Clone BS07624 Report

Search the DGRC for BS07624

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:76
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG3835-RA
Protein status:BS07624.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07624.3prime Sequence

882 bp (835 high quality bases) assembled on 2006-01-06

> BS07624.3prime
ATGGTCTAGAAAGCTTTCAGTTAAGCACCTTATAGGGATTGAGGATGCTG
TTGGGGTCCAGCAGCTTCTTCATCTCGCGCATGTAGCCAATGGCCACCGG
GTCCTTGGAGTAGTGCAGGTAGTCCTTCTTCAGGAAGCCAATGCCGTGCT
CCGCACTAATGCTGCCCTTCAGCTTGGAGGTGTACTCGTAGACGAAGGGT
TCGACCCGCTTGTAGATCTCGCCGTTAAACTCCTCGCAGGAGACGTTCAG
GTGCAGATTAGAGTCCCCCAGATGGCCGTATCCGCAGACAACTGTGGCCA
GGGGACCGCACCTCTCTCGCATCACGTCCACAATGTTGTAGAAGTCCCGC
AGAGGCAGCGAGATGTCGTACTTGAAGCAGAAGCTCTTCTCGATCAGACC
CAGCGGCACCATTTCGCGGATCTTCCAGATCTCCTGCACCTTGCCGGGAT
CACCGGTTACGGTGCCATCCTGGATCTCGCCACGCTCCATACCGTCCCCA
ATGAACTGGTTGATCTTCTCCTCGTCGTGGTCACCGTTGCTGCCCGAGGT
CTCGATGAGCATGTAGAAGGGAAATCCCGAAATGGGGGAGTTCAGGAACT
TGAACTGCTCGAGGGCGGTGTTCAAGGCCCGCTCGTCAATCAGCTCGCAG
GAGCTTAGAATCTCGCCCAGATTACGCTTGGCACTGACAAAAGTCTTCAG
CACATCGTCGAAGGAGTTCAGGCCGATGAAGGCCACGTTCACCGCTCGCG
AGGAATGGGGGCAGAGCATCGAAAGCTTCGTGACCACGCCCAGAGTGCCC
TCGGATCCTATGAACAAGTGCTTCATGTGGTAGCCGGTGTTGTCCTTCTT
GAAGTTGGACATAAGGTCCAGCACCTGAACGG

BS07624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PB 1602 CG3835-RB 741..1602 878..17 4310 100 Minus
CG3835-PC 1602 CG3835-RC 741..1602 878..17 4310 100 Minus
CG3835-PA 1602 CG3835-RA 741..1602 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 1045..1916 882..11 4330 99.8 Minus
CG3835-RC 1966 CG3835-RC 1024..1895 882..11 4330 99.8 Minus
CG3835-RB 1862 CG3835-RB 920..1791 882..11 4330 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2144287..2144866 590..11 2885 99.8 Minus
X 23542271 X 2143929..2144220 882..591 1445 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:07:08 has no hits.

BS07624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:19 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PC 737..1602 17..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:26 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PA 737..1602 17..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:41 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 920..1797 1..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:18 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 920..1797 1..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:18 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2143929..2144220 591..882 99 -> Minus
X 2144287..2144872 1..590 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:41 Download gff for BS07624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037962..2038253 591..882 99 -> Minus
arm_X 2038320..2038905 1..590 99   Minus

BS07624.5prime Sequence

891 bp (785 high quality bases) assembled on 2006-01-06

> BS07624.5prime
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGC

BS07624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PB 1602 CG3835-RB 1..875 17..891 4375 100 Plus
CG3835-PC 1602 CG3835-RC 1..875 17..891 4375 100 Plus
CG3835-PA 1602 CG3835-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 309..1183 17..891 4375 100 Plus
CG3835-RC 1966 CG3835-RC 288..1162 17..891 4375 100 Plus
CG3835-RB 1862 CG3835-RB 184..1058 17..891 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2143525..2144067 349..891 2715 100 Plus
X 23542271 X 2143057..2143248 17..208 960 100 Plus
X 23542271 X 2143309..2143453 207..351 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:06:56 has no hits.

BS07624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:18:21 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PC 1..875 17..891 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:10:28 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:54:44 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 174..1058 7..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:49 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 174..1058 7..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:49 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2143047..2143248 7..208 98 -> Plus
X 2143311..2143452 209..350 100 -> Plus
X 2143527..2144067 351..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:54:44 Download gff for BS07624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037080..2037281 7..208 98 -> Plus
arm_X 2037344..2037485 209..350 100 -> Plus
arm_X 2037560..2038100 351..891 100   Plus

BS07624.complete Sequence

1634 bp (1634 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635924

> BS07624.complete
GAAGTTATCAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGAT
TGGCCAGCGCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACC
ACCATCACCACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTT
CGCAACCACTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGC
TCACAGAGATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACC
GACAAGGATGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCT
CACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAG
GCAACAGCAAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCC
ATCCTGAAGTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGG
GAACACAGGTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCC
TTTCTCTAGCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGC
ATTGCTGTCGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGC
CAGAGAGGTGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTT
GCCACATCGGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTG
CGTTACGGCAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGC
CACCGGTCAGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCG
GCTACCACATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTG
GTCACGAAGCTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGT
GGCCTTCATCGGCCTGAACTCCTTCGACGATGTGCTGAAGACTTTTGTCA
GTGCCAAGCGTAATCTGGGCGAGATTCTAAGCTCCTGCGAGCTGATTGAC
GAGCGGGCCTTGAACACCGCCCTCGAGCAGTTCAAGTTCCTGAACTCCCC
CATTTCGGGATTTCCCTTCTACATGCTCATCGAGACCTCGGGCAGCAACG
GTGACCACGACGAGGAGAAGATCAACCAGTTCATTGGGGACGGTATGGAG
CGTGGCGAGATCCAGGATGGCACCGTAACCGGTGATCCCGGCAAGGTGCA
GGAGATCTGGAAGATCCGCGAAATGGTGCCGCTGGGTCTGATCGAGAAGA
GCTTCTGCTTCAAGTACGACATCTCGCTGCCTCTGCGGGACTTCTACAAC
ATTGTGGACGTGATGCGAGAGAGGTGCGGTCCCCTGGCCACAGTTGTCTG
CGGATACGGCCATCTGGGGGACTCTAATCTGCACCTGAACGTCTCCTGCG
AGGAGTTTAACGGCGAGATCTACAAGCGGGTCGAACCCTTCGTCTACGAG
TACACCTCCAAGCTGAAGGGCAGCATTAGTGCGGAGCACGGCATTGGCTT
CCTGAAGAAGGACTACCTGCACTACTCCAAGGACCCGGTGGCCATTGGCT
ACATGCGCGAGATGAAGAAGCTGCTGGACCCCAACAGCATCCTCAATCCC
TATAAGGTGCTTAACTGAAAGCTTTCTAGACCAT

BS07624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1602 CG3835-PA 1..1602 17..1618 8010 100 Plus
CG3835-RC 1602 CG3835-PC 1..1602 17..1618 8010 100 Plus
CG3835-RB 1602 CG3835-PB 1..1602 17..1618 8010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-RA 1987 CG3835-RA 309..1916 17..1624 8025 99.9 Plus
CG3835-RC 1966 CG3835-RC 288..1895 17..1624 8025 99.9 Plus
CG3835-RB 1862 CG3835-RB 184..1791 17..1624 8025 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2143525..2144220 349..1044 3480 100 Plus
X 23542271 X 2144287..2144866 1045..1624 2885 99.8 Plus
X 23542271 X 2143057..2143248 17..208 960 100 Plus
X 23542271 X 2143309..2143453 207..351 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:48 has no hits.

BS07624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:18 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 1..1602 17..1618 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:16 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 254..1877 7..1634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 184..1784 17..1617 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:18 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RA 254..1877 7..1634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:02 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
CG3835-RB 184..1784 17..1617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:02 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
X 2143057..2143248 17..208 100 -> Plus
X 2143311..2143452 209..350 100 -> Plus
X 2143527..2144220 351..1044 100 -> Plus
X 2144287..2144859 1045..1617 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:06 Download gff for BS07624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2037090..2037281 17..208 100 -> Plus
arm_X 2037344..2037485 209..350 100 -> Plus
arm_X 2037560..2038253 351..1044 100 -> Plus
arm_X 2038320..2038892 1045..1617 100   Plus

BS07624.pep Sequence

Translation from 16 to 1617

> BS07624.pep
MRFQQLLHVRRLASAGATTLMRRPITTTTITTTSRTALAATYPAFATTVR
TMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHFEQLLGKNFVLTEDLE
GYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV
GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGL
TVPLDLGAKASCHIGGNVSTNAGGVRVVRYGNLHGSVLGVEAVLATGQVL
DLMSNFKKDNTGYHMKHLFIGSEGTLGVVTKLSMLCPHSSRAVNVAFIGL
NSFDDVLKTFVSAKRNLGEILSSCELIDERALNTALEQFKFLNSPISGFP
FYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKI
REMVPLGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHL
GDSNLHLNVSCEEFNGEIYKRVEPFVYEYTSKLKGSISAEHGIGFLKKDY
LHYSKDPVAIGYMREMKKLLDPNSILNPYKVLN*

BS07624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3835-PA 533 CG3835-PA 1..533 1..533 2748 100 Plus
CG3835-PC 533 CG3835-PC 1..533 1..533 2748 100 Plus
CG3835-PB 533 CG3835-PB 1..533 1..533 2748 100 Plus
CG10253-PC 631 CG10253-PC 161..330 116..282 173 28.7 Plus
CG10253-PB 631 CG10253-PB 161..330 116..282 173 28.7 Plus