Clone Sequence Records
BS07613.3prime Sequence
938 bp (864 high quality bases) assembled on 2006-01-06
> BS07613.3prime
ATGGTCTAGAAAGCTTTCAAACGGACAAGGTCACTTGACTCCAAACAGTT
TTGTTGAGCACTTCAAAGGCCTGAATTTGTTCATTCAATTGGGCCAGTTT
ACTGAATATCAAATCGAACTTGGAATCAAAGTGCTGCACCACTGCTTTCA
GTTCATCGCGCAGTTTGTCCACCTCGCTGGGATCAGAACTACTTGTTATG
GGCGAGGACTCTACGCTGGCGGAGATTTCCGAAGAGGAGGAGGAGTCCAC
ACCCTCTTTTTCGGGCAAGCGATACATGCAGGCTATTCCGTGAAAGTATT
CCCCCGGAAAATCGGGATCGTAGTTATCCACGGTATAGGCAATGCCATTG
GCACGAATGAGCACATCCATTATGTTTCTCAGGCTGAAGCAGTTCCAGTT
ATTTCCATGAATATAGAAGTGCGTTAGTTGCGTGAGCGTGGGGAACGCGG
ATGGATCGATTTCCGTCAAATTATTGCCGGATATGTCAAGTTTCTGCAAA
TTTTGCATACCCTGCAACGCCTCCAGCGGCAGTTCCATCTGGCCCGTATT
CCGCAGCACCAGCATCTCCAGATGTGGCGTCCGCCAACCGTCGGGCAACT
GACCCAGGTTCGGATTGTCCGCCACATCCAGGTGCCGGAGTCTGGGCACG
CGGCTCAACGACGCCAGCTGAACCAGCGAGTTGTTGCGCAGCACCAAATG
CTCCAGTGCCTCGGAGGCGGGAAAGTACAGCTCGCGCACGCGATTGTCGC
TCAGATCGACATTCGTCACCGATCCGTACAAATTGACACGGTCCAGCGAG
CAATTGCGAGCGGTCAAATTGGTGGCGTTAATGTTCAGCAGTAGAACGAC
CAGCTCGGGGTTATTCGATAGATCCACATACTGCATCTGATGGTGTCGTC
CGCGGGATCGAAAGGCATACTCGGCCACCTCTCGCAGT
BS07613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 1665 | CG10824-RA | 744..1665 | 938..17 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 782..1704 | 938..16 | 4600 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21159389..21160311 | 16..938 | 4600 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:34:37 has no hits.
BS07613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:57 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 744..1665 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:52 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 744..1665 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:27 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 782..1711 | 7..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:24:33 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 782..1711 | 7..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:24:33 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21159382..21160311 | 7..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:27 Download gff for
BS07613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985104..16986033 | 7..938 | 99 | | Plus |
BS07613.5prime Sequence
949 bp (870 high quality bases) assembled on 2006-01-06
> BS07613.5prime
GAAGTTATCAGTCGACATGTACGTCCGGAATTGTCTGCCGTTCCTCTGCA
GCTATTTGCTGATCTCATTGGCGGCCACAGCTACTACGGATGAGGACGCG
GATGCTGATGTGGATAGTGGCTCATCCCGAATAGTGCTGGTCTCCAGCTT
GGAAGGTCATTGCCAGACGGAGGGCAAGGTGACCAGCTGCAGGGGCTTTG
AGTTTGCGGGAGAGGACGAGAAGGCCACCTTTGATCTGCCAACGGAGGTG
CGGATTGCCGAGGATGGCACCACCTACGAAGTGGGCGATGAGGAGCACTC
GCGAACCCTGATCTTCGAGAACTGCACCTTCACCAATTTTCCCCTGCGCT
TATTTTACACACTAGAGGTCAGTGAGCTGGACATGCGCGGCTGTGGCATC
CGCTTCATTTACTGGGAGAACTTCTCCATTGGTGCGGATAAGCTGGTGAT
TCTTCTGCTCAGCGATAATCACATCGAAGTGCTGCCCACGAAAACCTTCA
GGGGAGCAGGAAACTTGGAGTTTATCTTCCTGAATCGCAACAAACTAGGC
AAACTGCAGGCGGGTGCGTTTGATAATCTCCTGAAATTACAGTACCTGGA
TCTCACAGAGAATCGCCTGGAGGCTTTAGCCGCGGACGTATTTGCCGGAC
TGAAGAGTCTGCGGCACGTGGGACTGGCCGGTAATCAACTGACCACCATT
GAGAGCGATTTATTTGCCCACAATCCGGACCTTTTGTCGGTCGCAATGCA
GAACAATCGACTGCGAGAGGTGGGCGAGTATGCCTTTCGATCCCGCGGAC
GACACCATCAGATGCAGTATGTGGATCTATCGAATAACCCCGAGCTGGTC
GTTCTACTGCTGAACATTAACGCCACCAATTTGACCGCTCGCATTTGCTC
GCTGGACCGTGTCATTTTGTACGGATCGGTGACGAATGTCGATCTGAGC
BS07613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 1665 | CG10824-RA | 1..933 | 17..949 | 4615 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 39..971 | 17..949 | 4635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21160122..21161054 | 949..17 | 4635 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:02:32 has no hits.
BS07613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:58 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:54 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:48 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..971 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:30 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..971 | 17..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:30 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21160122..21161054 | 17..949 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:48 Download gff for
BS07613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985844..16986776 | 17..949 | 99 | | Minus |
BS07613.complete Sequence
1697 bp (1697 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635919
> BS07613.complete
GAAGTTATCAGTCGACATGTACGTCCGGAATTGTCTGCCGTTCCTCTGCA
GCTATTTGCTGATCTCATTGGCGGCCACAGCTACTACGGATGAGGACGCG
GATGCTGATGTGGATAGTGGCTCATCCCGAATAGTGCTGGTCTCCAGCTT
GGAAGGTCATTGCCAGACGGAGGGCAAGGTGACCAGCTGCAGGGGCTTTG
AGTTTGCGGGAGAGGACGAGAAGGCCACCTTTGATCTGCCAACGGAGGTG
CGGATTGCCGAGGATGGCACCACCTACGAAGTGGGCGATGAGGAGCACTC
GCGAACCCTGATCTTCGAGAACTGCACCTTCACCAATTTTCCCCTGCGCT
TATTTTACACACTAGAGGTCAGTGAGCTGGACATGCGCGGCTGTGGCATC
CGCTTCATTTACTGGGAGAACTTCTCCATTGGTGCGGATAAGCTGGTGAT
TCTTCTGCTCAGCGATAATCACATCGAAGTGCTGCCCACGAAAACCTTCA
GGGGAGCAGGAAACTTGGAGTTTATCTTCCTGAATCGCAACAAACTAGGC
AAACTGCAGGCGGGTGCGTTTGATAATCTCCTGAAATTACAGTACCTGGA
TCTCACAGAGAATCGCCTGGAGGCTTTAGCCGCGGACGTATTTGCCGGAC
TGAAGAGTCTGCGGCACGTGGGACTGGCCGGTAATCAACTGACCACCATT
GAGAGCGATTTATTTGCCCACAATCCGGACCTTTTGTCGGTCGCAATGCA
GAACAATCGACTGCGAGAGGTGGGCGAGTATGCCTTTCGATCCCGCGGAC
GACACCATCAGATGCAGTATGTGGATCTATCGAATAACCCCGAGCTGGTC
GTTCTACTGCTGAACATTAACGCCACCAATTTGACCGCTCGCAATTGCTC
GCTGGACCGTGTCAATTTGTACGGATCGGTGACGAATGTCGATCTGAGCG
ACAATCGCGTGCGCGAGCTGTACTTTCCCGCCTCCGAGGCACTGGAGCAT
TTGGTGCTGCGCAACAACTCGCTGGTTCAGCTGGCGTCGTTGAGCCGCGT
GCCCAGACTCCGGCACCTGGATGTGGCGGACAATCCGAACCTGGGTCAGT
TGCCCGACGGTTGGCGGACGCCACATCTGGAGATGCTGGTGCTGCGGAAT
ACGGGCCAGATGGAACTGCCGCTGGAGGCGTTGCAGGGTATGCAAAATTT
GCAGAAACTTGACATATCCGGCAATAATTTGACGGAAATCGATCCATCCG
CGTTCCCCACGCTCACGCAACTAACGCACTTCTATATTCATGGAAATAAC
TGGAACTGCTTCAGCCTGAGAAACATAATGGATGTGCTCATTCGTGCCAA
TGGCATTGCCTATACCGTGGATAACTACGATCCCGATTTTCCGGGGGAAT
ACTTTCACGGAATAGCCTGCATGTATCGCTTGCCCGAAAAAGAGGGTGTG
GACTCCTCCTCCTCTTCGGAAATCTCCGCCAGCGTAGAGTCCTCGCCCAT
AACAAGTAGTTCTGATCCCAGCGAGGTGGACAAACTGCGCGATGAACTGA
AAGCAGTGGTGCAGCACTTTGATTCCAAGTTCGATTTGATATTCAGTAAA
CTGGCCCAATTGAATGAACAAATTCAGGCCTTTGAAGTGCTCAACAAAAC
TGTTTGGAGTCAAGTGACCTTGTCCGTTTGAAAGCTTTCTAGACCAT
BS07613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1665 | CG10824-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-RA | 1855 | CG10824-RA | 39..1704 | 17..1682 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21159389..21161054 | 1682..17 | 8330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:51 has no hits.
BS07613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:17 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 1..1665 | 17..1681 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:16 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 40..1712 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:31 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..1702 | 17..1680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:17 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 40..1712 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:29 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10824-RA | 39..1702 | 17..1680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:29 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21159391..21161054 | 17..1680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:31 Download gff for
BS07613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16985113..16986776 | 17..1680 | 100 | | Minus |
BS07613.pep Sequence
Translation from 16 to 1680
> BS07613.pep
MYVRNCLPFLCSYLLISLAATATTDEDADADVDSGSSRIVLVSSLEGHCQ
TEGKVTSCRGFEFAGEDEKATFDLPTEVRIAEDGTTYEVGDEEHSRTLIF
ENCTFTNFPLRLFYTLEVSELDMRGCGIRFIYWENFSIGADKLVILLLSD
NHIEVLPTKTFRGAGNLEFIFLNRNKLGKLQAGAFDNLLKLQYLDLTENR
LEALAADVFAGLKSLRHVGLAGNQLTTIESDLFAHNPDLLSVAMQNNRLR
EVGEYAFRSRGRHHQMQYVDLSNNPELVVLLLNINATNLTARNCSLDRVN
LYGSVTNVDLSDNRVRELYFPASEALEHLVLRNNSLVQLASLSRVPRLRH
LDVADNPNLGQLPDGWRTPHLEMLVLRNTGQMELPLEALQGMQNLQKLDI
SGNNLTEIDPSAFPTLTQLTHFYIHGNNWNCFSLRNIMDVLIRANGIAYT
VDNYDPDFPGEYFHGIACMYRLPEKEGVDSSSSSEISASVESSPITSSSD
PSEVDKLRDELKAVVQHFDSKFDLIFSKLAQLNEQIQAFEVLNKTVWSQV
TLSV*
BS07613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10824-PA | 554 | CG10824-PA | 1..554 | 1..554 | 2855 | 100 | Plus |
| alrm-PA | 471 | CG11910-PA | 70..471 | 98..536 | 399 | 29.3 | Plus |
| CG5810-PA | 428 | CG5810-PA | 67..400 | 97..439 | 308 | 30.3 | Plus |
| CG4950-PB | 574 | CG4950-PB | 77..501 | 100..519 | 276 | 26.2 | Plus |
| CG4950-PC | 574 | CG4950-PC | 77..501 | 100..519 | 276 | 26.2 | Plus |
