Clone Sequence Records
BS07607.3prime Sequence
894 bp (856 high quality bases) assembled on 2006-01-06
> BS07607.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGCCACACCGCGTGACAATCACGGTT
TTCTTGGTCTTGCCATTTTTGGTGCCGAATTCGTGGCAATTTTGGAGCAC
CCTTAGGCCGCCGCAAACTCGTCCAAAGATGACCCGCTGCCACGGAATCA
CCGATTGCTTAAAGCTGATGGTATAGCTGAGAAGTCCTTGGGGAAAGTGA
CGGCGATAGTCCCATGGGTATGATAATACGCCGGTTATCTTGCTGGGATC
CAAAAAGGAGTACTTGACGCTGTGGTGATTGTGCAGGGAATCATGAACAG
CCGGTACAAGTTCAGCCTCCATCCAGAGATTGGAGAATATTCGCACAAAC
CGATGGCATCCTACATCGTTGTGGGTGGCCATACGCACAAACTCCAGCAC
CACTTCCGGACTCAGTTCCGTGTAGAGTTGTAGGAGTAATCTGCCCATGA
ACTGGTTATTCTCTCGCACCGCCATATCGAAATATATGATGGGTCGCAGC
AGGATTTGGGCACTACGTTTGCCCAAGCGAGGCGATGGCATATATGGCAA
GAAAGTACTGACCGTCTCATCGGAGGCCTTTTGTTCGAGTGGCTTGACGG
GTGGCACCCAAGGATTGTGTGAATCCACTTTGGATTTCACTTGCGATAGG
CGACAACCGAGCTGCCTGTTCTCCTGGCTCAAGCGATCTGCCAGCTCACG
GATTTTATTCCGATTCGACTGAAGGGCGGGAAAATGGCGATTGAAGCTAT
CCACACCCCCCTTTAGTCGATTGGTCTTGTTAATCCGTCCAAGGAGTTCC
ATATTTTTTCGGAAAATCTCCTGCTTTTGGTAAATTCGCCGGCTAACTGG
CTGCGATTGAGAAGGCGAGCATGAAATCCAAGCGAATCCCCAGC
BS07607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-PA | 1158 | CG32236-RA | 344..1158 | 831..17 | 4075 | 100 | Minus |
CG32236-PA | 1158 | CG32236-RA | 280..343 | 894..831 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-RA | 1463 | CG32236-RA | 429..1307 | 894..17 | 4370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4666083..4666961 | 17..894 | 4345 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 17:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 702..666 | 113 | 78.4 | Minus |
BS07607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:44 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-PA | 280..1158 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:36 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-PA | 280..1158 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:14 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 429..1307 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:41 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 429..1307 | 17..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:41 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4666083..4666961 | 17..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:14 Download gff for
BS07607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4666083..4666961 | 17..894 | 99 | | Plus |
BS07607.5prime Sequence
943 bp (838 high quality bases) assembled on 2006-01-06
> BS07607.5prime
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTANGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTTGTACGGCTGTTCATGA
TTCCCTGCAACATCACCACAGCGTCAAGTACTCCTTTTTGGAT
BS07607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-PA | 1158 | CG32236-RA | 1..867 | 17..883 | 4316 | 99.8 | Plus |
CG32236-PA | 1158 | CG32236-RA | 872..927 | 888..943 | 230 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-RA | 1463 | CG32236-RA | 150..1076 | 17..943 | 4549 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4666314..4667240 | 943..17 | 4534 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-10 20:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 489..525 | 113 | 78.4 | Plus |
BS07607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:45 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:37 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:28 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 146..1076 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:06 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 146..1076 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:06 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4666314..4667244 | 9..943 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:28 Download gff for
BS07607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4666314..4667244 | 9..943 | 99 | | Minus |
BS07607.complete Sequence
1190 bp (1190 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635917
> BS07607.complete
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTAGGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGA
TTCCCTGCACAATCACCACAGCGTCAAGTACTCCTTTTTGGATCCCAGCA
AGATAACCGGCGTATTATCATACCCATGGGACTATCGCCGTCACTTTCCC
CAAGGACTTCTCAGCTATACCATCAGCTTTAAGCAATCGGTGATTCCGTG
GCAGCGGGTCATCTTTGGACGAGTTTGCGGCGGCCTAAGGGTGCTCCAAA
ATTGCCACGAATTCGGCACCAAAAATGGCAAGACCAAGAAAACCGTGATT
GTCACGCGGTGTGGCCTGCTCTAAAAGCTTTCTAGACCAT
BS07607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-RA | 1158 | CG32236-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-RA | 1463 | CG32236-RA | 150..1307 | 17..1174 | 5790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4666083..4667240 | 1174..17 | 5790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rooA | 7621 | rooA ROOA_LTR 7621bp | 3293..3329 | 489..525 | 113 | 78.4 | Plus |
BS07607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:16 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:14 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 146..1307 | 9..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:38 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 150..1305 | 17..1172 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:16 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 146..1307 | 9..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:57 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32236-RA | 150..1305 | 17..1172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:57 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4666085..4667240 | 17..1172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:38 Download gff for
BS07607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4666085..4667240 | 17..1172 | 100 | | Minus |
BS07607.pep Sequence
Translation from 16 to 1173
> BS07607.pep
MNNRGVGFSEFFVKTPTSRSIQLRAKKVAKELVMQNKDVRDKILKNKVLT
YAQFRKIMKSAGNVTDLNPITYKSMIEIRQSQIDHRRLKSIKSAGDSLGF
HARLLNRSQLAGEFNQKQEIFRKNMELLGRINKTNRLKGGVDSFNRHFPA
LQSNRNKIRELADRLSQENRQLGCRLSQVKSKVDSHNPWVPPVKPLEQKA
SDETVSTFLPYMPSPRLGKRSAQILLRPIIYFDMAVRENNQFMGRLLLQL
YTELSPEVVLEFVRMATHNDVGCHRFVRIFSNLWMEAELVPAVHDSLHNH
HSVKYSFLDPSKITGVLSYPWDYRRHFPQGLLSYTISFKQSVIPWQRVIF
GRVCGGLRVLQNCHEFGTKNGKTKKTVIVTRCGLL*
BS07607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32236-PA | 385 | CG32236-PA | 1..385 | 1..385 | 2001 | 100 | Plus |
CG30350-PA | 369 | CG30350-PA | 48..369 | 75..385 | 301 | 28.3 | Plus |
CG15767-PA | 370 | CG15767-PA | 79..370 | 124..385 | 230 | 29.3 | Plus |
CG3492-PA | 404 | CG3492-PA | 243..404 | 225..385 | 215 | 34.8 | Plus |