Clone BS07611 Report

Search the DGRC for BS07611

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1785-RA
Protein status:BS07611.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07611.3prime Sequence

944 bp (847 high quality bases) assembled on 2006-01-06

> BS07611.3prime
ATGGTCTAGAAAGCTTCTATATCTTGATATTGGCAGTAGCCTTGGCTGCA
GCGGCGGCCGCCCTGCGCCGTTCCTTGAGGTCATTATAGCTAACGCCCGG
CTCCTTGTGGGAGTTGCGCTCGAAGCGCTTGACCTTGGACTTCTTGCGGC
TGACGAGCTTTGTCGTGGGCAACATATTGTTGCGTTGCAGCGTGTGGAAG
CGGTCCTTCAGCAGACTGCTCTCAGTCTTCACGTTGCGCAGATTTCCGGC
GATATCCTCGGGCAGATTTACGTCTAGGTCTGGCTCCTCGAACTTGTGAC
GCCCCAGGCGTTTCGGCTCAAACTTGGCCTTCTCGGCGCGCTGCTTGCGG
CGCTTCTTTAGATCATTCAGGTCCTCCTCCTCATCGTCTAGCTCGTGGCG
AATCGATTTGATGCGTATCAGGTCAGCCGTCTGTTGCTTGAGCTTCCTCT
TGAGCTCTGTTTGACGCGCCAGCTCCTTTTGCTTGAGCTCGTTGCGGCGA
GCCTGCTTGCTCTTCTTTTTGTTCTCCACGGGAGCGTTGATTGTGTGATA
TGGCTTTTCATCATCGTCCTCCTTTTTCTTCCCATTCGTTTGGACATCCT
CATCGAGCTCACTACCCTCCTCCTCGTCCATGCCTTGGCTCATTTCATTT
AGGCGACGACGATCTCTCTCCTCGGGCGTCACCTTGGAGAACATGCTGGT
GGTCACGCGCTTAAGGTGCTGTTCCTTCTTAATGATGCCCTCCTCGCGTT
CCACCACCTGATCAATAAGCGCCTGATGATCCTCGGGTGCGGGATTGTAG
CTCATGCCCGGATGCGGGAGTTCGAATTTCTTGGCTTTGGTGGTTTTGTG
GTGCAGACTAGCGTGAGTTTTCACCACCTTCTTTGCAATATTTCCAGCTG
TGTGCAGTGCCAGTTCGCGACTGATCCAACCCTTCTCGTCCTTG

BS07611.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 1437 CG1785-RA 510..1437 944..17 4590 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 603..1530 944..17 4610 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715835..8716251 830..414 2085 100 Minus
X 23542271 X 8716313..8716710 414..17 1990 100 Minus
X 23542271 X 8715659..8715773 944..830 545 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 12:27:39 has no hits.

BS07611.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:52 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 510..1437 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:47 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 510..1437 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:51:37 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 603..1530 17..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:38 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 603..1530 17..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:38 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8715659..8715772 831..944 98 -> Minus
X 8715835..8716251 414..830 100 -> Minus
X 8716314..8716710 17..413 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:51:37 Download gff for BS07611.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609692..8609805 831..944 98 -> Minus
arm_X 8609868..8610284 414..830 100 -> Minus
arm_X 8610347..8610743 17..413 100   Minus

BS07611.5prime Sequence

831 bp (782 high quality bases) assembled on 2006-01-06

> BS07611.5prime
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAG

BS07611.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 1437 CG1785-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 94..908 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715451..8715773 318..640 1615 100 Plus
X 23542271 X 8715835..8716026 640..831 960 100 Plus
X 23542271 X 8715221..8715395 144..318 875 100 Plus
X 23542271 X 8715029..8715156 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:40 has no hits.

BS07611.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:53 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:48 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:13 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 84..908 7..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:25 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 84..908 7..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:25 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8715019..8715156 7..144 97 -> Plus
X 8715222..8715395 145..318 100 -> Plus
X 8715452..8715772 319..639 100 -> Plus
X 8715835..8716026 640..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:13 Download gff for BS07611.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609052..8609189 7..144 97 -> Plus
arm_X 8609255..8609428 145..318 100 -> Plus
arm_X 8609485..8609805 319..639 100 -> Plus
arm_X 8609868..8610059 640..831 100   Plus

BS07611.complete Sequence

1469 bp (1469 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635918

> BS07611.complete
GAAGTTATCAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGC
GCATCTCGAAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGAT
GTCGAGCAGTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTT
CGCGGATAAACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGA
AGACCAAGGCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCC
AAGAAGCCCATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCA
AGATCCCATTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTA
ACATCGAGCTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCC
AACAGCGATCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGA
CAAGAAGAACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGG
ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGT
CGCGAACTGGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAA
AACTCACGCTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAAC
TCCCGCATCCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCG
CTTATTGATCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACA
GCACCTTAAGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGG
AGAGAGATCGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGAG
GAGGGTAGTGAGCTCGATGAGGATGTCCAAACGAATGGGAAGAAAAAGGA
GGACGATGATGAAAAGCCATATCACACAATCAACGCTCCCGTGGAGAACA
AAAAGAAGAGCAAGCAGGCTCGCCGCAACGAGCTCAAGCAAAAGGAGCTG
GCGCGTCAAACAGAGCTCAAGAGGAAGCTCAAGCAACAGACGGCTGACCT
GATACGCATCAAATCGATTCGCCACGAGCTAGACGATGAGGAGGAGGACC
TGAATGATCTAAAGAAGCGCCGCAAGCAGCGCGCCGAGAAGGCCAAGTTT
GAGCCGAAACGCCTGGGGCGTCACAAGTTCGAGGAGCCAGACCTAGACGT
AAATCTGCCCGAGGATATCGCCGGAAATCTGCGCAACGTGAAGACTGAGA
GCAGTCTGCTGAAGGACCGCTTCCACACGCTGCAACGCAACAATATGTTG
CCCACGACAAAGCTCGTCAGCCGCAAGAAGTCCAAGGTCAAGCGCTTCGA
GCGCAACTCCCACAAGGAGCCGGGCGTTAGCTATAATGACCTCAAGGAAC
GGCGCAGGGCGGCCGCCGCTGCAGCCAAGGCTACTGCCAATATCAAGATA
TAGAAGCTTTCTAGACCAT

BS07611.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1437 CG1785-PA 1..1437 17..1453 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-RA 1885 CG1785-RA 94..1530 17..1453 7185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8715835..8716251 640..1056 2085 100 Plus
X 23542271 X 8716313..8716710 1056..1453 1990 100 Plus
X 23542271 X 8715451..8715773 318..640 1615 100 Plus
X 23542271 X 8715221..8715395 144..318 875 100 Plus
X 23542271 X 8715029..8715156 17..144 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:42:42 has no hits.

BS07611.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:32 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 1..1437 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:33 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 69..1515 7..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:33 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 94..1530 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:32 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 69..1515 7..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:21 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
CG1785-RA 94..1530 17..1453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:21 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
X 8715452..8715772 319..639 100 -> Plus
X 8715029..8715156 17..144 100 -> Plus
X 8715222..8715395 145..318 100 -> Plus
X 8715835..8716251 640..1056 100 -> Plus
X 8716314..8716710 1057..1453 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:33 Download gff for BS07611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8609062..8609189 17..144 100 -> Plus
arm_X 8609255..8609428 145..318 100 -> Plus
arm_X 8609485..8609805 319..639 100 -> Plus
arm_X 8609868..8610284 640..1056 100 -> Plus
arm_X 8610347..8610743 1057..1453 100   Plus

BS07611.pep Sequence

Translation from 16 to 1452

> BS07611.pep
MTAVEPATKKKRISKKNKSAWRKTDIQDVEQFLEDQRQEERVGTFADKQD
EDLFVVDSSLPKTKATVLSVKQKRKLNAKKPMRSYQALENTSKVQDPIAK
RNHVRQKKNGRNIELEVCNPTKPRHRQANSDRAQYYVKLEQRLADKKNKK
LDVEKDIWQEVDFRDEIPGLKDEKGWISRELALHTAGNIGKKVVKTHASL
HHKTTKAKKFELPHPGMSYNPAPEDHQALIDQVVEREEGIIKKEQHLKRV
TTSMFSKVTPEERDRRRLNEMSQGMDEEEGSELDEDVQTNGKKKEDDDEK
PYHTINAPVENKKKSKQARRNELKQKELARQTELKRKLKQQTADLIRIKS
IRHELDDEEEDLNDLKKRRKQRAEKAKFEPKRLGRHKFEEPDLDVNLPED
IAGNLRNVKTESSLLKDRFHTLQRNNMLPTTKLVSRKKSKVKRFERNSHK
EPGVSYNDLKERRRAAAAAAKATANIKI*

BS07611.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1785-PA 478 CG1785-PA 1..478 1..478 2451 100 Plus