Clone Sequence Records
BS07611.3prime Sequence
944 bp (847 high quality bases) assembled on 2006-01-06
> BS07611.3prime
ATGGTCTAGAAAGCTTCTATATCTTGATATTGGCAGTAGCCTTGGCTGCA
GCGGCGGCCGCCCTGCGCCGTTCCTTGAGGTCATTATAGCTAACGCCCGG
CTCCTTGTGGGAGTTGCGCTCGAAGCGCTTGACCTTGGACTTCTTGCGGC
TGACGAGCTTTGTCGTGGGCAACATATTGTTGCGTTGCAGCGTGTGGAAG
CGGTCCTTCAGCAGACTGCTCTCAGTCTTCACGTTGCGCAGATTTCCGGC
GATATCCTCGGGCAGATTTACGTCTAGGTCTGGCTCCTCGAACTTGTGAC
GCCCCAGGCGTTTCGGCTCAAACTTGGCCTTCTCGGCGCGCTGCTTGCGG
CGCTTCTTTAGATCATTCAGGTCCTCCTCCTCATCGTCTAGCTCGTGGCG
AATCGATTTGATGCGTATCAGGTCAGCCGTCTGTTGCTTGAGCTTCCTCT
TGAGCTCTGTTTGACGCGCCAGCTCCTTTTGCTTGAGCTCGTTGCGGCGA
GCCTGCTTGCTCTTCTTTTTGTTCTCCACGGGAGCGTTGATTGTGTGATA
TGGCTTTTCATCATCGTCCTCCTTTTTCTTCCCATTCGTTTGGACATCCT
CATCGAGCTCACTACCCTCCTCCTCGTCCATGCCTTGGCTCATTTCATTT
AGGCGACGACGATCTCTCTCCTCGGGCGTCACCTTGGAGAACATGCTGGT
GGTCACGCGCTTAAGGTGCTGTTCCTTCTTAATGATGCCCTCCTCGCGTT
CCACCACCTGATCAATAAGCGCCTGATGATCCTCGGGTGCGGGATTGTAG
CTCATGCCCGGATGCGGGAGTTCGAATTTCTTGGCTTTGGTGGTTTTGTG
GTGCAGACTAGCGTGAGTTTTCACCACCTTCTTTGCAATATTTCCAGCTG
TGTGCAGTGCCAGTTCGCGACTGATCCAACCCTTCTCGTCCTTG
BS07611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-PA | 1437 | CG1785-RA | 510..1437 | 944..17 | 4590 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-RA | 1885 | CG1785-RA | 603..1530 | 944..17 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8715835..8716251 | 830..414 | 2085 | 100 | Minus |
X | 23542271 | X | 8716313..8716710 | 414..17 | 1990 | 100 | Minus |
X | 23542271 | X | 8715659..8715773 | 944..830 | 545 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:27:39 has no hits.
BS07611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:52 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-PA | 510..1437 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:47 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-PA | 510..1437 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:51:37 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 603..1530 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:38 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 603..1530 | 17..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:38 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8715659..8715772 | 831..944 | 98 | -> | Minus |
X | 8715835..8716251 | 414..830 | 100 | -> | Minus |
X | 8716314..8716710 | 17..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:51:37 Download gff for
BS07611.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8609692..8609805 | 831..944 | 98 | -> | Minus |
arm_X | 8609868..8610284 | 414..830 | 100 | -> | Minus |
arm_X | 8610347..8610743 | 17..413 | 100 | | Minus |
BS07611.5prime Sequence
831 bp (782 high quality bases) assembled on 2006-01-06
> BS07611.5prime
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAG
BS07611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-PA | 1437 | CG1785-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-RA | 1885 | CG1785-RA | 94..908 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8715451..8715773 | 318..640 | 1615 | 100 | Plus |
X | 23542271 | X | 8715835..8716026 | 640..831 | 960 | 100 | Plus |
X | 23542271 | X | 8715221..8715395 | 144..318 | 875 | 100 | Plus |
X | 23542271 | X | 8715029..8715156 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:40 has no hits.
BS07611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:53 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:48 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:13 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 84..908 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:25 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 84..908 | 7..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:25 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8715019..8715156 | 7..144 | 97 | -> | Plus |
X | 8715222..8715395 | 145..318 | 100 | -> | Plus |
X | 8715452..8715772 | 319..639 | 100 | -> | Plus |
X | 8715835..8716026 | 640..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:13 Download gff for
BS07611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8609052..8609189 | 7..144 | 97 | -> | Plus |
arm_X | 8609255..8609428 | 145..318 | 100 | -> | Plus |
arm_X | 8609485..8609805 | 319..639 | 100 | -> | Plus |
arm_X | 8609868..8610059 | 640..831 | 100 | | Plus |
BS07611.complete Sequence
1469 bp (1469 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635918
> BS07611.complete
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGAG
GAGGGTAGTGAGCTCGATGAGGATGTCCAAACGAATGGGAAGAAAAAGGA
GGACGATGATGAAAAGCCATATCACACAATCAACGCTCCCGTGGAGAACA
AAAAGAAGAGCAAGCAGGCTCGCCGCAACGAGCTCAAGCAAAAGGAGCTG
GCGCGTCAAACAGAGCTCAAGAGGAAGCTCAAGCAACAGACGGCTGACCT
GATACGCATCAAATCGATTCGCCACGAGCTAGACGATGAGGAGGAGGACC
TGAATGATCTAAAGAAGCGCCGCAAGCAGCGCGCCGAGAAGGCCAAGTTT
GAGCCGAAACGCCTGGGGCGTCACAAGTTCGAGGAGCCAGACCTAGACGT
AAATCTGCCCGAGGATATCGCCGGAAATCTGCGCAACGTGAAGACTGAGA
GCAGTCTGCTGAAGGACCGCTTCCACACGCTGCAACGCAACAATATGTTG
CCCACGACAAAGCTCGTCAGCCGCAAGAAGTCCAAGGTCAAGCGCTTCGA
GCGCAACTCCCACAAGGAGCCGGGCGTTAGCTATAATGACCTCAAGGAAC
GGCGCAGGGCGGCCGCCGCTGCAGCCAAGGCTACTGCCAATATCAAGATA
TAGAAGCTTTCTAGACCAT
BS07611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-RA | 1437 | CG1785-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-RA | 1885 | CG1785-RA | 94..1530 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8715835..8716251 | 640..1056 | 2085 | 100 | Plus |
X | 23542271 | X | 8716313..8716710 | 1056..1453 | 1990 | 100 | Plus |
X | 23542271 | X | 8715451..8715773 | 318..640 | 1615 | 100 | Plus |
X | 23542271 | X | 8715221..8715395 | 144..318 | 875 | 100 | Plus |
X | 23542271 | X | 8715029..8715156 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:42:42 has no hits.
BS07611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:32 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 1..1437 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:33 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 69..1515 | 7..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:33 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 94..1530 | 17..1453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:32 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 69..1515 | 7..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:21 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1785-RA | 94..1530 | 17..1453 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:21 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8715452..8715772 | 319..639 | 100 | -> | Plus |
X | 8715029..8715156 | 17..144 | 100 | -> | Plus |
X | 8715222..8715395 | 145..318 | 100 | -> | Plus |
X | 8715835..8716251 | 640..1056 | 100 | -> | Plus |
X | 8716314..8716710 | 1057..1453 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:33 Download gff for
BS07611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8609062..8609189 | 17..144 | 100 | -> | Plus |
arm_X | 8609255..8609428 | 145..318 | 100 | -> | Plus |
arm_X | 8609485..8609805 | 319..639 | 100 | -> | Plus |
arm_X | 8609868..8610284 | 640..1056 | 100 | -> | Plus |
arm_X | 8610347..8610743 | 1057..1453 | 100 | | Plus |
BS07611.pep Sequence
Translation from 16 to 1452
> BS07611.pep
MTAVEPATKKKRISKKNKSAWRKTDIQDVEQFLEDQRQEERVGTFADKQD
EDLFVVDSSLPKTKATVLSVKQKRKLNAKKPMRSYQALENTSKVQDPIAK
RNHVRQKKNGRNIELEVCNPTKPRHRQANSDRAQYYVKLEQRLADKKNKK
LDVEKDIWQEVDFRDEIPGLKDEKGWISRELALHTAGNIGKKVVKTHASL
HHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREEGIIKKEQHLKRV
TTSMFSKVTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEK
PYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKS
IRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPED
IAGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK
EPGVSYNDLKERRRAAAAAAKATANIKI*
BS07611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1785-PA | 478 | CG1785-PA | 1..478 | 1..478 | 2451 | 100 | Plus |