Clone BS07607 Report

Search the DGRC for BS07607

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG32236-RA
Protein status:BS07607.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07607.3prime Sequence

894 bp (856 high quality bases) assembled on 2006-01-06

> BS07607.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGCCACACCGCGTGACAATCACGGTT
TTCTTGGTCTTGCCATTTTTGGTGCCGAATTCGTGGCAATTTTGGAGCAC
CCTTAGGCCGCCGCAAACTCGTCCAAAGATGACCCGCTGCCACGGAATCA
CCGATTGCTTAAAGCTGATGGTATAGCTGAGAAGTCCTTGGGGAAAGTGA
CGGCGATAGTCCCATGGGTATGATAATACGCCGGTTATCTTGCTGGGATC
CAAAAAGGAGTACTTGACGCTGTGGTGATTGTGCAGGGAATCATGAACAG
CCGGTACAAGTTCAGCCTCCATCCAGAGATTGGAGAATATTCGCACAAAC
CGATGGCATCCTACATCGTTGTGGGTGGCCATACGCACAAACTCCAGCAC
CACTTCCGGACTCAGTTCCGTGTAGAGTTGTAGGAGTAATCTGCCCATGA
ACTGGTTATTCTCTCGCACCGCCATATCGAAATATATGATGGGTCGCAGC
AGGATTTGGGCACTACGTTTGCCCAAGCGAGGCGATGGCATATATGGCAA
GAAAGTACTGACCGTCTCATCGGAGGCCTTTTGTTCGAGTGGCTTGACGG
GTGGCACCCAAGGATTGTGTGAATCCACTTTGGATTTCACTTGCGATAGG
CGACAACCGAGCTGCCTGTTCTCCTGGCTCAAGCGATCTGCCAGCTCACG
GATTTTATTCCGATTCGACTGAAGGGCGGGAAAATGGCGATTGAAGCTAT
CCACACCCCCCTTTAGTCGATTGGTCTTGTTAATCCGTCCAAGGAGTTCC
ATATTTTTTCGGAAAATCTCCTGCTTTTGGTAAATTCGCCGGCTAACTGG
CTGCGATTGAGAAGGCGAGCATGAAATCCAAGCGAATCCCCAGC

BS07607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-PA 1158 CG32236-RA 344..1158 831..17 4075 100 Minus
CG32236-PA 1158 CG32236-RA 280..343 894..831 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-RA 1463 CG32236-RA 429..1307 894..17 4370 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4666083..4666961 17..894 4345 99.9 Plus
Blast to na_te.dros performed 2015-02-10 17:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 3293..3329 702..666 113 78.4 Minus

BS07607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:44 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-PA 280..1158 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:36 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-PA 280..1158 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:14 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 429..1307 17..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:41 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 429..1307 17..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:41 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4666083..4666961 17..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:14 Download gff for BS07607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4666083..4666961 17..894 99   Plus

BS07607.5prime Sequence

943 bp (838 high quality bases) assembled on 2006-01-06

> BS07607.5prime
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTANGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTTGTACGGCTGTTCATGA
TTCCCTGCAACATCACCACAGCGTCAAGTACTCCTTTTTGGAT

BS07607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-PA 1158 CG32236-RA 1..867 17..883 4316 99.8 Plus
CG32236-PA 1158 CG32236-RA 872..927 888..943 230 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-RA 1463 CG32236-RA 150..1076 17..943 4549 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4666314..4667240 943..17 4534 99.2 Minus
Blast to na_te.dros performed 2015-02-10 20:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 3293..3329 489..525 113 78.4 Plus

BS07607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:45 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:37 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:28 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 146..1076 9..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:06 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 146..1076 9..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:06 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4666314..4667244 9..943 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:28 Download gff for BS07607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4666314..4667244 9..943 99   Minus

BS07607.complete Sequence

1190 bp (1190 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635917

> BS07607.complete
GAAGTTATCAGTCGACATGAATAACCGTGGAGTTGGATTCTCGGAGTTTT
TCGTAAAAACCCCAACCAGTCGGTCCATTCAATTGCGTGCCAAAAAAGTG
GCAAAGGAACTGGTGATGCAAAATAAGGATGTGCGGGACAAGATATTGAA
AAACAAAGTGCTTACCTATGCACAATTCCGAAAGATAATGAAATCAGCTG
GCAATGTGACGGATCTGAATCCGATCACCTATAAAAGTATGATTGAAATA
CGACAATCGCAGATCGATCACAGACGTCTCAAGAGTATTAAATCTGCTGG
GGATTCGCTTGGATTTCATGCTCGCCTTCTCAATCGCAGCCAGTTAGCCG
GCGAATTTAACCAAAAGCAGGAGATTTTCCGAAAAAATATGGAACTCCTT
GGACGGATTAACAAGACCAATCGACTAAAGGGGGGTGTGGATAGCTTCAA
TCGCCATTTTCCCGCCCTTCAGTCGAATCGGAATAAAATCCGTGAGCTGG
CAGATCGCTTGAGCCAGGAGAACAGGCAGCTCGGTTGTCGCCTATCGCAA
GTGAAATCCAAAGTGGATTCACACAATCCTTGGGTGCCACCCGTCAAGCC
ACTCGAACAAAAGGCCTCCGATGAGACGGTCAGTACTTTCTTGCCATATA
TGCCATCGCCTCGCTTGGGCAAACGTAGTGCCCAAATCCTGCTGCGACCC
ATCATATATTTCGATATGGCGGTGCGAGAGAATAACCAGTTCATGGGCAG
ATTACTCCTACAACTCTACACGGAACTGAGTCCGGAAGTGGTGCTGGAGT
TTGTGCGTATGGCCACCCACAACGATGTAGGATGCCATCGGTTTGTGCGA
ATATTCTCCAATCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGA
TTCCCTGCACAATCACCACAGCGTCAAGTACTCCTTTTTGGATCCCAGCA
AGATAACCGGCGTATTATCATACCCATGGGACTATCGCCGTCACTTTCCC
CAAGGACTTCTCAGCTATACCATCAGCTTTAAGCAATCGGTGATTCCGTG
GCAGCGGGTCATCTTTGGACGAGTTTGCGGCGGCCTAAGGGTGCTCCAAA
ATTGCCACGAATTCGGCACCAAAAATGGCAAGACCAAGAAAACCGTGATT
GTCACGCGGTGTGGCCTGCTCTAAAAGCTTTCTAGACCAT

BS07607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-RA 1158 CG32236-PA 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-RA 1463 CG32236-RA 150..1307 17..1174 5790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4666083..4667240 1174..17 5790 100 Minus
Blast to na_te.dros performed 2014-11-28 00:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 3293..3329 489..525 113 78.4 Plus

BS07607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:16 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 1..1158 17..1174 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:14 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 146..1307 9..1174 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:38 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 150..1305 17..1172 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:16 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 146..1307 9..1174 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:57 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
CG32236-RA 150..1305 17..1172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:57 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4666085..4667240 17..1172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:38 Download gff for BS07607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4666085..4667240 17..1172 100   Minus

BS07607.pep Sequence

Translation from 16 to 1173

> BS07607.pep
MNNRGVGFSEFFVKTPTSRSIQLRAKKVAKELVMQNKDVRDKILKNKVLT
YAQFRKIMKSAGNVTDLNPITYKSMIEIRQSQIDHRRLKSIKSAGDSLGF
HARLLNRSQLAGEFNQKQEIFRKNMELLGRINKTNRLKGGVDSFNRHFPA
LQSNRNKIRELADRLSQENRQLGCRLSQVKSKVDSHNPWVPPVKPLEQKA
SDETVSTFLPYMPSPRLGKRSAQILLRPIIYFDMAVRENNQFMGRLLLQL
YTELSPEVVLEFVRMATHNDVGCHRFVRIFSNLWMEAELVPAVHDSLHNH
HSVKYSFLDPSKITGVLSYPWDYRRHFPQGLLSYTISFKQSVIPWQRVIF
GRVCGGLRVLQNCHEFGTKNGKTKKTVIVTRCGLL*

BS07607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32236-PA 385 CG32236-PA 1..385 1..385 2001 100 Plus
CG30350-PA 369 CG30350-PA 48..369 75..385 301 28.3 Plus
CG15767-PA 370 CG15767-PA 79..370 124..385 230 29.3 Plus
CG3492-PA 404 CG3492-PA 243..404 225..385 215 34.8 Plus