Clone Sequence Records
BS07619.3prime Sequence
983 bp (835 high quality bases) assembled on 2006-01-06
> BS07619.3prime
ATGGTCTAGAAAGCTTCTACAGCAATCCGCAGCTGGTAAAAAGCAGACCC
CGGCTGAGCTTTCCGTTCTTAGTGCCGTAACTCTGAATGCACTCGCATAT
CTTGCTGCCCTTCACAATCCGTCCGAATCCCACGCGGGATCCATTGACCA
CGGTAAGCGGCTTGAACGAGATGGCGAAGGACAGGTGGTGGGTGAATCCC
GTGACGTAAGCTTTGCTGAAGGATAATACGTAGCTGGAGGCCCCGTGGTC
AATAACTTTGGCGTCGTACTCCAATGGCTGGTGGAGTAGCGAGTCCGACG
ACAGCATCAAATCGGTTTCCAGCCAGAGATTGGGGAACAGTCGTTTGACC
ATAAACTTCGAGTGCTGATTGCACATGCAGGACTTGATCAGCTGCAGCAC
CACCAGCGGAGCAGCCTCTGTGTACAGCTGGACCACAAACCTGCCCAGTG
GTCGGGCATCTTTGAGATAGAGGTCAAAGTAGATACGCGGTCGAAAGAGG
CGGCGTAGTTCGGCATCCGACTTGGGTAGCGGGATGTTGAAGGCCTCGTA
CTTGGCCATTGCTTGGGGCGGCAACTCCAGTGGAGCGACGGGCGTCGAGC
TCCTGCCCTCCCGCATCCGCTTGTCCGACAGACCGGAGTCCACTTCGCTG
TTTACCTCCAGAATGCGTCGACCGAAGTCGCGATTATCGCGCTCCAGTTT
CTCCAGGGTGAGCAGGGCCATGGGAATACTGGAGACGGCGTGCACCGTAT
CGTATCGAAACGGATTGATGGCTCCGTGGGTGCGCATCGTCCGCGAAATC
TCCACCAGCAGCTGGATGTTGGCCTTGGTGCGCTTCATAAATGTTTTGCG
CTCGTCTCGGAGGTTGTTCACTCCGGTGATGCGGGCCGCCTGAAAGTTGG
GCGCTTCGGCGTCCACCGTGCTGATCGCCCCCCTGATCCGCTCACGGTGC
TGGTGCCACATCTTCATGTGAATCCCCATAAGC
BS07619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 1110 | CG30350-RA | 281..1110 | 846..17 | 4150 | 100 | Minus |
| CG30350-PA | 1110 | CG30350-RA | 144..276 | 983..851 | 590 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 265..1231 | 983..17 | 4745 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826655..8827621 | 983..17 | 4730 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:56:26 has no hits.
BS07619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:09 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 144..1110 | 17..983 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:12 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 144..1110 | 17..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:59:26 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 265..1231 | 17..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:54 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 265..1231 | 17..983 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:54 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826655..8827621 | 17..983 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:59:26 Download gff for
BS07619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714160..4715126 | 17..983 | 99 | | Minus |
BS07619.5prime Sequence
963 bp (806 high quality bases) assembled on 2006-01-06
> BS07619.5prime
GAAGTTATCAGTCGACATGGCTGATTTCCCGATGTGTGTGACCCCGTCGC
AGCGAGAGTTGGCTCAGCTCACGGAGCAGGAGCGCCTGACCGCCCAGCTG
AAGGTAAAGGAGCGCAAGAAGGCGGCCAAGGCCAAGCCGAAGAAGATCCT
GGGCGGCCTGCTTATGGTGAATCACATGAAGATGTGGCACCAGCACCGTG
AGCGGATCAAGGGGGCGATCAGCACGGTGGACGCCGAAGCGCCCAACTTT
CAGGCGGCCCGCATCACCGGAGTGAACAACCTCCGAGACGAGGCGCAAAC
ATTTATGAAGCGCACCAAGGCCAACATCCAGCTGCTGGTGGAGATTTCGC
GGACGATGCGCACCCACGGAGCCATCAATCCGTTTCGATACGATACGGTG
CACGCCGTCTCCAGTATTCCCATGGCCCTGCTCACCCTGGAGAAACTGGA
GCGCGATAATCGCGACTTCGGTCGACGCATTCTGGAGGTAAACAGCGAAG
TGGACTCCGGTCTGTCGGACAAGCGGATGCGGGAGGGCAGGAGCTCGACG
CCCGTCGCTCCACTGGAGTTGCCGCCCCAAGCAATGGCCAAGTACGAGGC
CTTCAACATCCCGCTACCCAAGTCGGATGCCGAACTACGCCGCCTCTTTC
GACCGCGTATCTACTTTGACCTCTATCTCAAAGATGCCCGACCACTGGGC
AGGTTTGTGGTCCAGCTGTACACAGAGGCTGCTCCGCTGGTGGTGCTGCA
GCTGATCAAGTCCTGCATGTGCAATCAGCACTCGAAGTTTATGGTCAAAC
GACTGTTCCCTCATCTCTGGCTGGAAACCGATTTGATGCTGTCGTCGGAC
TCGCTACTCCACCAGCCATTGGAGTACGACGCCCAAGTTATTTGACACGG
GGCCTCCAGCTACGTATTATCCTTCAGCAAAGCTTACGTCACGGGGATTC
ACCCACCACCTGT
BS07619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 1110 | CG30350-RA | 1..876 | 17..892 | 4280 | 99.5 | Plus |
| CG30350-PA | 1110 | CG30350-RA | 880..929 | 896..945 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 122..1067 | 17..963 | 4605 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826512..8827457 | 17..963 | 4580 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:25:49 has no hits.
BS07619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:10 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 1..946 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:14 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-PA | 1..946 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:55 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1067 | 9..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:49 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1067 | 9..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:49 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826504..8827457 | 9..963 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:55 Download gff for
BS07619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714009..4714962 | 9..963 | 98 | | Plus |
BS07619.complete Sequence
1142 bp (1142 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635922
> BS07619.complete
GAAGTTATCAGTCGACATGGCTGATTTCCCGATGTGTGTGACCCCGTCGC
AGCGAGAGTTGGCTCAGCTCACGGAGCAGGAGCGCCTGACCGCCCAGCTG
AAGGTAAAGGAGCGCAAGAAGGCGGCCAAGGCCAAGCCGAAGAAGATCCT
GGGCGGCCTGCTTATGGTGAATCACATGAAGATGTGGCACCAGCACCGTG
AGCGGATCAAGGGGGCGATCAGCACGGTGGACGCCGAAGCGCCCAACTTT
CAGGCGGCCCGCATCACCGGAGTGAACAACCTCCGAGACGAGGCGCAAAC
ATTTATGAAGCGCACCAAGGCCAACATCCAGCTGCTGGTGGAGATTTCGC
GGACGATGCGCACCCACGGAGCCATCAATCCGTTTCGATACGATACGGTG
CACGCCGTCTCCAGTATTCCCATGGCCCTGCTCACCCTGGAGAAACTGGA
GCGCGATAATCGCGACTTCGGTCGACGCATTCTGGAGGTAAACAGCGAAG
TGGACTCCGGTCTGTCGGACAAGCGGATGCGGGAGGGCAGGAGCTCGACG
CCCGTCGCTCCACTGGAGTTGCCGCCCCAAGCAATGGCCAAGTACGAGGC
CTTCAACATCCCGCTACCCAAGTCGGATGCCGAACTACGCCGCCTCTTTC
GACCGCGTATCTACTTTGACCTCTATCTCAAAGATGCCCGACCACTGGGC
AGGTTTGTGGTCCAGCTGTACACAGAGGCTGCTCCGCTGGTGGTGCTGCA
GCTGATCAAGTCCTGCATGTGCAATCAGCACTCGAAGTTTATGGTCAAAC
GACTGTTCCCCAATCTCTGGCTGGAAACCGATTTGATGCTGTCGTCGGAC
TCGCTACTCCACCAGCCATTGGAGTACGACGCCAAAGTTATTGACCACGG
GGCCTCCAGCTACGTATTATCCTTCAGCAAAGCTTACGTCACGGGATTCA
CCCACCACCTGTCCTTCGCCATCTCGTTCAAGCCGCTTACCGTGGTCAAT
GGATCCCGCGTGGGATTCGGACGGATTGTGAAGGGCAGCAAGATATGCGA
GTGCATTCAGAGTTACGGCACTAAGAACGGAAAGCTCAGCCGGGGTCTGC
TTTTTACCAGCTGCGGATTGCTGTAGAAGCTTTCTAGACCAT
BS07619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1110 | CG30350-PA | 1..1110 | 17..1126 | 5535 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-RA | 1365 | CG30350-RA | 122..1231 | 17..1126 | 5535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8826512..8827621 | 17..1126 | 5535 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:32:11 has no hits.
BS07619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:06 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 1..1110 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:00 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1231 | 9..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:09 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 122..1231 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:06 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 114..1231 | 9..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:14 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30350-RA | 122..1231 | 17..1126 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:14 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8826512..8827621 | 17..1126 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:09 Download gff for
BS07619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4714017..4715126 | 17..1126 | 99 | | Plus |
BS07619.pep Sequence
Translation from 16 to 1125
> BS07619.pep
MADFPMCVTPSQRELAQLTEQERLTAQLKVKERKKAAKAKPKKILGGLLM
VNHMKMWHQHRERIKGAISTVDAEAPNFQAARITGVNNLRDEAQTFMKRT
KANIQLLVEISRTMRTHGAINPFRYDTVHAVSSIPMALLTLEKLERDNRD
FGRRILEVNSEVDSGLSDKRMREGRSSTPVAPLELPPQAMAKYEAFNIPL
PKSDAELRRLFRPRIYFDLYLKDARPLGRFVVQLYTEAAPLVVLQLIKSC
MCNQHSKFMVKRLFPNLWLETDLMLSSDSLLHQPLEYDAKVIDHGASSYV
LSFSKAYVTGFTHHLSFAISFKPLTVVNGSRVGFGRIVKGSKICECIQSY
GTKNGKLSRGLLFTSCGLL*
BS07619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30350-PA | 369 | CG30350-PA | 1..369 | 1..369 | 1890 | 100 | Plus |
| CG15767-PA | 370 | CG15767-PA | 38..370 | 62..369 | 542 | 37.3 | Plus |
| CG32236-PA | 385 | CG32236-PA | 75..385 | 48..369 | 301 | 28.3 | Plus |
| CG3492-PA | 404 | CG3492-PA | 178..404 | 149..369 | 291 | 33.5 | Plus |
