Clone Sequence Records
BS07614.3prime Sequence
872 bp (832 high quality bases) assembled on 2006-01-06
> BS07614.3prime
ATGGTCTAGAAAGCTTCTAGATATCAAGCGTGTAGTACTTGCGGGATTCC
GTGGTGGCGATACTACGATTTTGCATGCAGTAAACGTCAACGATGTTCAT
TCGGTACTCCGGGTTGTACATCGAGTTCTTGATGTATTCCATTGGGTTTT
CCGGCTGCGGATATAGAGTGGCCAATCCGCGTCCAAAGGCGTACGAGAAT
ATGGCCTCGGCAATCTGCAGGCTGATGCACTGGATTTTCCTCATCGGCGG
ATACACATTCCGCTTCTCCAGGTCACAGGGCCAGACCAAGCTGGCCAAAC
GCTCGGCGGCCACACAGAATGCCTCATCCGGAATGTTTGTAAATCCGGCC
AACATCACGCCGCAACTTATTCCAGCCACCAAATAGCTACTGGTGCAATG
CCCCGGCTGATACCATTTGTTGGCATACTTCAGCGGGGGAAGCTTCGAGC
CCGAGATGAAGATGCAATGACCTTTTGTGTAGGAAAAAGCATCCTCCGCA
GAACATTCTGTTTGCTCGAGGGGTCTTGATAGTGCAAATATCACAGGTTG
ATCGGCGCTCTTCTCCATGGCACGCAGGACATCGGGGGTAAAGGTATTCG
GCAGCGATGACCCACCCACAAGGATGTTGGGCTTCAACTCCTGAATGGCC
TCGACCAGGTCGAGGATCGGATCCCTTTGGTTGGCAAATTCCAGAAGCTC
TTCGGGTATATCCTTCCTCCCCAGTACTACCAATCCATTGGCATCGAAGA
ACCAAATCTTCTCCCTGGCCTTCATTTCGATGAGACCCTCACGTTTCAGC
AGGACCATACACAATCGAGCCATGCCAATGTTAATGGCTTCGGCGCCGTA
GAACAGGAATACGTTGGAGGAG
BS07614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-PA | 1902 | CG7848-RA | 1047..1902 | 872..17 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-RA | 2103 | CG7848-RA | 1204..2059 | 872..17 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16433896..16434751 | 17..872 | 4280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:40:15 has no hits.
BS07614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:17:59 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-PA | 1047..1902 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:56 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-PA | 1047..1902 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:47:21 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 1204..2064 | 12..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:15 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 1204..2064 | 12..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:15 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16433891..16434751 | 12..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:47:21 Download gff for
BS07614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12321396..12322256 | 12..872 | 99 | | Plus |
BS07614.5prime Sequence
929 bp (912 high quality bases) assembled on 2006-01-06
> BS07614.5prime
GAAGTTATCAGTCGACATGCAGAAGTCGCCCAGGATGAGCCGCCTGTCGG
CCGAAAAAAAGAAAAAGAAAGACGATGAAAAGAAGGACAATGCGGAGGAA
GAGTTGCAGAAGAACAAGGAGCTAAAGTGCGTGAGCAACTACGACAAGAC
CGAGATACTCGACTATATGCCCCGATATATGGATACCTTCTGGAAAATGG
ACACGCGGCTGAGCGGATCCAAGGTGGATGGTCTATGGATGCTCAACCAG
TCCAACTACAACAAGGGACTGGCCTTCACACTGAACGAAAGGCGAGTGCT
ATCCATTCACGGACTACTTCCGGTGGCAGTGCGAACTATAGATGAACAGG
CGGAGATCTGCAGTAATCTCCTCGAGTCATTTACCAATAACGTGCAACAG
TATATATATCTGACATATCTGTCTCGTCGAAATAGGCGATTATTCTACTA
CCTTTTGCTGTCCAATCCCGATCGCTTTGTACCCATGACGGATGCCTCGG
GCTCGATAGATCTGCTAATGGTCCACAGGATGATCCATTCGATGGGCCAG
GGTCTTTACATTTGCATTAAGGATCTGGGGCACGTTTCGCAAATCCTGTC
TAATTGGCCATTCCGTTGCGTTCGCTGCCTGCTGGTGAGCAATGGTGCCT
CTGTTCTGAGTGTGGGTGACTTGGGTGTCGACGAGATGCCCATACTGTTC
TCCAACTTGCATCAGAATGTCGTCTATGGCGGCATTCATCCGGCTTATTG
CTTGGCCGTAATGCTGGATGTGGGTACCAATAATGAGGAACTGTTGAACG
ATCCGATGTATACGGGCCTGCGGGAGCGCCGTTGCTCAGAAAACTGTACG
ACCAGCTGTTCGAGGAATCACACTGTCCGTGATGCAGCAGTATGGACCAC
GTGCCCTGATCCTGTGCAAGGACTTTGAG
BS07614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-PA | 1902 | CG7848-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG7848-PA | 1902 | CG7848-RA | 854..915 | 868..929 | 310 | 100 | Plus |
| CG7848-PA | 1902 | CG7848-RA | 825..853 | 840..868 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-RA | 2103 | CG7848-RA | 157..1072 | 16..929 | 4530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16434883..16435798 | 929..16 | 4480 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:31:23 has no hits.
BS07614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:00 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-PA | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:09:57 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-PA | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:30:12 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 157..1072 | 16..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:39:52 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 157..1072 | 16..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:39:52 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16434883..16435798 | 16..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:30:12 Download gff for
BS07614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12322388..12323303 | 16..929 | 99 | | Minus |
BS07614.complete Sequence
1934 bp assembled on 2008-01-03
GenBank Submission: FJ635920
> BS07614.complete
GAAGTTATCAGTCGACATGCAGAAGTCGCCCAGGATGAGCCGCCTGTCGG
CCGAAAAAAAGAAAAAGAAAGACGATGAAAAGAAGGACAATGCGGAGGAA
GAGTTGCAGAAGAACAAGGAGCTAAAGTGCGTGAGCAACTACGACAAGAC
CGAGATACTCGACTATATGCCCCGATATATGGATACCTTCTGGAAAATGG
ACACGCGGCTGAGCGGATCCAAGGTGGATGGTCTATGGATGCTCAACCAG
TCCAACTACAACAAGGGACTGGCCTTCACACTGAACGAAAGGCGAGTGCT
ATCCATTCACGGACTACTTCCGGTGGCAGTGCGAACTATAGATGAACAGG
CGGAGATCTGCAGTAATCTCCTCGAGTCATTTACCAATAACGTGCAACAG
TATATATATCTGACATATCTGTCTCGTCGAAATAGGCGATTATTCTACTA
CCTTTTGCTGTCCAATCCCGATCGCTTTGTACCCATGACGGATGCCTCGG
GCTCGATAGATCTGCTAATGGTCCACAGGATGATCCATTCGATGGGCCAG
GGTCTTTACATTTGCATTAAGGATCTGGGGCACGTTTCGCAAATCCTGTC
TAATTGGCCATTCCGTTGCGTTCGCTGCCTGCTGGTGAGCAATGGTGCCT
CTGTTCTGAGTGTGGGTGACTTGGGTGTCGACGAGATGCCCATACTGTTC
TCCAACTTGCATCAGAATGTCGTCTATGGCGGCATTCATCCGGCTTATTG
CTTGGCCGTAATGCTGGATGTGGGTACCAATAATGAGGAACTGTTGAACG
ATCCGATGTATACGGGCCTGCGGGAGCGCCGTTGCTCAGAAAAACTGTAC
GACCAGCTGTTCGAGGAATTCACACTGTCCGTGATGCAGCAGTATGGACC
ACGTGCCCTGATCCTGTGCAAGGACTTTGAGGCCCAGAAGGCCAAGAAGC
AATTGGAGCTGTACCGCGAACGCCAGTGCATTGTCGACGTGGACTTTCAG
TGCTTCGCTGCAGTTGCTCTGGCCGGTGTGATAGTGTGCAACCGATTGAA
GAGAGTCTTCTTCTCCTCCAACGTATTCCTGTTCTACGGCGCCGAAGCCA
TTAACATTGGCATGGCTCGATTGTGTATGGTCCTGCTGAAACGTGAGGGT
CTCATCGAAATGAAGGCCAGGGAGAAGATTTGGTTCTTCGATGCCAATGG
ATTGGTAGTACTGGGGAGGAAGGATATACCCGAAGAGCTTCTGGAATTTG
CCAACCAAAGGGATCCGATCCTCGACCTGGTCGAGGCCATTCAGGAGTTG
AAGCCCAACATCCTTGTGGGTGGGTCATCGCTGCCGAATACCTTTACCCC
CGATGTCCTGCGTGCCATGGAGAAGAGCGCCGATCAACCTGTGATATTTG
CACTATCAAGACCCCTCGAGCAAACAGAATGTTCTGCGGAGGATGCTTTT
TCCTACACAAAAGGTCATTGCATCTTCATCTCGGGCTCGAAGCTTCCCCC
GCTGAAGTATGCCAACAAATGGTATCAGCCGGGGCATTGCACCAGTAGCT
ATTTGGTGGCTGGAATAAGTTGCGGCGTGATGTTGGCCGGATTTACAAAC
ATTCCGGATGAGGCATTCTGTGTGGCCGCCGAGCGTTTGGCCAGCTTGGT
CTGGCCCTGTGACCTGGAGAAGCGGAATGTGTATCCGCCGATGAGGAAAA
TCCAGTGCATCAGCCTGCAGATTGCCGAGGCCATATTCTCGTACGCCTTT
GGACGCGGATTGGCCACTCTATATCCGCAGCCGGAAAACCCAATGGAATA
CATCAAGAACTCGATGTACAACCCGGAGTACCGAATGAACATCGTTGACG
TTTACTGCATGCAAAATCGTAGTATCGCCACCACGGAATCCCGCAAGTAC
TACACGCTTGATATCTAGAAGCTTTCTAGACCAT
BS07614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-RA | 1902 | CG7848-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-RA | 2103 | CG7848-RA | 157..2059 | 16..1918 | 9515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16433896..16435798 | 1918..16 | 9515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:38:58 has no hits.
BS07614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:51 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 1..1902 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:04 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 158..2059 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:42 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 158..2059 | 17..1918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:51 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 157..2064 | 16..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:36 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 158..2059 | 17..1918 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:36 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16433896..16435797 | 17..1918 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:42 Download gff for
BS07614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12321401..12323302 | 17..1918 | 100 | | Minus |
BS07614.pep Sequence
Translation from 16 to 1917
> BS07614.pep
MQKSPRMSRLSAEKKKKKDDEKKDNAEEELQKNKELKCVSNYDKTEILDY
MPRYMDTFWKMDTRLSGSKVDGLWMLNQSNYNKGLAFTLNERRVLSIHGL
LPVAVRTIDEQAEICSNLLESFTNNVQQYIYLTYLSRRNRRLFYYLLLSN
PDRFVPMTDASGSIDLLMVHRMIHSMGQGLYICIKDLGHVSQILSNWPFR
CVRCLLVSNGASVLSVGDLGVDEMPILFSNLHQNVVYGGIHPAYCLAVML
DVGTNNEELLNDPMYTGLRERRCSEKLYDQLFEEFTLSVMQQYGPRALIL
CKDFEAQKAKKQLELYRERQCIVDVDFQCFAAVALAGVIVCNRLKRVFFS
SNVFLFYGAEAINIGMARLCMVLLKREGLIEMKAREKIWFFDANGLVVLG
RKDIPEELLEFANQRDPILDLVEAIQELKPNILVGGSSLPNTFTPDVLRA
MEKSADQPVIFALSRPLEQTECSAEDAFSYTKGHCIFISGSKLPPLKYAN
KWYQPGHCTSSYLVAGISCGVMLAGFTNIPDEAFCVAAERLASLVWPCDL
EKRNVYPPMRKIQCISLQIAEAIFSYAFGRGLATLYPQPENPMEYIKNSM
YNPEYRMNIVDVYCMQNRSIATTESRKYYTLDI*
BS07614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-PA | 633 | CG7848-PA | 1..633 | 1..633 | 3315 | 100 | Plus |
| Men-PA | 759 | CG10120-PA | 159..759 | 28..615 | 1102 | 38.4 | Plus |
| Men-PB | 763 | CG10120-PB | 163..763 | 28..615 | 1102 | 38.4 | Plus |
| Men-PC | 578 | CG10120-PC | 24..578 | 62..615 | 1098 | 40.3 | Plus |
| Men-b-PA | 617 | CG5889-PA | 49..592 | 68..609 | 987 | 36.4 | Plus |
