Clone Sequence Records
BS07616.3prime Sequence
892 bp (801 high quality bases) assembled on 2006-01-06
> BS07616.3prime
ATGGTCTAGAAAGCTTTTACACCGAATTAGATCTTATGCTAATCGGCCAA
ATCTTCAGTTCAGCCTGAAGCAGTTGCTTTTTGTCCAGGATCCTATCTCT
TTTTCGTTTCGATCGGCTCTGCAACTGCAATTCATGATCCTTTTGTGAAG
AAAAGGGTTTGGGATATGGAGCTACAGCCTGAGCCCTTTTTCTGCGATAT
CTTAACATGTTTGTAATGGCATTTATGCGCAAATCAGGCTGAATGGCGTG
TCTACCACTTCGAGGTTGCTGTTGCAAAGACTTTGGCTGTTCCATATTTT
CATTTTGTACATTCAGAGAAAAGCTGATGACATTTGGAGTCCCAGCGACA
CCGTGATTCTTTGGCTTGGTGCAACATGGAAGTTTTCTTGTCGTACTTTT
GGTAGCACGCGTTGTCAAAGGTTTTTGGGTGGTAGTCTTGCCGATTGGAG
GCTTAGTTGCCTTCGTTTTTGGAGCCAAAGATGGTTTAACAGTGCTTGTT
GTTGTAGATTCCCGCTCCTCGTTCTTAACATCGACGGATATCGAATCCTC
CTCTTCATTTTTATTGGAGTCACAAGCCTCGGTAGTCGCAAACGCTTCGC
ATTCTCCTTTTCCCTCATTTTGATCCACTTCAGCGCAATTCATTGCCTCC
TGCGGTCGCACCTGTTGTTGCATCTGCTGTCGCTGGCCAAAGAACTCGGA
CAACTGTTGCAGCAACTCGAGCTGCTCGGCAGTTGGCGCCGGATCGTGTG
TCTCCTGTCGTTCCTGCTGCTTTGGCAATGGCACAAATGGCGGCTGGAAT
AGATGAAAGGCGGGGAACTCCTGGTTATATCGATTCAACTTGGCCGACGG
CATCTGGGATTGAAGCTGCTCTGAGCTATCGCTGATGGCCTC
BS07616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 1197 | CG33278-RA | 349..1197 | 865..17 | 4245 | 100 | Minus |
| CG33278-PA | 1197 | CG33278-RA | 321..348 | 892..865 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 377..1253 | 892..17 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7451229..7452105 | 892..17 | 4335 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:59:00 has no hits.
BS07616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:03 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 321..1197 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:03 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 321..1197 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:51:03 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 377..1258 | 11..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:45 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 377..1258 | 11..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:45 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7451229..7452110 | 11..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:51:03 Download gff for
BS07616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444329..7445210 | 11..892 | 99 | | Minus |
BS07616.5prime Sequence
860 bp (765 high quality bases) assembled on 2006-01-06
> BS07616.5prime
GAAGTTATCAGTCGACATGAGTCACGTTGCCACTCTTTTGGCCATTGCAA
GCGTATTCAGTGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTG
GCGGAAATCCCTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAAT
ACTTAGCCTGAAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACG
CCACCAGTCAGGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCT
GGTATGCGATATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCC
GTTGCAGGAGATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGA
TAGCTCAGAGCAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGA
TATAACCAGGAGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCC
ATTGCCAAAGCAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTG
CCGAGCAGCTCGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGA
CAGCAGATGCAACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGA
AGTGGATCAAAATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCG
AGGCTTGTGACTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGAT
GTTAAGAACGAGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATC
TTTGGCTCCAAAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCA
CCCAAAAACCTTTGACAACGCGTGCTACCAAAAGTACGACAAGAAAACTT
CCATGTTGCA
BS07616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 1197 | CG33278-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 57..900 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7450909..7451752 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:11:20 has no hits.
BS07616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:04 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:05 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:25:14 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..899 | 10..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:34 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..899 | 10..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:34 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7450903..7451751 | 10..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:25:14 Download gff for
BS07616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444003..7444851 | 10..859 | 99 | | Plus |
BS07616.complete Sequence
1229 bp (1229 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635921
> BS07616.complete
GAAGTTATCAGTCGACATGAGTCACGTTGCCACTCTTTTGGCCATTGCAA
GCGTATTCAGTGTCGTTCGGGGTCAACAGCAAGTTATGCCAAAGCCCGTG
GCGGAAATCCCTTCACCGCAGCCTCTGCCCGCGGATTACGTGAAGGGAAT
ACTTAGCCTGAAGAGCAGTCTGCTGACCAACAAGCAGGCCTTGGGTTACG
CCACCAGTCAGGAGGTGAACGGCCCCGCTTCCGTATCCGGAATCAGACCT
GGTATGCGATATACACAGCAGTTGGACGTACAGCAGACGCAAAGCCAGCC
GTTGCAGGAGATTCAGGTTGAACCCGTTGCCAATCTGAGGCCATCAGCGA
TAGCTCAGAGCAGCCTTCAATCCCAGATGCCGTCGGCCAAGTTGAATCGA
TATAACCAGGAGTTCCCCGCCTTTCATCTATTCCAGCCGCCATTTGTGCC
ATTGCCAAAGCAGCAGGAACGACAGGAGACACACGATCCGGCGCCAACTG
CCGAGCAGCTCGAGTTGCTGCAACAGTTGTCCGAGTTCTTTGGCCAGCGA
CAGCAGATGCAACAACAGGTGCGACCGCAGGAGGCAATGAATTGCGCTGA
AGTGGATCAAAATGAGGGAAAAGGAGAATGCGAAGCGTTTGCGACTACCG
AGGCTTGTGACTCCAATAAAAATGAAGAGGAGGATTCGATATCCGTCGAT
GTTAAGAACGAGGAGCGGGAATCTACAACAACAAGCACTGTTAAACCATC
TTTGGCTCCAAAAACGAAGGCAACTAAGCCTCCAATCGGCAAGACTACCA
CCCAAAAACCTTTGACAACGCGTGCTACCAAAAGTACGACAAGAAAACTT
CCATGTTGCACCAAGCCAAAGAATCACGGTGTCGCTGGGACTCCAAATGT
CATCAGCTTTTCTCTGAATGTACAAAATGAAAATATGGAACAGCCAAAGT
CTTTGCAACAGCAACCTCGAAGTGGTAGACACGCCATTCAGCCTGATTTG
CGCATAAATGCCATTACAAACATGTTAAGATATCGCAGAAAAAGGGCTCA
GGCTGTAGCTCCATATCCCAAACCCTTTTCTTCACAAAAGGATCATGAAT
TGCAGTTGCAGAGCCGATCGAAACGAAAAAGAGATAGGATCCTGGACAAA
AAGCAACTGCTTCAGGCTGAACTGAAGATTTGGCCGATTAGCATAAGATC
TAATTCGGTGTAAAAGCTTTCTAGACCAT
BS07616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1197 | CG33278-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-RA | 1307 | CG33278-RA | 57..1253 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7450909..7452105 | 17..1213 | 5985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:36:51 has no hits.
BS07616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:18 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:17 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..1258 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:04 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 57..1251 | 17..1211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:19 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 51..1258 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:55 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33278-RA | 57..1251 | 17..1211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:55 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7450909..7452103 | 17..1211 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:04 Download gff for
BS07616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7444009..7445203 | 17..1211 | 100 | | Plus |
BS07616.pep Sequence
Translation from 16 to 1212
> BS07616.pep
MSHVATLLAIASVFSVVRGQQQVMPKPVAEIPSPQPLPADYVKGILSLKS
SLLTNKQALGYATSQEVNGPASVSGIRPGMRYTQQLDVQQTQSQPLQEIQ
VEPVANLRPSAIAQSSLQSQMPSAKLNRYNQEFPAFHLFQPPFVPLPKQQ
ERQETHDPAPTAEQLELLQQLSEFFGQRQQMQQQVRPQEAMNCAEVDQNE
GKGECEAFATTEACDSNKNEEEDSISVDVKNEERESTTTSTVKPSLAPKT
KATKPPIGKTTTQKPLTTRATKSTTRKLPCCTKPKNHGVAGTPNVISFSL
NVQNENMEQPKSLQQQPRSGRHAIQPDLRINAITNMLRYRRKRAQAVAPY
PKPFSSQKDHELQLQSRSKRKRDRILDKKQLLQAELKIWPISIRSNSV*
BS07616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33278-PA | 398 | CG33278-PA | 1..398 | 1..398 | 2032 | 100 | Plus |
