Clone Sequence Records
BS07621.3prime Sequence
904 bp (830 high quality bases) assembled on 2006-01-06
> BS07621.3prime
ATGGTCTAGAAAGCTTCTAGAAGTATTCGCCAGCAGCCTTGTACGATCTC
GGGCAATTTTGTTCGGCATACAAGGCGTAGGCGTTCTTAGATCCTATTTT
GATAGGCAGCTTGCTCGAGTGCTTATTCCACACATGCACTACATACGAGT
CCTTGCACCGGGCGATTGTCTCTTCTAAGTTTTCCGGCTCAAAGAAGTCT
CGCCACTGCTTCCACGGTACGGCGTAAAAGGCGCCCCGTCCGAATACTTT
GAAGCCCATGCAGCGCTTGGGGTCCTCTCGCATCAGAGCAATGTCTTTGG
TGCCACATATCTTCTGAGCCACACGGGTTATCACCCCTGGGCCATTGTTG
CCCCAGTCCCCGCCGTTAAAGTTGTGCTGAAAGTCGCGCAAACAGGACGC
GGCGATCTCGTGGCCAAAGCCAGTGGCTGCCAGGTTCATTACGCCAGCTG
CCAAATGGGTGTTGGACTCAGCACCTGTGTAATTGGGCGGCACCTTCTCC
ATGTTGCGAAGCACCACCACATCCATGTCCAGATAAAGACCGCCATACCG
ATAGAGGGTAAGGTAGCGGAGAAAGTCTGATATGTGCGAGAACAAATATT
TTGACCGCGACAAACGACCATCTTTGAGCCACTCCTCCATGGGCGTGCCA
GATGCGTAACTCTCGAGATTCAGTCGACGTAGATGGACATTGCTGTAACT
GAGAATGGCCTCCAACAATGGTTGGGGATGGCTTTTGTTGTTGGAGATTC
GATAGGTGGGGCCAGCGAACAGGACGAACACTTGGAAATTCGGATTATGC
ATCGCTGCCGACTCGATTGCGCATGCCTGGCGGGCAGTGACCTTCAGCGT
CTCCAGCTGTCTGTTCTCGGATAGGCGGCAGCTGGTCTCGTGAAAGAAGA
TACT
BS07621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17223-PA | 1110 | alpha4GT1-RA | 223..1110 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 350..1237 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3021786..3022368 | 17..599 | 2915 | 100 | Plus |
| 2L | 23513712 | 2L | 3022423..3022727 | 600..904 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:34:23 has no hits.
BS07621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:13 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 223..1110 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:18 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 223..1110 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:52:25 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 350..1237 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:23:41 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 350..1237 | 17..904 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:23:41 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3022423..3022727 | 600..904 | 100 | | Plus |
| 2L | 3021786..3022368 | 17..599 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:52:25 Download gff for
BS07621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3021786..3022368 | 17..599 | 100 | <- | Plus |
| arm_2L | 3022423..3022727 | 600..904 | 100 | | Plus |
BS07621.5prime Sequence
889 bp (826 high quality bases) assembled on 2006-01-06
> BS07621.5prime
GAAGTTATCAGTCGACATGCTCCTCTGGTTGCCCATTGCGGTGGCACGCA
GGATGTTCATCATCCTCGTCCTAATGGTAATTGGAGGCCTCTTCTACATC
TACACTTCGGAAAATAAATACCACTCATGCTTTATGGAGGGCCAAGTACT
GGCAACTCAGCAGGCGCTAACTGCAGATGGCGAAACAAATCTATTGGGCG
ACGTCCTCCAGGCGGATCCCAAACCCTCGCCCGGAAACAGTATCTTCTTT
CACGAGACCAGCTGCCGCCTATCCGAGAACAGACAGCTGGAGACGCTGAA
GGTCACTGCCCGCCAGGCATGCGCAATCGAGTCGGCAGCGATGCATAATC
CGAATTTCCAAGTGTTCGTCCTGTTCGCTGGCCCCACCTATCGAATCTCC
AACAACAAAAGCCATCCCCAACCATTGTTGGAGGCCATTCTCAGTTACAG
CAATGTCCATCTACGTCGACTGAATCTCGAGAGTTACGCATCTGGCACGC
CCATGGAGGAGTGGCTCAAAGATGGTCGTTTGTCGCGGTCAAAATATTTG
TTCTCGCACATATCAGACTTTCTCCGCTACCTTACCCTCTATCGGTATGG
CGGTCTTTATCTGGACATGGATGTGGTGGTGCTTCGCAACATGGAGAAGG
TGCCGCCCAATTACACAGGTGCTGAGTCCAACACCCATTTGGCAGCTGGC
GTAATGAACCTGGCAGCCACTGGCTTTGGCCACGAGATCGCCGCGTCCTG
TTTGCGCGACTTTCAGCACAACTTTAACGGCGGGGACTGGGGCAACAATG
GCCCAGGGGTGATAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGAC
ATTGCTCTGATGCGAGAGGACCCCAAGCGCTGCATGGGC
BS07621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17223-PA | 1110 | alpha4GT1-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 127..1000 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3022423..3022950 | 543..16 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 3022023..3022368 | 889..544 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:18:53 has no hits.
BS07621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:14 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:20 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:31:23 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..1000 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:01 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..1000 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:01 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3022023..3022368 | 544..889 | 100 | <- | Minus |
| 2L | 3022423..3022954 | 9..543 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:31:23 Download gff for
BS07621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3022023..3022368 | 544..889 | 100 | <- | Minus |
| arm_2L | 3022423..3022954 | 9..543 | 99 | | Minus |
BS07621.complete Sequence
1142 bp (1142 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635923
> BS07621.complete
GAAGTTATCAGTCGACATGCTCCTCTGGTTGCCCATTGCGGTGGCACGCA
GGATGTTCATCATCCTCGTCCTAATGGTAATTGGAGGCCTCTTCTACATC
TACACTTCGGAAAATAAATACCACTCATGCTTTATGGAGGGCCAAGTACT
GGCAACTCAGCAGGCGCTAACTGCAGATGGCGAAACAAATCTATTGGGCG
ACGTCCTCCAGGCGGATCCCAAACCCTCGCCCGGAAACAGTATCTTCTTT
CACGAGACCAGCTGCCGCCTATCCGAGAACAGACAGCTGGAGACGCTGAA
GGTCACTGCCCGCCAGGCATGCGCAATCGAGTCGGCAGCGATGCATAATC
CGAATTTCCAAGTGTTCGTCCTGTTCGCTGGCCCCACCTATCGAATCTCC
AACAACAAAAGCCATCCCCAACCATTGTTGGAGGCCATTCTCAGTTACAG
CAATGTCCATCTACGTCGACTGAATCTCGAGAGTTACGCATCTGGCACGC
CCATGGAGGAGTGGCTCAAAGATGGTCGTTTGTCGCGGTCAAAATATTTG
TTCTCGCACATATCAGACTTTCTCCGCTACCTTACCCTCTATCGGTATGG
CGGTCTTTATCTGGACATGGATGTGGTGGTGCTTCGCAACATGGAGAAGG
TGCCGCCCAATTACACAGGTGCTGAGTCCAACACCCATTTGGCAGCTGGC
GTAATGAACCTGGCAGCCACTGGCTTTGGCCACGAGATCGCCGCGTCCTG
TTTGCGCGACTTTCAGCACAACTTTAACGGCGGGGACTGGGGCAACAATG
GCCCAGGGGTGATAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGAC
ATTGCTCTGATGCGAGAGGACCCCAAGCGCTGCATGGGCTTCAAAGTATT
CGGACGGGGCGCCTTTTACGCCGTACCGTGGAAGCAGTGGCGAGACTTCT
TTGAGCCGGAAAACTTAGAAGAGACAATCGCCCGGTGCAAGGACTCGTAT
GTAGTGCATGTGTGGAATAAGCACTCGAGCAAGCTGCCTATCAAAATAGG
ATCTAAGAACGCCTACGCCTTGTATGCCGAACAAAATTGCCCGAGATCGT
ACAAGGCTGCTGGCGAATACTTCTAGAAGCTTTCTAGACCAT
BS07621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1110 | CG17223-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 127..1237 | 16..1126 | 5555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3021786..3022368 | 1126..544 | 2915 | 100 | Minus |
| 2L | 23513712 | 2L | 3022423..3022950 | 543..16 | 2640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:08:24 has no hits.
BS07621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:07 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:02 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 130..1244 | 9..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:17 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 128..1237 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:07 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 130..1244 | 9..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:45 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 128..1237 | 17..1126 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:45 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3021786..3022368 | 544..1126 | 100 | <- | Minus |
| 2L | 3022423..3022949 | 17..543 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:17 Download gff for
BS07621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3021786..3022368 | 544..1126 | 100 | <- | Minus |
| arm_2L | 3022423..3022949 | 17..543 | 100 | | Minus |
BS07621.pep Sequence
Translation from 16 to 1125
> BS07621.pep
MLLWLPIAVARRMFIILVLMVIGGLFYIYTSENKYHSCFMEGQVLATQQA
LTADGETNLLGDVLQADPKPSPGNSIFFHETSCRLSENRQLETLKVTARQ
ACAIESAAMHNPNFQVFVLFAGPTYRISNNKSHPQPLLEAILSYSNVHLR
RLNLESYASGTPMEEWLKDGRLSRSKYLFSHISDFLRYLTLYRYGGLYLD
MDVVVLRNMEKVPPNYTGAESNTHLAAGVMNLAATGFGHEIAASCLRDFQ
HNFNGGDWGNNGPGVITRVAQKICGTKDIALMREDPKRCMGFKVFGRGAF
YAVPWKQWRDFFEPENLEETIARCKDSYVVHVWNKHSSKLPIKIGSKNAY
ALYAEQNCPRSYKAAGEYF*
BS07621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-PA | 369 | CG17223-PA | 1..369 | 1..369 | 1966 | 100 | Plus |
| alpha4GT2-PB | 395 | CG5878-PB | 93..395 | 62..369 | 886 | 53.9 | Plus |
