Clone Sequence Records
BS07624.3prime Sequence
882 bp (835 high quality bases) assembled on 2006-01-06
> BS07624.3prime
ATGGTCTAGAAAGCTTTCAGTTAAGCACCTTATAGGGATTGAGGATGCTG
TTGGGGTCCAGCAGCTTCTTCATCTCGCGCATGTAGCCAATGGCCACCGG
GTCCTTGGAGTAGTGCAGGTAGTCCTTCTTCAGGAAGCCAATGCCGTGCT
CCGCACTAATGCTGCCCTTCAGCTTGGAGGTGTACTCGTAGACGAAGGGT
TCGACCCGCTTGTAGATCTCGCCGTTAAACTCCTCGCAGGAGACGTTCAG
GTGCAGATTAGAGTCCCCCAGATGGCCGTATCCGCAGACAACTGTGGCCA
GGGGACCGCACCTCTCTCGCATCACGTCCACAATGTTGTAGAAGTCCCGC
AGAGGCAGCGAGATGTCGTACTTGAAGCAGAAGCTCTTCTCGATCAGACC
CAGCGGCACCATTTCGCGGATCTTCCAGATCTCCTGCACCTTGCCGGGAT
CACCGGTTACGGTGCCATCCTGGATCTCGCCACGCTCCATACCGTCCCCA
ATGAACTGGTTGATCTTCTCCTCGTCGTGGTCACCGTTGCTGCCCGAGGT
CTCGATGAGCATGTAGAAGGGAAATCCCGAAATGGGGGAGTTCAGGAACT
TGAACTGCTCGAGGGCGGTGTTCAAGGCCCGCTCGTCAATCAGCTCGCAG
GAGCTTAGAATCTCGCCCAGATTACGCTTGGCACTGACAAAAGTCTTCAG
CACATCGTCGAAGGAGTTCAGGCCGATGAAGGCCACGTTCACCGCTCGCG
AGGAATGGGGGCAGAGCATCGAAAGCTTCGTGACCACGCCCAGAGTGCCC
TCGGATCCTATGAACAAGTGCTTCATGTGGTAGCCGGTGTTGTCCTTCTT
GAAGTTGGACATAAGGTCCAGCACCTGAACGG
BS07624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PB | 1602 | CG3835-RB | 741..1602 | 878..17 | 4310 | 100 | Minus |
CG3835-PC | 1602 | CG3835-RC | 741..1602 | 878..17 | 4310 | 100 | Minus |
CG3835-PA | 1602 | CG3835-RA | 741..1602 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 1045..1916 | 882..11 | 4330 | 99.8 | Minus |
CG3835-RC | 1966 | CG3835-RC | 1024..1895 | 882..11 | 4330 | 99.8 | Minus |
CG3835-RB | 1862 | CG3835-RB | 920..1791 | 882..11 | 4330 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2144287..2144866 | 590..11 | 2885 | 99.8 | Minus |
X | 23542271 | X | 2143929..2144220 | 882..591 | 1445 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:07:08 has no hits.
BS07624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:19 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PC | 737..1602 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:26 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PA | 737..1602 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:41 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 920..1797 | 1..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:18 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 920..1797 | 1..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:18 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143929..2144220 | 591..882 | 99 | -> | Minus |
X | 2144287..2144872 | 1..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:41 Download gff for
BS07624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037962..2038253 | 591..882 | 99 | -> | Minus |
arm_X | 2038320..2038905 | 1..590 | 99 | | Minus |
BS07624.5prime Sequence
891 bp (785 high quality bases) assembled on 2006-01-06
> BS07624.5prime
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGC
BS07624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PB | 1602 | CG3835-RB | 1..875 | 17..891 | 4375 | 100 | Plus |
CG3835-PC | 1602 | CG3835-RC | 1..875 | 17..891 | 4375 | 100 | Plus |
CG3835-PA | 1602 | CG3835-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 309..1183 | 17..891 | 4375 | 100 | Plus |
CG3835-RC | 1966 | CG3835-RC | 288..1162 | 17..891 | 4375 | 100 | Plus |
CG3835-RB | 1862 | CG3835-RB | 184..1058 | 17..891 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2143525..2144067 | 349..891 | 2715 | 100 | Plus |
X | 23542271 | X | 2143057..2143248 | 17..208 | 960 | 100 | Plus |
X | 23542271 | X | 2143309..2143453 | 207..351 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:06:56 has no hits.
BS07624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:21 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PC | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:28 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:54:44 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 174..1058 | 7..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:49 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 174..1058 | 7..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:49 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143047..2143248 | 7..208 | 98 | -> | Plus |
X | 2143311..2143452 | 209..350 | 100 | -> | Plus |
X | 2143527..2144067 | 351..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:54:44 Download gff for
BS07624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037080..2037281 | 7..208 | 98 | -> | Plus |
arm_X | 2037344..2037485 | 209..350 | 100 | -> | Plus |
arm_X | 2037560..2038100 | 351..891 | 100 | | Plus |
BS07624.complete Sequence
1634 bp (1634 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635924
> BS07624.complete
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGT
GGCCTTCATCGGCCTGAACTCCTTCGACGATGTGCTGAAGACTTTTGTCA
GTGCCAAGCGTAATCTGGGCGAGATTCTAAGCTCCTGCGAGCTGATTGAC
GAGCGGGCCTTGAACACCGCCCTCGAGCAGTTCAAGTTCCTGAACTCCCC
CATTTCGGGATTTCCCTTCTACATGCTCATCGAGACCTCGGGCAGCAACG
GTGACCACGACGAGGAGAAGATCAACCAGTTCATTGGGGACGGTATGGAG
CGTGGCGAGATCCAGGATGGCACCGTAACCGGTGATCCCGGCAAGGTGCA
GGAGATCTGGAAGATCCGCGAAATGGTGCCGCTGGGTCTGATCGAGAAGA
GCTTCTGCTTCAAGTACGACATCTCGCTGCCTCTGCGGGACTTCTACAAC
ATTGTGGACGTGATGCGAGAGAGGTGCGGTCCCCTGGCCACAGTTGTCTG
CGGATACGGCCATCTGGGGGACTCTAATCTGCACCTGAACGTCTCCTGCG
AGGAGTTTAACGGCGAGATCTACAAGCGGGTCGAACCCTTCGTCTACGAG
TACACCTCCAAGCTGAAGGGCAGCATTAGTGCGGAGCACGGCATTGGCTT
CCTGAAGAAGGACTACCTGCACTACTCCAAGGACCCGGTGGCCATTGGCT
ACATGCGCGAGATGAAGAAGCTGCTGGACCCCAACAGCATCCTCAATCCC
TATAAGGTGCTTAACTGAAAGCTTTCTAGACCAT
BS07624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1602 | CG3835-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
CG3835-RC | 1602 | CG3835-PC | 1..1602 | 17..1618 | 8010 | 100 | Plus |
CG3835-RB | 1602 | CG3835-PB | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-RA | 1987 | CG3835-RA | 309..1916 | 17..1624 | 8025 | 99.9 | Plus |
CG3835-RC | 1966 | CG3835-RC | 288..1895 | 17..1624 | 8025 | 99.9 | Plus |
CG3835-RB | 1862 | CG3835-RB | 184..1791 | 17..1624 | 8025 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2143525..2144220 | 349..1044 | 3480 | 100 | Plus |
X | 23542271 | X | 2144287..2144866 | 1045..1624 | 2885 | 99.8 | Plus |
X | 23542271 | X | 2143057..2143248 | 17..208 | 960 | 100 | Plus |
X | 23542271 | X | 2143309..2143453 | 207..351 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:48 has no hits.
BS07624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:18 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 1..1602 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:16 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 254..1877 | 7..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 184..1784 | 17..1617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:18 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RA | 254..1877 | 7..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:02 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3835-RB | 184..1784 | 17..1617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:02 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2143057..2143248 | 17..208 | 100 | -> | Plus |
X | 2143311..2143452 | 209..350 | 100 | -> | Plus |
X | 2143527..2144220 | 351..1044 | 100 | -> | Plus |
X | 2144287..2144859 | 1045..1617 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:06 Download gff for
BS07624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2037090..2037281 | 17..208 | 100 | -> | Plus |
arm_X | 2037344..2037485 | 209..350 | 100 | -> | Plus |
arm_X | 2037560..2038253 | 351..1044 | 100 | -> | Plus |
arm_X | 2038320..2038892 | 1045..1617 | 100 | | Plus |
BS07624.pep Sequence
Translation from 16 to 1617
> BS07624.pep
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLN*
BS07624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3835-PA | 533 | CG3835-PA | 1..533 | 1..533 | 2748 | 100 | Plus |
CG3835-PC | 533 | CG3835-PC | 1..533 | 1..533 | 2748 | 100 | Plus |
CG3835-PB | 533 | CG3835-PB | 1..533 | 1..533 | 2748 | 100 | Plus |
CG10253-PC | 631 | CG10253-PC | 161..330 | 116..282 | 173 | 28.7 | Plus |
CG10253-PB | 631 | CG10253-PB | 161..330 | 116..282 | 173 | 28.7 | Plus |