854412 906..800 535 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:31:00 has no hits.

BS07603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:36 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-PA 1..891 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:23 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12191-PA 1..891 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:30 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..1469 17..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:00 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..1469 17..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:00 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 856343..856670 17..344 100   Minus
3L 854304..854410 802..908 99 <- Minus
3L 854587..855043 345..801 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:30 Download gff for BS07603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 854304..854410 802..908 99 <- Minus
arm_3L 854587..855043 345..801 100 <- Minus
arm_3L 856343..856670 17..344 100   Minus

BS07603.complete Sequence

1610 bp (1610 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635915

> BS07603.complete
GAAGTTATCAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGAC
CCAGAACTAAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGT
GACCTTCACCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCT
CATCGCAACGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACG
ACTCGGTTAACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAA
ACGACCAAGGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCA
CGCCCACATCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATT
CAGATGATGGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCT
ACGGTGGCGATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGA
ATCGTTATCCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCC
CCGATTCGTCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGC
CAGAATGTTAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGG
CCTCCCGTCGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGA
GGAACCGGAGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGC
AAGCATCCACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTA
CATCTTCGACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGA
GGTATGGCCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAAT
CTCACCGTGCAGGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACT
GCTGCAGGATAAGACTGTCTCTTGGGTGCGGCACAACACGCAGGACGAGG
GCAAGGACAATGGCAACGCCCTGGACCTGCTGACAGTGGGCATGCACACG
TATACGGGTGATAAGCGCTACAAGATGGAGTTCCAGTACCCAAACAACTG
GCGACTGAAGATAACCAATGTGAAGAAGGACGACGAGGCTATCTACGAGT
GCCAGATCTCAACGCATCCGCCACGCGTCATTCAAATCAACCTGCACGTT
AATGCTCCGAAAGTGATGATAGTGGACGAGGTGGGTGATCCGCTGCAGGA
GAAGTACTACGAGATCGATTCCACGCTACAGCTCTCCTGTGTGGTGCGAA
ACGTGGCCATGACCAGTTCCGTGGTCTTCTGGAAGCACATGGACAACATC
CTTAACTACGACGTTACTCGCGGGGGAGTGAGCGTCAAAACCGAACTGAT
GGAGGATGGAGCCAACTCGACGCTCTCGATAGCGAAGATCAGTAAAACGG
ATTCCGGCAACTACACATGCTCCATCAGTGAGTTCCAGAACTTCACCATA
GTGGTTCACATTCTGAACGGCGAAAGCTTCGCCGAACTGCATCATGGTGG
TGCGGTTGGATGGCACAGCACGTGGTGGAATATGGTGATGCTGCATGCAA
TGGCACTCCTTGTGCTAAATAGTCTAAGGGGGGAGTTTAGCTAAAAGCTT
TCTAGACCAT

BS07603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 1578 CG12191-PA 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-RA 2717 CG12191-RA 579..2156 17..1594 7890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 854585..855044 803..344 2300 100 Minus
3L 28110227 3L 856343..856670 344..17 1640 100 Minus
3L 28110227 3L 853906..854143 1154..917 1190 100 Minus
3L 28110227 3L 853670..853848 1332..1154 895 100 Minus
3L 28110227 3L 853468..853607 1470..1331 700 100 Minus
3L 28110227 3L 853281..853406 1594..1469 630 100 Minus
3L 28110227 3L 854294..854412 918..800 595 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:30:32 has no hits.

BS07603.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:14 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 1..1578 17..1594 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:12 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 570..2155 17..1600 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:24 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..2154 17..1592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:14 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 570..2155 17..1600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:04 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
dpr20-RA 579..2154 17..1592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:04 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
3L 856343..856670 17..344 100   Minus
3L 853283..853405 1470..1592 100 <- Minus
3L 853469..853605 1333..1469 100 <- Minus
3L 853670..853847 1155..1332 100 <- Minus
3L 853906..854143 917..1154 100 <- Minus
3L 854296..854410 802..916 100 <- Minus
3L 854587..855043 345..801 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:24 Download gff for BS07603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 853283..853405 1470..1592 100 <- Minus
arm_3L 853469..853605 1333..1469 100 <- Minus
arm_3L 853670..853847 1155..1332 100 <- Minus
arm_3L 853906..854143 917..1154 100 <- Minus
arm_3L 854296..854410 802..916 100 <- Minus
arm_3L 854587..855043 345..801 100 <- Minus
arm_3L 856343..856670 17..344 100   Minus

BS07603.pep Sequence

Translation from 16 to 1593

> BS07603.pep
MRLNEPAARTRPRTKSTTDATKFSSSRGDLHLDCAVPNLIRLLLLIATIM
GSGLVQAKTIYDSVNMIQSLDALVEPRETTKVPLQTTPATPPTAHAHIHN
QVSTLRSSYEDSDDGVDGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQ
AGSGTVSPKSSPDSSGHKKNASFQQIGSQNVNALVPATVATTSSGLPSSS
NASLATPTEPARNRSTGLVRNSAVKVDSKHPLSKGQKTDAPMLNYIFDTF
SSANKHHHHDQRYGPHFEDVQRIGQATNLTVQAGSSIHLNCRISLLQDKT
VSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYPNNWRLKIT
NVKKDDEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEI
DSTLQLSCVVRNVAMTSSVVFWKHMDNILNYDVTRGGVSVKTELMEDGAN
STLSIAKISKTDSGNYTCSISEFQNFTIVVHILNGESFAELHHGGAVGWH
STWWNMVMLHAMALLVLNSLRGEFS*

BS07603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
dpr20-PA 525 CG12191-PA 1..525 1..525 2723 100 Plus
dpr14-PB 340 CG10946-PB 83..317 278..520 527 41.6 Plus
dpr14-PA 340 CG10946-PA 83..317 278..520 527 41.6 Plus
dpr6-PC 390 CG14162-PC 82..302 278..514 358 36.6 Plus
dpr6-PE 283 CG14162-PE 82..280 278..491 339 37.2 Plus